data_6BXL # _model_server_result.job_id zn9T0-w5myyqjLyEyx4WIg _model_server_result.datetime_utc '2024-11-23 02:22:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6BXL # _exptl.entry_id 6BXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BXL _cell.length_a 57.035 _cell.length_b 80.904 _cell.length_c 161.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 95 A CYS 59 1_555 D FE1 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 A SG CYS 199 A CYS 163 1_555 D FE2 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A SG CYS 323 A CYS 287 1_555 D FE3 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 C N SAM . A SAM 401 1_555 D FE4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 B SG CYS 95 B CYS 59 1_555 F FE1 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 B SG CYS 199 B CYS 163 1_555 F FE2 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 B SG CYS 323 B CYS 287 1_555 F FE3 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 E N SAM . B SAM 401 1_555 F FE4 SF4 . B SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 341 n n FE1 S3 SF4 sing 342 n n FE1 S4 SF4 sing 343 n n FE2 S1 SF4 sing 344 n n FE2 S3 SF4 sing 345 n n FE2 S4 SF4 sing 346 n n FE3 S1 SF4 sing 347 n n FE3 S2 SF4 sing 348 n n FE3 S4 SF4 sing 349 n n FE4 S1 SF4 sing 350 n n FE4 S2 SF4 sing 351 n n FE4 S3 SF4 sing 352 n n # _atom_sites.entry_id 6BXL _atom_sites.fract_transf_matrix[1][1] 0.017533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 401 1 SAM SAM . D 3 SF4 A 1 402 1 SF4 SF4 . E 2 SAM B 1 401 2 SAM SAM . F 3 SF4 B 1 402 2 SF4 SF4 . G 4 HOH A 1 501 7 HOH HOH . G 4 HOH A 2 502 25 HOH HOH . G 4 HOH A 3 503 5 HOH HOH . G 4 HOH A 4 504 26 HOH HOH . G 4 HOH A 5 505 37 HOH HOH . G 4 HOH A 6 506 1 HOH HOH . G 4 HOH A 7 507 47 HOH HOH . G 4 HOH A 8 508 32 HOH HOH . G 4 HOH A 9 509 9 HOH HOH . G 4 HOH A 10 510 43 HOH HOH . G 4 HOH A 11 511 29 HOH HOH . G 4 HOH A 12 512 8 HOH HOH . G 4 HOH A 13 513 61 HOH HOH . G 4 HOH A 14 514 6 HOH HOH . G 4 HOH A 15 515 44 HOH HOH . G 4 HOH A 16 516 2 HOH HOH . G 4 HOH A 17 517 57 HOH HOH . G 4 HOH A 18 518 45 HOH HOH . G 4 HOH A 19 519 11 HOH HOH . G 4 HOH A 20 520 3 HOH HOH . G 4 HOH A 21 521 10 HOH HOH . G 4 HOH A 22 522 66 HOH HOH . G 4 HOH A 23 523 28 HOH HOH . G 4 HOH A 24 524 15 HOH HOH . G 4 HOH A 25 525 63 HOH HOH . G 4 HOH A 26 526 35 HOH HOH . G 4 HOH A 27 527 40 HOH HOH . G 4 HOH A 28 528 65 HOH HOH . G 4 HOH A 29 529 56 HOH HOH . G 4 HOH A 30 530 52 HOH HOH . G 4 HOH A 31 531 68 HOH HOH . G 4 HOH A 32 532 4 HOH HOH . G 4 HOH A 33 533 53 HOH HOH . G 4 HOH A 34 534 62 HOH HOH . G 4 HOH A 35 535 60 HOH HOH . G 4 HOH A 36 536 55 HOH HOH . G 4 HOH A 37 537 39 HOH HOH . G 4 HOH A 38 538 42 HOH HOH . H 4 HOH B 1 501 34 HOH HOH . H 4 HOH B 2 502 16 HOH HOH . H 4 HOH B 3 503 20 HOH HOH . H 4 HOH B 4 504 17 HOH HOH . H 4 HOH B 5 505 58 HOH HOH . H 4 HOH B 6 506 59 HOH HOH . H 4 HOH B 7 507 33 HOH HOH . H 4 HOH B 8 508 41 HOH HOH . H 4 HOH B 9 509 50 HOH HOH . H 4 HOH B 10 510 24 HOH HOH . H 4 HOH B 11 511 18 HOH HOH . H 4 HOH B 12 512 22 HOH HOH . H 4 HOH B 13 513 19 HOH HOH . H 4 HOH B 14 514 14 HOH HOH . H 4 HOH B 15 515 23 HOH HOH . H 4 HOH B 16 516 12 HOH HOH . H 4 HOH B 17 517 30 HOH HOH . H 4 HOH B 18 518 21 HOH HOH . H 4 HOH B 19 519 51 HOH HOH . H 4 HOH B 20 520 46 HOH HOH . H 4 HOH B 21 521 27 HOH HOH . H 4 HOH B 22 522 69 HOH HOH . H 4 HOH B 23 523 64 HOH HOH . H 4 HOH B 24 524 36 HOH HOH . H 4 HOH B 25 525 54 HOH HOH . H 4 HOH B 26 526 38 HOH HOH . H 4 HOH B 27 527 48 HOH HOH . H 4 HOH B 28 528 67 HOH HOH . H 4 HOH B 29 529 31 HOH HOH . H 4 HOH B 30 530 49 HOH HOH . H 4 HOH B 31 531 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 3 23.336 32.872 25.513 0.8 86.36 ? FE1 SF4 402 A 1 HETATM 2 FE FE2 SF4 . . . D 3 25.208 33.991 27.316 0.8 87.83 ? FE2 SF4 402 A 1 HETATM 3 FE FE3 SF4 . . . D 3 25.828 33.795 24.587 0.8 94.9 ? FE3 SF4 402 A 1 HETATM 4 FE FE4 SF4 . . . D 3 25.588 31.485 26.142 0.8 148.94 ? FE4 SF4 402 A 1 HETATM 5 S S1 SF4 . . . D 3 27.119 33.122 26.263 0.8 90.23 ? S1 SF4 402 A 1 HETATM 6 S S2 SF4 . . . D 3 24.763 31.933 24.017 0.8 91.6 ? S2 SF4 402 A 1 HETATM 7 S S3 SF4 . . . D 3 23.954 32.111 27.578 0.8 89.67 ? S3 SF4 402 A 1 HETATM 8 S S4 SF4 . . . D 3 24.114 34.955 25.5 0.8 80.93 ? S4 SF4 402 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #