data_6BXL # _model_server_result.job_id hsDUpj0_d0OLgR9WmF0G7Q _model_server_result.datetime_utc '2024-11-23 02:38:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6BXL # _exptl.entry_id 6BXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BXL _cell.length_a 57.035 _cell.length_b 80.904 _cell.length_c 161.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 95 A CYS 59 1_555 D FE1 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 A SG CYS 199 A CYS 163 1_555 D FE2 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A SG CYS 323 A CYS 287 1_555 D FE3 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 C N SAM . A SAM 401 1_555 D FE4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 B SG CYS 95 B CYS 59 1_555 F FE1 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 B SG CYS 199 B CYS 163 1_555 F FE2 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 B SG CYS 323 B CYS 287 1_555 F FE3 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 E N SAM . B SAM 401 1_555 F FE4 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 6BXL _atom_sites.fract_transf_matrix[1][1] 0.017533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 401 1 SAM SAM . D 3 SF4 A 1 402 1 SF4 SF4 . E 2 SAM B 1 401 2 SAM SAM . F 3 SF4 B 1 402 2 SF4 SF4 . G 4 HOH A 1 501 7 HOH HOH . G 4 HOH A 2 502 25 HOH HOH . G 4 HOH A 3 503 5 HOH HOH . G 4 HOH A 4 504 26 HOH HOH . G 4 HOH A 5 505 37 HOH HOH . G 4 HOH A 6 506 1 HOH HOH . G 4 HOH A 7 507 47 HOH HOH . G 4 HOH A 8 508 32 HOH HOH . G 4 HOH A 9 509 9 HOH HOH . G 4 HOH A 10 510 43 HOH HOH . G 4 HOH A 11 511 29 HOH HOH . G 4 HOH A 12 512 8 HOH HOH . G 4 HOH A 13 513 61 HOH HOH . G 4 HOH A 14 514 6 HOH HOH . G 4 HOH A 15 515 44 HOH HOH . G 4 HOH A 16 516 2 HOH HOH . G 4 HOH A 17 517 57 HOH HOH . G 4 HOH A 18 518 45 HOH HOH . G 4 HOH A 19 519 11 HOH HOH . G 4 HOH A 20 520 3 HOH HOH . G 4 HOH A 21 521 10 HOH HOH . G 4 HOH A 22 522 66 HOH HOH . G 4 HOH A 23 523 28 HOH HOH . G 4 HOH A 24 524 15 HOH HOH . G 4 HOH A 25 525 63 HOH HOH . G 4 HOH A 26 526 35 HOH HOH . G 4 HOH A 27 527 40 HOH HOH . G 4 HOH A 28 528 65 HOH HOH . G 4 HOH A 29 529 56 HOH HOH . G 4 HOH A 30 530 52 HOH HOH . G 4 HOH A 31 531 68 HOH HOH . G 4 HOH A 32 532 4 HOH HOH . G 4 HOH A 33 533 53 HOH HOH . G 4 HOH A 34 534 62 HOH HOH . G 4 HOH A 35 535 60 HOH HOH . G 4 HOH A 36 536 55 HOH HOH . G 4 HOH A 37 537 39 HOH HOH . G 4 HOH A 38 538 42 HOH HOH . H 4 HOH B 1 501 34 HOH HOH . H 4 HOH B 2 502 16 HOH HOH . H 4 HOH B 3 503 20 HOH HOH . H 4 HOH B 4 504 17 HOH HOH . H 4 HOH B 5 505 58 HOH HOH . H 4 HOH B 6 506 59 HOH HOH . H 4 HOH B 7 507 33 HOH HOH . H 4 HOH B 8 508 41 HOH HOH . H 4 HOH B 9 509 50 HOH HOH . H 4 HOH B 10 510 24 HOH HOH . H 4 HOH B 11 511 18 HOH HOH . H 4 HOH B 12 512 22 HOH HOH . H 4 HOH B 13 513 19 HOH HOH . H 4 HOH B 14 514 14 HOH HOH . H 4 HOH B 15 515 23 HOH HOH . H 4 HOH B 16 516 12 HOH HOH . H 4 HOH B 17 517 30 HOH HOH . H 4 HOH B 18 518 21 HOH HOH . H 4 HOH B 19 519 51 HOH HOH . H 4 HOH B 20 520 46 HOH HOH . H 4 HOH B 21 521 27 HOH HOH . H 4 HOH B 22 522 69 HOH HOH . H 4 HOH B 23 523 64 HOH HOH . H 4 HOH B 24 524 36 HOH HOH . H 4 HOH B 25 525 54 HOH HOH . H 4 HOH B 26 526 38 HOH HOH . H 4 HOH B 27 527 48 HOH HOH . H 4 HOH B 28 528 67 HOH HOH . H 4 HOH B 29 529 31 HOH HOH . H 4 HOH B 30 530 49 HOH HOH . H 4 HOH B 31 531 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 2 25.01 29.479 27.083 0.8 82.8 ? N SAM 401 A 1 HETATM 2 C CA SAM . . . C 2 26.073 28.488 26.963 0.8 79.84 ? CA SAM 401 A 1 HETATM 3 C C SAM . . . C 2 27.374 29.015 27.56 0.8 71.81 ? C SAM 401 A 1 HETATM 4 O O SAM . . . C 2 27.369 30.017 28.271 0.8 70.28 ? O SAM 401 A 1 HETATM 5 O OXT SAM . . . C 2 28.454 28.46 27.352 0.8 69.85 ? OXT SAM 401 A 1 HETATM 6 C CB SAM . . . C 2 26.273 28.097 25.498 0.8 82.72 ? CB SAM 401 A 1 HETATM 7 C CG SAM . . . C 2 26.827 29.201 24.605 0.8 83.83 ? CG SAM 401 A 1 HETATM 8 S SD SAM . . . C 2 26.587 28.879 22.836 0.8 90.89 ? SD SAM 401 A 1 HETATM 9 C CE SAM . . . C 2 26.84 27.09 22.736 0.8 89.15 ? CE SAM 401 A 1 HETATM 10 C C5' SAM . . . C 2 28.159 29.509 22.194 0.8 86.77 ? C5' SAM 401 A 1 HETATM 11 C C4' SAM . . . C 2 28.115 30.02 20.755 0.8 81.39 ? C4' SAM 401 A 1 HETATM 12 O O4' SAM . . . C 2 26.812 30.394 20.337 0.8 78.15 ? O4' SAM 401 A 1 HETATM 13 C C3' SAM . . . C 2 28.984 31.262 20.602 0.8 79.74 ? C3' SAM 401 A 1 HETATM 14 O O3' SAM . . . C 2 30.282 30.92 20.162 0.8 85.64 ? O3' SAM 401 A 1 HETATM 15 C C2' SAM . . . C 2 28.241 32.133 19.604 0.8 73.23 ? C2' SAM 401 A 1 HETATM 16 O O2' SAM . . . C 2 28.947 32.222 18.385 0.8 69.79 ? O2' SAM 401 A 1 HETATM 17 C C1' SAM . . . C 2 26.906 31.434 19.382 0.8 73.87 ? C1' SAM 401 A 1 HETATM 18 N N9 SAM . . . C 2 25.813 32.412 19.536 0.8 77.69 ? N9 SAM 401 A 1 HETATM 19 C C8 SAM . . . C 2 25.273 32.86 20.717 0.8 73.85 ? C8 SAM 401 A 1 HETATM 20 N N7 SAM . . . C 2 24.309 33.768 20.436 0.8 74.83 ? N7 SAM 401 A 1 HETATM 21 C C5 SAM . . . C 2 24.23 33.918 19.093 0.8 75.56 ? C5 SAM 401 A 1 HETATM 22 C C6 SAM . . . C 2 23.427 34.711 18.275 0.8 68.73 ? C6 SAM 401 A 1 HETATM 23 N N6 SAM . . . C 2 22.52 35.527 18.803 0.8 62.05 ? N6 SAM 401 A 1 HETATM 24 N N1 SAM . . . C 2 23.576 34.642 16.903 0.8 63.07 ? N1 SAM 401 A 1 HETATM 25 C C2 SAM . . . C 2 24.516 33.798 16.349 0.8 63.72 ? C2 SAM 401 A 1 HETATM 26 N N3 SAM . . . C 2 25.312 33.018 17.163 0.8 72.79 ? N3 SAM 401 A 1 HETATM 27 C C4 SAM . . . C 2 25.171 33.069 18.514 0.8 78.66 ? C4 SAM 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #