data_6BXW # _model_server_result.job_id hXYesa6S0d0ynqJcJYQhjQ _model_server_result.datetime_utc '2024-11-05 05:40:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6BXW # _exptl.entry_id 6BXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BXW _cell.length_a 45.47 _cell.length_b 62.36 _cell.length_c 89.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 6BXW _atom_sites.fract_transf_matrix[1][1] 0.021993 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01115 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR A 1 501 1 APR APR . C 3 HOH A 1 601 70 HOH HOH . C 3 HOH A 2 602 69 HOH HOH . C 3 HOH A 3 603 111 HOH HOH . C 3 HOH A 4 604 75 HOH HOH . C 3 HOH A 5 605 45 HOH HOH . C 3 HOH A 6 606 93 HOH HOH . C 3 HOH A 7 607 73 HOH HOH . C 3 HOH A 8 608 103 HOH HOH . C 3 HOH A 9 609 107 HOH HOH . C 3 HOH A 10 610 49 HOH HOH . C 3 HOH A 11 611 86 HOH HOH . C 3 HOH A 12 612 9 HOH HOH . C 3 HOH A 13 613 98 HOH HOH . C 3 HOH A 14 614 40 HOH HOH . C 3 HOH A 15 615 55 HOH HOH . C 3 HOH A 16 616 13 HOH HOH . C 3 HOH A 17 617 25 HOH HOH . C 3 HOH A 18 618 11 HOH HOH . C 3 HOH A 19 619 1 HOH HOH . C 3 HOH A 20 620 31 HOH HOH . C 3 HOH A 21 621 7 HOH HOH . C 3 HOH A 22 622 62 HOH HOH . C 3 HOH A 23 623 89 HOH HOH . C 3 HOH A 24 624 59 HOH HOH . C 3 HOH A 25 625 51 HOH HOH . C 3 HOH A 26 626 21 HOH HOH . C 3 HOH A 27 627 34 HOH HOH . C 3 HOH A 28 628 114 HOH HOH . C 3 HOH A 29 629 56 HOH HOH . C 3 HOH A 30 630 23 HOH HOH . C 3 HOH A 31 631 22 HOH HOH . C 3 HOH A 32 632 4 HOH HOH . C 3 HOH A 33 633 82 HOH HOH . C 3 HOH A 34 634 20 HOH HOH . C 3 HOH A 35 635 112 HOH HOH . C 3 HOH A 36 636 29 HOH HOH . C 3 HOH A 37 637 10 HOH HOH . C 3 HOH A 38 638 32 HOH HOH . C 3 HOH A 39 639 101 HOH HOH . C 3 HOH A 40 640 50 HOH HOH . C 3 HOH A 41 641 2 HOH HOH . C 3 HOH A 42 642 39 HOH HOH . C 3 HOH A 43 643 64 HOH HOH . C 3 HOH A 44 644 46 HOH HOH . C 3 HOH A 45 645 78 HOH HOH . C 3 HOH A 46 646 12 HOH HOH . C 3 HOH A 47 647 19 HOH HOH . C 3 HOH A 48 648 16 HOH HOH . C 3 HOH A 49 649 54 HOH HOH . C 3 HOH A 50 650 53 HOH HOH . C 3 HOH A 51 651 85 HOH HOH . C 3 HOH A 52 652 36 HOH HOH . C 3 HOH A 53 653 100 HOH HOH . C 3 HOH A 54 654 44 HOH HOH . C 3 HOH A 55 655 8 HOH HOH . C 3 HOH A 56 656 33 HOH HOH . C 3 HOH A 57 657 110 HOH HOH . C 3 HOH A 58 658 28 HOH HOH . C 3 HOH A 59 659 35 HOH HOH . C 3 HOH A 60 660 61 HOH HOH . C 3 HOH A 61 661 83 HOH HOH . C 3 HOH A 62 662 30 HOH HOH . C 3 HOH A 63 663 6 HOH HOH . C 3 HOH A 64 664 41 HOH HOH . C 3 HOH A 65 665 102 HOH HOH . C 3 HOH A 66 666 18 HOH HOH . C 3 HOH A 67 667 74 HOH HOH . C 3 HOH A 68 668 15 HOH HOH . C 3 HOH A 69 669 91 HOH HOH . C 3 HOH A 70 670 57 HOH HOH . C 3 HOH A 71 671 52 HOH HOH . C 3 HOH A 72 672 37 HOH HOH . C 3 HOH A 73 673 95 HOH HOH . C 3 HOH A 74 674 115 HOH HOH . C 3 HOH A 75 675 24 HOH HOH . C 3 HOH A 76 676 3 HOH HOH . C 3 HOH A 77 677 106 HOH HOH . C 3 HOH A 78 678 48 HOH HOH . C 3 HOH A 79 679 17 HOH HOH . C 3 HOH A 80 680 58 HOH HOH . C 3 HOH A 81 681 38 HOH HOH . C 3 HOH A 82 682 71 HOH HOH . C 3 HOH A 83 683 43 HOH HOH . C 3 HOH A 84 684 60 HOH HOH . C 3 HOH A 85 685 109 HOH HOH . C 3 HOH A 86 686 26 HOH HOH . C 3 HOH A 87 687 42 HOH HOH . C 3 HOH A 88 688 87 HOH HOH . C 3 HOH A 89 689 97 HOH HOH . C 3 HOH A 90 690 63 HOH HOH . C 3 HOH A 91 691 76 HOH HOH . C 3 HOH A 92 692 108 HOH HOH . C 3 HOH A 93 693 94 HOH HOH . C 3 HOH A 94 694 77 HOH HOH . C 3 HOH A 95 695 84 HOH HOH . C 3 HOH A 96 696 90 HOH HOH . C 3 HOH A 97 697 113 HOH HOH . C 3 HOH A 98 698 96 HOH HOH . C 3 HOH A 99 699 99 HOH HOH . C 3 HOH A 100 700 67 HOH HOH . C 3 HOH A 101 701 92 HOH HOH . C 3 HOH A 102 702 68 HOH HOH . C 3 HOH A 103 703 105 HOH HOH . C 3 HOH A 104 704 104 HOH HOH . C 3 HOH A 105 705 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . B 2 -3.436 2.993 -13.175 0.71 38.1 ? N1 APR 501 A 1 HETATM 2 C C2 APR . . . B 2 -3.114 1.942 -12.399 0.71 33.87 ? C2 APR 501 A 1 HETATM 3 N N3 APR . . . B 2 -2.761 0.738 -12.883 0.71 33.08 ? N3 APR 501 A 1 HETATM 4 C C4 APR . . . B 2 -2.708 0.516 -14.218 0.71 33.92 ? C4 APR 501 A 1 HETATM 5 C C5 APR . . . B 2 -3.046 1.615 -15.133 0.71 24.58 ? C5 APR 501 A 1 HETATM 6 C C6 APR . . . B 2 -3.426 2.911 -14.524 0.71 30.91 ? C6 APR 501 A 1 HETATM 7 N N6 APR . . . B 2 -3.752 3.977 -15.292 0.71 40.92 ? N6 APR 501 A 1 HETATM 8 N N7 APR . . . B 2 -2.915 1.13 -16.381 0.71 22.31 ? N7 APR 501 A 1 HETATM 9 C C8 APR . . . B 2 -2.524 -0.166 -16.276 0.71 36.86 ? C8 APR 501 A 1 HETATM 10 N N9 APR . . . B 2 -2.411 -0.533 -14.986 0.71 33.24 ? N9 APR 501 A 1 HETATM 11 C C1' APR . . . B 2 -1.999 -1.868 -14.49 0.71 34.88 ? C1' APR 501 A 1 HETATM 12 C C2' APR . . . B 2 -2.448 -2.953 -15.455 0.71 37.71 ? C2' APR 501 A 1 HETATM 13 O O2' APR . . . B 2 -3.513 -3.715 -14.879 0.71 53.02 ? O2' APR 501 A 1 HETATM 14 C C3' APR . . . B 2 -1.237 -3.838 -15.676 0.71 34.63 ? C3' APR 501 A 1 HETATM 15 O O3' APR . . . B 2 -1.501 -5.155 -15.185 0.71 40.64 ? O3' APR 501 A 1 HETATM 16 O O4' APR . . . B 2 -0.574 -1.927 -14.439 0.71 33.3 ? O4' APR 501 A 1 HETATM 17 C C4' APR . . . B 2 -0.105 -3.2 -14.882 0.71 26.22 ? C4' APR 501 A 1 HETATM 18 C C5' APR . . . B 2 1.168 -3.006 -15.696 0.71 31.12 ? C5' APR 501 A 1 HETATM 19 O O5' APR . . . B 2 0.892 -2.969 -17.095 0.71 25.86 ? O5' APR 501 A 1 HETATM 20 P PA APR . . . B 2 1.825 -2.104 -18.079 0.71 37.74 ? PA APR 501 A 1 HETATM 21 O O1A APR . . . B 2 1.964 -0.715 -17.507 0.71 30.82 ? O1A APR 501 A 1 HETATM 22 O O2A APR . . . B 2 1.328 -2.291 -19.493 0.71 41.54 ? O2A APR 501 A 1 HETATM 23 O O3A APR . . . B 2 3.225 -2.884 -17.917 0.71 35.19 ? O3A APR 501 A 1 HETATM 24 P PB APR . . . B 2 3.889 -3.694 -19.135 0.71 30.94 ? PB APR 501 A 1 HETATM 25 O O1B APR . . . B 2 5.089 -4.431 -18.594 0.71 32.33 ? O1B APR 501 A 1 HETATM 26 O O2B APR . . . B 2 2.778 -4.455 -19.819 0.71 34.19 ? O2B APR 501 A 1 HETATM 27 O O5D APR . . . B 2 4.414 -2.54 -20.127 0.71 34.09 ? O5D APR 501 A 1 HETATM 28 C C5D APR . . . B 2 4.539 -1.19 -19.69 0.71 34.67 ? C5D APR 501 A 1 HETATM 29 O O4D APR . . . B 2 3.447 0.536 -20.973 0.71 36.35 ? O4D APR 501 A 1 HETATM 30 O O1D APR . . . B 2 2.989 2.671 -20.129 0.71 29.75 ? O1D APR 501 A 1 HETATM 31 C C1D APR . . . B 2 3.78 1.924 -21.057 0.71 28.92 ? C1D APR 501 A 1 HETATM 32 O O2D APR . . . B 2 5.904 2.95 -21.602 0.71 26.12 ? O2D APR 501 A 1 HETATM 33 C C2D APR . . . B 2 5.25 2.057 -20.698 0.71 24.26 ? C2D APR 501 A 1 HETATM 34 O O3D APR . . . B 2 6.587 0.563 -22.032 0.71 38.23 ? O3D APR 501 A 1 HETATM 35 C C3D APR . . . B 2 5.824 0.662 -20.827 0.71 29.27 ? C3D APR 501 A 1 HETATM 36 C C4D APR . . . B 2 4.626 -0.27 -20.902 0.71 33.18 ? C4D APR 501 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 36 #