data_6BXM # _model_server_result.job_id KDUU865sr3od-2r1Uh0JNA _model_server_result.datetime_utc '2024-11-26 10:02:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6BXM # _exptl.entry_id 6BXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BXM _cell.length_a 61.887 _cell.length_b 64.08 _cell.length_c 158.368 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 65 A CYS 61 1_555 C FE1 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A SG CYS 163 A CYS 159 1_555 C FE2 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 A SG CYS 287 A CYS 283 1_555 C FE3 SF4 . A SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc4 C FE4 SF4 . A SF4 401 1_555 D N SAM . A SAM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 B SG CYS 65 B CYS 61 1_555 E FE1 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 B SG CYS 163 B CYS 159 1_555 E FE2 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc7 B SG CYS 287 B CYS 283 1_555 E FE3 SF4 . B SF4 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc8 E FE4 SF4 . B SF4 401 1_555 F N ABA . B ABA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 393 n n FE1 S3 SF4 sing 394 n n FE1 S4 SF4 sing 395 n n FE2 S1 SF4 sing 396 n n FE2 S3 SF4 sing 397 n n FE2 S4 SF4 sing 398 n n FE3 S1 SF4 sing 399 n n FE3 S2 SF4 sing 400 n n FE3 S4 SF4 sing 401 n n FE4 S1 SF4 sing 402 n n FE4 S2 SF4 sing 403 n n FE4 S3 SF4 sing 404 n n # _atom_sites.entry_id 6BXM _atom_sites.fract_transf_matrix[1][1] 0.016158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 401 324 SF4 SF4 . D 3 SAM A 1 402 600 SAM SAM . E 2 SF4 B 1 401 322 SF4 SF4 . F 4 ABA B 1 402 601 ABA AC3 . G 5 MTA B 1 403 602 MTA MTA . H 6 HOH A 1 501 51 HOH HOH . H 6 HOH A 2 502 25 HOH HOH . H 6 HOH A 3 503 57 HOH HOH . H 6 HOH A 4 504 76 HOH HOH . H 6 HOH A 5 505 9 HOH HOH . H 6 HOH A 6 506 54 HOH HOH . H 6 HOH A 7 507 60 HOH HOH . H 6 HOH A 8 508 65 HOH HOH . H 6 HOH A 9 509 15 HOH HOH . H 6 HOH A 10 510 91 HOH HOH . H 6 HOH A 11 511 7 HOH HOH . H 6 HOH A 12 512 23 HOH HOH . H 6 HOH A 13 513 1 HOH HOH . H 6 HOH A 14 514 59 HOH HOH . H 6 HOH A 15 515 74 HOH HOH . H 6 HOH A 16 516 87 HOH HOH . H 6 HOH A 17 517 20 HOH HOH . H 6 HOH A 18 518 32 HOH HOH . H 6 HOH A 19 519 189 HOH HOH . H 6 HOH A 20 520 95 HOH HOH . H 6 HOH A 21 521 13 HOH HOH . H 6 HOH A 22 522 24 HOH HOH . H 6 HOH A 23 523 47 HOH HOH . H 6 HOH A 24 524 43 HOH HOH . H 6 HOH A 25 525 10 HOH HOH . H 6 HOH A 26 526 22 HOH HOH . H 6 HOH A 27 527 8 HOH HOH . H 6 HOH A 28 528 16 HOH HOH . H 6 HOH A 29 529 173 HOH HOH . H 6 HOH A 30 530 27 HOH HOH . H 6 HOH A 31 531 38 HOH HOH . H 6 HOH A 32 532 4 HOH HOH . H 6 HOH A 33 533 29 HOH HOH . H 6 HOH A 34 534 6 HOH HOH . H 6 HOH A 35 535 40 HOH HOH . H 6 HOH A 36 536 45 HOH HOH . H 6 HOH A 37 537 5 HOH HOH . H 6 HOH A 38 538 85 HOH HOH . H 6 HOH A 39 539 19 HOH HOH . H 6 HOH A 40 540 3 HOH HOH . H 6 HOH A 41 541 31 HOH HOH . H 6 HOH A 42 542 92 HOH HOH . H 6 HOH A 43 543 14 HOH HOH . H 6 HOH A 44 544 49 HOH HOH . H 6 HOH A 45 545 70 HOH HOH . H 6 HOH A 46 546 78 HOH HOH . H 6 HOH A 47 547 36 HOH HOH . H 6 HOH A 48 548 61 HOH HOH . H 6 HOH A 49 549 17 HOH HOH . H 6 HOH A 50 550 63 HOH HOH . H 6 HOH A 51 551 53 HOH HOH . H 6 HOH A 52 552 35 HOH HOH . H 6 HOH A 53 553 18 HOH HOH . H 6 HOH A 54 554 37 HOH HOH . H 6 HOH A 55 555 93 HOH HOH . H 6 HOH A 56 556 58 HOH HOH . H 6 HOH A 57 557 81 HOH HOH . H 6 HOH A 58 558 79 HOH HOH . H 6 HOH A 59 559 33 HOH HOH . H 6 HOH A 60 560 102 HOH HOH . H 6 HOH A 61 561 55 HOH HOH . H 6 HOH A 62 562 2 HOH HOH . H 6 HOH A 63 563 11 HOH HOH . H 6 HOH A 64 564 44 HOH HOH . H 6 HOH A 65 565 83 HOH HOH . H 6 HOH A 66 566 50 HOH HOH . H 6 HOH A 67 567 52 HOH HOH . H 6 HOH A 68 568 86 HOH HOH . H 6 HOH A 69 569 88 HOH HOH . H 6 HOH A 70 570 56 HOH HOH . H 6 HOH A 71 571 26 HOH HOH . H 6 HOH A 72 572 48 HOH HOH . H 6 HOH A 73 573 67 HOH HOH . H 6 HOH A 74 574 21 HOH HOH . H 6 HOH A 75 575 90 HOH HOH . H 6 HOH A 76 576 30 HOH HOH . H 6 HOH A 77 577 82 HOH HOH . H 6 HOH A 78 578 73 HOH HOH . H 6 HOH A 79 579 94 HOH HOH . H 6 HOH A 80 580 39 HOH HOH . H 6 HOH A 81 581 34 HOH HOH . H 6 HOH A 82 582 80 HOH HOH . H 6 HOH A 83 583 64 HOH HOH . H 6 HOH A 84 584 69 HOH HOH . H 6 HOH A 85 585 12 HOH HOH . H 6 HOH A 86 586 71 HOH HOH . H 6 HOH A 87 587 28 HOH HOH . H 6 HOH A 88 588 46 HOH HOH . H 6 HOH A 89 589 41 HOH HOH . H 6 HOH A 90 590 42 HOH HOH . H 6 HOH A 91 591 200 HOH HOH . H 6 HOH A 92 592 89 HOH HOH . H 6 HOH A 93 593 151 HOH HOH . H 6 HOH A 94 594 62 HOH HOH . H 6 HOH A 95 595 72 HOH HOH . H 6 HOH A 96 596 68 HOH HOH . H 6 HOH A 97 597 84 HOH HOH . H 6 HOH A 98 598 66 HOH HOH . I 6 HOH B 1 501 186 HOH HOH . I 6 HOH B 2 502 187 HOH HOH . I 6 HOH B 3 503 159 HOH HOH . I 6 HOH B 4 504 122 HOH HOH . I 6 HOH B 5 505 199 HOH HOH . I 6 HOH B 6 506 127 HOH HOH . I 6 HOH B 7 507 165 HOH HOH . I 6 HOH B 8 508 174 HOH HOH . I 6 HOH B 9 509 125 HOH HOH . I 6 HOH B 10 510 106 HOH HOH . I 6 HOH B 11 511 109 HOH HOH . I 6 HOH B 12 512 119 HOH HOH . I 6 HOH B 13 513 107 HOH HOH . I 6 HOH B 14 514 196 HOH HOH . I 6 HOH B 15 515 112 HOH HOH . I 6 HOH B 16 516 124 HOH HOH . I 6 HOH B 17 517 103 HOH HOH . I 6 HOH B 18 518 97 HOH HOH . I 6 HOH B 19 519 96 HOH HOH . I 6 HOH B 20 520 123 HOH HOH . I 6 HOH B 21 521 132 HOH HOH . I 6 HOH B 22 522 120 HOH HOH . I 6 HOH B 23 523 133 HOH HOH . I 6 HOH B 24 524 134 HOH HOH . I 6 HOH B 25 525 160 HOH HOH . I 6 HOH B 26 526 149 HOH HOH . I 6 HOH B 27 527 115 HOH HOH . I 6 HOH B 28 528 142 HOH HOH . I 6 HOH B 29 529 198 HOH HOH . I 6 HOH B 30 530 99 HOH HOH . I 6 HOH B 31 531 116 HOH HOH . I 6 HOH B 32 532 138 HOH HOH . I 6 HOH B 33 533 131 HOH HOH . I 6 HOH B 34 534 118 HOH HOH . I 6 HOH B 35 535 152 HOH HOH . I 6 HOH B 36 536 183 HOH HOH . I 6 HOH B 37 537 104 HOH HOH . I 6 HOH B 38 538 126 HOH HOH . I 6 HOH B 39 539 136 HOH HOH . I 6 HOH B 40 540 150 HOH HOH . I 6 HOH B 41 541 139 HOH HOH . I 6 HOH B 42 542 108 HOH HOH . I 6 HOH B 43 543 128 HOH HOH . I 6 HOH B 44 544 101 HOH HOH . I 6 HOH B 45 545 137 HOH HOH . I 6 HOH B 46 546 100 HOH HOH . I 6 HOH B 47 547 98 HOH HOH . I 6 HOH B 48 548 114 HOH HOH . I 6 HOH B 49 549 179 HOH HOH . I 6 HOH B 50 550 184 HOH HOH . I 6 HOH B 51 551 157 HOH HOH . I 6 HOH B 52 552 169 HOH HOH . I 6 HOH B 53 553 143 HOH HOH . I 6 HOH B 54 554 195 HOH HOH . I 6 HOH B 55 555 181 HOH HOH . I 6 HOH B 56 556 185 HOH HOH . I 6 HOH B 57 557 171 HOH HOH . I 6 HOH B 58 558 175 HOH HOH . I 6 HOH B 59 559 111 HOH HOH . I 6 HOH B 60 560 154 HOH HOH . I 6 HOH B 61 561 113 HOH HOH . I 6 HOH B 62 562 190 HOH HOH . I 6 HOH B 63 563 129 HOH HOH . I 6 HOH B 64 564 110 HOH HOH . I 6 HOH B 65 565 194 HOH HOH . I 6 HOH B 66 566 145 HOH HOH . I 6 HOH B 67 567 135 HOH HOH . I 6 HOH B 68 568 141 HOH HOH . I 6 HOH B 69 569 176 HOH HOH . I 6 HOH B 70 570 117 HOH HOH . I 6 HOH B 71 571 166 HOH HOH . I 6 HOH B 72 572 130 HOH HOH . I 6 HOH B 73 573 163 HOH HOH . I 6 HOH B 74 574 177 HOH HOH . I 6 HOH B 75 575 192 HOH HOH . I 6 HOH B 76 576 153 HOH HOH . I 6 HOH B 77 577 191 HOH HOH . I 6 HOH B 78 578 162 HOH HOH . I 6 HOH B 79 579 121 HOH HOH . I 6 HOH B 80 580 180 HOH HOH . I 6 HOH B 81 581 144 HOH HOH . I 6 HOH B 82 582 193 HOH HOH . I 6 HOH B 83 583 158 HOH HOH . I 6 HOH B 84 584 167 HOH HOH . I 6 HOH B 85 585 178 HOH HOH . I 6 HOH B 86 586 105 HOH HOH . I 6 HOH B 87 587 147 HOH HOH . I 6 HOH B 88 588 156 HOH HOH . I 6 HOH B 89 589 155 HOH HOH . I 6 HOH B 90 590 77 HOH HOH . I 6 HOH B 91 591 148 HOH HOH . I 6 HOH B 92 592 172 HOH HOH . I 6 HOH B 93 593 140 HOH HOH . I 6 HOH B 94 594 164 HOH HOH . I 6 HOH B 95 595 188 HOH HOH . I 6 HOH B 96 596 170 HOH HOH . I 6 HOH B 97 597 197 HOH HOH . I 6 HOH B 98 598 168 HOH HOH . I 6 HOH B 99 599 146 HOH HOH . I 6 HOH B 100 600 161 HOH HOH . I 6 HOH B 101 601 75 HOH HOH . I 6 HOH B 102 602 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 2 27.929 11.764 99.717 1 22.06 ? FE1 SF4 401 A 1 HETATM 2 FE FE2 SF4 . . . C 2 27.709 10.579 102.168 1 24.19 ? FE2 SF4 401 A 1 HETATM 3 FE FE3 SF4 . . . C 2 25.778 10.272 100.147 1 20.97 ? FE3 SF4 401 A 1 HETATM 4 FE FE4 SF4 . . . C 2 26.115 12.676 101.525 1 32.64 ? FE4 SF4 401 A 1 HETATM 5 S S1 SF4 . . . C 2 25.396 10.683 102.33 1 26.22 ? S1 SF4 401 A 1 HETATM 6 S S2 SF4 . . . C 2 25.783 12.313 99.245 1 22.41 ? S2 SF4 401 A 1 HETATM 7 S S3 SF4 . . . C 2 28.374 12.677 101.784 1 22.15 ? S3 SF4 401 A 1 HETATM 8 S S4 SF4 . . . C 2 27.917 9.571 100.063 1 20.41 ? S4 SF4 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #