data_6BXN # _model_server_result.job_id loGRLDE-8ZIIoZJDhaNnIA _model_server_result.datetime_utc '2024-11-23 02:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":900}' # _entry.id 6BXN # _exptl.entry_id 6BXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BXN _cell.length_a 31.476 _cell.length_b 127.19 _cell.length_c 142.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 65 A CYS 61 1_555 C FE1 SF4 . A SF4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A SG CYS 163 A CYS 159 1_555 C FE2 SF4 . A SF4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 A SG CYS 287 A CYS 283 1_555 C FE3 SF4 . A SF4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 C FE4 SF4 . A SF4 900 1_555 D N SAM . A SAM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 C FE4 SF4 . A SF4 900 1_555 D O SAM . A SAM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc6 B SG CYS 65 B CYS 61 1_555 E FE1 SF4 . B SF4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 B SG CYS 163 B CYS 159 1_555 E FE2 SF4 . B SF4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc8 B SG CYS 287 B CYS 283 1_555 E FE3 SF4 . B SF4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc9 E FE4 SF4 . B SF4 900 1_555 F O SAM . B SAM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc10 E FE4 SF4 . B SF4 900 1_555 F N SAM . B SAM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 341 n n FE1 S3 SF4 sing 342 n n FE1 S4 SF4 sing 343 n n FE2 S1 SF4 sing 344 n n FE2 S3 SF4 sing 345 n n FE2 S4 SF4 sing 346 n n FE3 S1 SF4 sing 347 n n FE3 S2 SF4 sing 348 n n FE3 S4 SF4 sing 349 n n FE4 S1 SF4 sing 350 n n FE4 S2 SF4 sing 351 n n FE4 S3 SF4 sing 352 n n # _atom_sites.entry_id 6BXN _atom_sites.fract_transf_matrix[1][1] 0.03177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 900 900 SF4 SF4 . D 3 SAM A 1 901 901 SAM SAM . E 2 SF4 B 1 900 900 SF4 SF4 . F 3 SAM B 1 901 901 SAM SAM . G 4 HOH A 1 1001 19 HOH HOH . G 4 HOH A 2 1002 177 HOH HOH . G 4 HOH A 3 1003 82 HOH HOH . G 4 HOH A 4 1004 58 HOH HOH . G 4 HOH A 5 1005 56 HOH HOH . G 4 HOH A 6 1006 36 HOH HOH . G 4 HOH A 7 1007 9 HOH HOH . G 4 HOH A 8 1008 88 HOH HOH . G 4 HOH A 9 1009 17 HOH HOH . G 4 HOH A 10 1010 25 HOH HOH . G 4 HOH A 11 1011 21 HOH HOH . G 4 HOH A 12 1012 1 HOH HOH . G 4 HOH A 13 1013 34 HOH HOH . G 4 HOH A 14 1014 26 HOH HOH . G 4 HOH A 15 1015 90 HOH HOH . G 4 HOH A 16 1016 23 HOH HOH . G 4 HOH A 17 1017 72 HOH HOH . G 4 HOH A 18 1018 14 HOH HOH . G 4 HOH A 19 1019 51 HOH HOH . G 4 HOH A 20 1020 13 HOH HOH . G 4 HOH A 21 1021 86 HOH HOH . G 4 HOH A 22 1022 7 HOH HOH . G 4 HOH A 23 1023 16 HOH HOH . G 4 HOH A 24 1024 52 HOH HOH . G 4 HOH A 25 1025 69 HOH HOH . G 4 HOH A 26 1026 5 HOH HOH . G 4 HOH A 27 1027 6 HOH HOH . G 4 HOH A 28 1028 3 HOH HOH . G 4 HOH A 29 1029 31 HOH HOH . G 4 HOH A 30 1030 62 HOH HOH . G 4 HOH A 31 1031 67 HOH HOH . G 4 HOH A 32 1032 2 HOH HOH . G 4 HOH A 33 1033 8 HOH HOH . G 4 HOH A 34 1034 12 HOH HOH . G 4 HOH A 35 1035 50 HOH HOH . G 4 HOH A 36 1036 45 HOH HOH . G 4 HOH A 37 1037 28 HOH HOH . G 4 HOH A 38 1038 39 HOH HOH . G 4 HOH A 39 1039 66 HOH HOH . G 4 HOH A 40 1040 94 HOH HOH . G 4 HOH A 41 1041 71 HOH HOH . G 4 HOH A 42 1042 80 HOH HOH . G 4 HOH A 43 1043 43 HOH HOH . G 4 HOH A 44 1044 57 HOH HOH . G 4 HOH A 45 1045 54 HOH HOH . G 4 HOH A 46 1046 78 HOH HOH . G 4 HOH A 47 1047 55 HOH HOH . G 4 HOH A 48 1048 76 HOH HOH . G 4 HOH A 49 1049 93 HOH HOH . G 4 HOH A 50 1050 4 HOH HOH . G 4 HOH A 51 1051 44 HOH HOH . G 4 HOH A 52 1052 87 HOH HOH . G 4 HOH A 53 1053 46 HOH HOH . G 4 HOH A 54 1054 15 HOH HOH . G 4 HOH A 55 1055 47 HOH HOH . G 4 HOH A 56 1056 49 HOH HOH . G 4 HOH A 57 1057 24 HOH HOH . G 4 HOH A 58 1058 61 HOH HOH . G 4 HOH A 59 1059 11 HOH HOH . G 4 HOH A 60 1060 40 HOH HOH . G 4 HOH A 61 1061 37 HOH HOH . G 4 HOH A 62 1062 42 HOH HOH . G 4 HOH A 63 1063 75 HOH HOH . G 4 HOH A 64 1064 33 HOH HOH . G 4 HOH A 65 1065 151 HOH HOH . G 4 HOH A 66 1066 30 HOH HOH . G 4 HOH A 67 1067 41 HOH HOH . G 4 HOH A 68 1068 77 HOH HOH . G 4 HOH A 69 1069 85 HOH HOH . G 4 HOH A 70 1070 63 HOH HOH . G 4 HOH A 71 1071 70 HOH HOH . G 4 HOH A 72 1072 48 HOH HOH . G 4 HOH A 73 1073 35 HOH HOH . G 4 HOH A 74 1074 73 HOH HOH . G 4 HOH A 75 1075 20 HOH HOH . G 4 HOH A 76 1076 29 HOH HOH . G 4 HOH A 77 1077 81 HOH HOH . G 4 HOH A 78 1078 91 HOH HOH . G 4 HOH A 79 1079 79 HOH HOH . G 4 HOH A 80 1080 92 HOH HOH . G 4 HOH A 81 1081 10 HOH HOH . G 4 HOH A 82 1082 38 HOH HOH . G 4 HOH A 83 1083 64 HOH HOH . G 4 HOH A 84 1084 83 HOH HOH . G 4 HOH A 85 1085 84 HOH HOH . G 4 HOH A 86 1086 18 HOH HOH . G 4 HOH A 87 1087 207 HOH HOH . G 4 HOH A 88 1088 60 HOH HOH . G 4 HOH A 89 1089 101 HOH HOH . G 4 HOH A 90 1090 201 HOH HOH . G 4 HOH A 91 1091 74 HOH HOH . G 4 HOH A 92 1092 22 HOH HOH . H 4 HOH B 1 1001 144 HOH HOH . H 4 HOH B 2 1002 97 HOH HOH . H 4 HOH B 3 1003 118 HOH HOH . H 4 HOH B 4 1004 196 HOH HOH . H 4 HOH B 5 1005 100 HOH HOH . H 4 HOH B 6 1006 138 HOH HOH . H 4 HOH B 7 1007 195 HOH HOH . H 4 HOH B 8 1008 125 HOH HOH . H 4 HOH B 9 1009 210 HOH HOH . H 4 HOH B 10 1010 96 HOH HOH . H 4 HOH B 11 1011 219 HOH HOH . H 4 HOH B 12 1012 129 HOH HOH . H 4 HOH B 13 1013 189 HOH HOH . H 4 HOH B 14 1014 191 HOH HOH . H 4 HOH B 15 1015 199 HOH HOH . H 4 HOH B 16 1016 161 HOH HOH . H 4 HOH B 17 1017 157 HOH HOH . H 4 HOH B 18 1018 173 HOH HOH . H 4 HOH B 19 1019 192 HOH HOH . H 4 HOH B 20 1020 171 HOH HOH . H 4 HOH B 21 1021 158 HOH HOH . H 4 HOH B 22 1022 194 HOH HOH . H 4 HOH B 23 1023 167 HOH HOH . H 4 HOH B 24 1024 98 HOH HOH . H 4 HOH B 25 1025 166 HOH HOH . H 4 HOH B 26 1026 132 HOH HOH . H 4 HOH B 27 1027 181 HOH HOH . H 4 HOH B 28 1028 220 HOH HOH . H 4 HOH B 29 1029 186 HOH HOH . H 4 HOH B 30 1030 130 HOH HOH . H 4 HOH B 31 1031 142 HOH HOH . H 4 HOH B 32 1032 131 HOH HOH . H 4 HOH B 33 1033 168 HOH HOH . H 4 HOH B 34 1034 159 HOH HOH . H 4 HOH B 35 1035 200 HOH HOH . H 4 HOH B 36 1036 127 HOH HOH . H 4 HOH B 37 1037 116 HOH HOH . H 4 HOH B 38 1038 120 HOH HOH . H 4 HOH B 39 1039 185 HOH HOH . H 4 HOH B 40 1040 216 HOH HOH . H 4 HOH B 41 1041 134 HOH HOH . H 4 HOH B 42 1042 126 HOH HOH . H 4 HOH B 43 1043 190 HOH HOH . H 4 HOH B 44 1044 145 HOH HOH . H 4 HOH B 45 1045 147 HOH HOH . H 4 HOH B 46 1046 176 HOH HOH . H 4 HOH B 47 1047 208 HOH HOH . H 4 HOH B 48 1048 209 HOH HOH . H 4 HOH B 49 1049 65 HOH HOH . H 4 HOH B 50 1050 153 HOH HOH . H 4 HOH B 51 1051 119 HOH HOH . H 4 HOH B 52 1052 152 HOH HOH . H 4 HOH B 53 1053 179 HOH HOH . H 4 HOH B 54 1054 115 HOH HOH . H 4 HOH B 55 1055 136 HOH HOH . H 4 HOH B 56 1056 169 HOH HOH . H 4 HOH B 57 1057 154 HOH HOH . H 4 HOH B 58 1058 104 HOH HOH . H 4 HOH B 59 1059 107 HOH HOH . H 4 HOH B 60 1060 133 HOH HOH . H 4 HOH B 61 1061 146 HOH HOH . H 4 HOH B 62 1062 214 HOH HOH . H 4 HOH B 63 1063 103 HOH HOH . H 4 HOH B 64 1064 128 HOH HOH . H 4 HOH B 65 1065 123 HOH HOH . H 4 HOH B 66 1066 164 HOH HOH . H 4 HOH B 67 1067 121 HOH HOH . H 4 HOH B 68 1068 170 HOH HOH . H 4 HOH B 69 1069 124 HOH HOH . H 4 HOH B 70 1070 149 HOH HOH . H 4 HOH B 71 1071 68 HOH HOH . H 4 HOH B 72 1072 180 HOH HOH . H 4 HOH B 73 1073 184 HOH HOH . H 4 HOH B 74 1074 187 HOH HOH . H 4 HOH B 75 1075 122 HOH HOH . H 4 HOH B 76 1076 95 HOH HOH . H 4 HOH B 77 1077 108 HOH HOH . H 4 HOH B 78 1078 105 HOH HOH . H 4 HOH B 79 1079 217 HOH HOH . H 4 HOH B 80 1080 198 HOH HOH . H 4 HOH B 81 1081 155 HOH HOH . H 4 HOH B 82 1082 148 HOH HOH . H 4 HOH B 83 1083 106 HOH HOH . H 4 HOH B 84 1084 203 HOH HOH . H 4 HOH B 85 1085 211 HOH HOH . H 4 HOH B 86 1086 114 HOH HOH . H 4 HOH B 87 1087 174 HOH HOH . H 4 HOH B 88 1088 102 HOH HOH . H 4 HOH B 89 1089 218 HOH HOH . H 4 HOH B 90 1090 213 HOH HOH . H 4 HOH B 91 1091 197 HOH HOH . H 4 HOH B 92 1092 206 HOH HOH . H 4 HOH B 93 1093 137 HOH HOH . H 4 HOH B 94 1094 143 HOH HOH . H 4 HOH B 95 1095 178 HOH HOH . H 4 HOH B 96 1096 204 HOH HOH . H 4 HOH B 97 1097 205 HOH HOH . H 4 HOH B 98 1098 135 HOH HOH . H 4 HOH B 99 1099 193 HOH HOH . H 4 HOH B 100 1100 117 HOH HOH . H 4 HOH B 101 1101 112 HOH HOH . H 4 HOH B 102 1102 160 HOH HOH . H 4 HOH B 103 1103 202 HOH HOH . H 4 HOH B 104 1104 172 HOH HOH . H 4 HOH B 105 1105 139 HOH HOH . H 4 HOH B 106 1106 162 HOH HOH . H 4 HOH B 107 1107 110 HOH HOH . H 4 HOH B 108 1108 188 HOH HOH . H 4 HOH B 109 1109 141 HOH HOH . H 4 HOH B 110 1110 109 HOH HOH . H 4 HOH B 111 1111 212 HOH HOH . H 4 HOH B 112 1112 156 HOH HOH . H 4 HOH B 113 1113 183 HOH HOH . H 4 HOH B 114 1114 163 HOH HOH . H 4 HOH B 115 1115 113 HOH HOH . H 4 HOH B 116 1116 99 HOH HOH . H 4 HOH B 117 1117 111 HOH HOH . H 4 HOH B 118 1118 150 HOH HOH . H 4 HOH B 119 1119 182 HOH HOH . H 4 HOH B 120 1120 140 HOH HOH . H 4 HOH B 121 1121 32 HOH HOH . H 4 HOH B 122 1122 89 HOH HOH . H 4 HOH B 123 1123 27 HOH HOH . H 4 HOH B 124 1124 175 HOH HOH . H 4 HOH B 125 1125 53 HOH HOH . H 4 HOH B 126 1126 165 HOH HOH . H 4 HOH B 127 1127 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 2 10.616 18.004 50.968 1 27.54 ? FE1 SF4 900 A 1 HETATM 2 FE FE2 SF4 . . . C 2 10.84 19.724 53.162 1 33.63 ? FE2 SF4 900 A 1 HETATM 3 FE FE3 SF4 . . . C 2 12.731 19.79 51.144 1 26.72 ? FE3 SF4 900 A 1 HETATM 4 FE FE4 SF4 . . . C 2 12.524 17.585 52.852 1 38.11 ? FE4 SF4 900 A 1 HETATM 5 S S1 SF4 . . . C 2 13.152 19.711 53.315 1 30.62 ? S1 SF4 900 A 1 HETATM 6 S S2 SF4 . . . C 2 12.791 17.618 50.568 1 26.21 ? S2 SF4 900 A 1 HETATM 7 S S3 SF4 . . . C 2 10.297 17.525 53.174 1 31.56 ? S3 SF4 900 A 1 HETATM 8 S S4 SF4 . . . C 2 10.54 20.256 50.941 1 27.17 ? S4 SF4 900 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #