data_6BYA # _model_server_result.job_id YRhgQLK-jM_siurA2398sw _model_server_result.datetime_utc '2024-11-13 07:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1000}' # _entry.id 6BYA # _exptl.entry_id 6BYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.04 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BYA _cell.length_a 82.615 _cell.length_b 82.615 _cell.length_c 177.235 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,L 1 1 B,G,H,M 2 1 C,I,J,N 3 1 D,K,O 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C28 H33 Cl N4 O3' _chem_comp.formula_weight 509.04 _chem_comp.id 2LO _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 2LO sing 1 n n O2 C26 2LO sing 2 n y O2 N3 2LO sing 3 n y C26 C2 2LO doub 4 n y C11 C10 2LO sing 5 n n C11 C12 2LO sing 6 n n N C7 2LO sing 7 n y N C9 2LO doub 8 n y C8 C7 2LO doub 9 n y C8 C3 2LO sing 10 n y C10 C9 2LO sing 11 n n N3 C1 2LO doub 12 n y C2 C3 2LO sing 13 n n C2 C1 2LO sing 14 n y C7 C6 2LO sing 15 n y C9 N1 2LO sing 16 n y C12 C17 2LO doub 17 n y C12 C13 2LO sing 18 n y C17 C16 2LO sing 19 n y C3 C4 2LO doub 20 n y C1 C 2LO sing 21 n n C6 N1 2LO sing 22 n y C6 C5 2LO doub 23 n y N1 C19 2LO sing 24 n n C13 C14 2LO doub 25 n y C16 CL 2LO sing 26 n n C16 C15 2LO doub 27 n y C4 C5 2LO sing 28 n y C14 C15 2LO sing 29 n y C19 C20 2LO sing 30 n n C15 O 2LO sing 31 n n C20 C21 2LO sing 32 n n C20 N2 2LO sing 33 n n O C18 2LO sing 34 n n N2 C22 2LO sing 35 n n N2 C25 2LO sing 36 n n C22 C23 2LO sing 37 n n C25 C24 2LO sing 38 n n C23 O1 2LO sing 39 n n C24 O1 2LO sing 40 n n C18 H1 2LO sing 41 n n C18 H2 2LO sing 42 n n C18 H3 2LO sing 43 n n C14 H4 2LO sing 44 n n C13 H5 2LO sing 45 n n C17 H6 2LO sing 46 n n C11 H7 2LO sing 47 n n C11 H8 2LO sing 48 n n C10 H9 2LO sing 49 n n C10 H10 2LO sing 50 n n C19 H11 2LO sing 51 n n C19 H12 2LO sing 52 n n C20 H13 2LO sing 53 n n C25 H15 2LO sing 54 n n C25 H16 2LO sing 55 n n C24 H17 2LO sing 56 n n C24 H18 2LO sing 57 n n C23 H19 2LO sing 58 n n C23 H20 2LO sing 59 n n C22 H21 2LO sing 60 n n C22 H22 2LO sing 61 n n C21 H23 2LO sing 62 n n C21 H24 2LO sing 63 n n C21 H25 2LO sing 64 n n C5 H26 2LO sing 65 n n C4 H27 2LO sing 66 n n C8 H28 2LO sing 67 n n C27 H29 2LO sing 68 n n C27 H30 2LO sing 69 n n C27 H31 2LO sing 70 n n C H32 2LO sing 71 n n C H33 2LO sing 72 n n C H34 2LO sing 73 n n # _atom_sites.entry_id 6BYA _atom_sites.fract_transf_matrix[1][1] 0.012104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2LO A 1 201 1000 2LO XXX . F 3 UNX A 1 202 1000 UNX UNX . G 2 2LO B 1 201 1000 2LO XXX . H 3 UNX B 1 202 1002 UNX UNX . I 2 2LO C 1 1000 1000 2LO XXX . J 3 UNX C 1 1001 1001 UNX UNX . K 2 2LO D 1 1000 1000 2LO XXX . L 4 HOH A 1 301 5 HOH HOH . L 4 HOH A 2 302 13 HOH HOH . L 4 HOH A 3 303 30 HOH HOH . L 4 HOH A 4 304 29 HOH HOH . L 4 HOH A 5 305 65 HOH HOH . L 4 HOH A 6 306 59 HOH HOH . L 4 HOH A 7 307 4 HOH HOH . L 4 HOH A 8 308 21 HOH HOH . L 4 HOH A 9 309 33 HOH HOH . L 4 HOH A 10 310 90 HOH HOH . L 4 HOH A 11 311 32 HOH HOH . L 4 HOH A 12 312 94 HOH HOH . L 4 HOH A 13 313 91 HOH HOH . L 4 HOH A 14 314 8 HOH HOH . L 4 HOH A 15 315 64 HOH HOH . L 4 HOH A 16 316 27 HOH HOH . L 4 HOH A 17 317 98 HOH HOH . L 4 HOH A 18 318 31 HOH HOH . L 4 HOH A 19 319 19 HOH HOH . L 4 HOH A 20 320 129 HOH HOH . L 4 HOH A 21 321 85 HOH HOH . L 4 HOH A 22 322 86 HOH HOH . L 4 HOH A 23 323 25 HOH HOH . L 4 HOH A 24 324 92 HOH HOH . L 4 HOH A 25 325 24 HOH HOH . L 4 HOH A 26 326 96 HOH HOH . L 4 HOH A 27 327 60 HOH HOH . L 4 HOH A 28 328 26 HOH HOH . L 4 HOH A 29 329 63 HOH HOH . L 4 HOH A 30 330 99 HOH HOH . L 4 HOH A 31 331 89 HOH HOH . L 4 HOH A 32 332 15 HOH HOH . L 4 HOH A 33 333 66 HOH HOH . L 4 HOH A 34 334 95 HOH HOH . L 4 HOH A 35 335 22 HOH HOH . L 4 HOH A 36 336 23 HOH HOH . L 4 HOH A 37 337 93 HOH HOH . L 4 HOH A 38 338 3 HOH HOH . L 4 HOH A 39 339 97 HOH HOH . L 4 HOH A 40 340 20 HOH HOH . L 4 HOH A 41 341 58 HOH HOH . L 4 HOH A 42 342 88 HOH HOH . L 4 HOH A 43 343 28 HOH HOH . L 4 HOH A 44 344 7 HOH HOH . L 4 HOH A 45 345 62 HOH HOH . L 4 HOH A 46 346 87 HOH HOH . M 4 HOH B 1 301 73 HOH HOH . M 4 HOH B 2 302 41 HOH HOH . M 4 HOH B 3 303 70 HOH HOH . M 4 HOH B 4 304 35 HOH HOH . M 4 HOH B 5 305 9 HOH HOH . M 4 HOH B 6 306 72 HOH HOH . M 4 HOH B 7 307 102 HOH HOH . M 4 HOH B 8 308 1 HOH HOH . M 4 HOH B 9 309 39 HOH HOH . M 4 HOH B 10 310 14 HOH HOH . M 4 HOH B 11 311 17 HOH HOH . M 4 HOH B 12 312 40 HOH HOH . M 4 HOH B 13 313 34 HOH HOH . M 4 HOH B 14 314 42 HOH HOH . M 4 HOH B 15 315 101 HOH HOH . M 4 HOH B 16 316 61 HOH HOH . M 4 HOH B 17 317 2 HOH HOH . M 4 HOH B 18 318 110 HOH HOH . M 4 HOH B 19 319 71 HOH HOH . M 4 HOH B 20 320 108 HOH HOH . M 4 HOH B 21 321 45 HOH HOH . M 4 HOH B 22 322 38 HOH HOH . M 4 HOH B 23 323 68 HOH HOH . M 4 HOH B 24 324 36 HOH HOH . M 4 HOH B 25 325 12 HOH HOH . M 4 HOH B 26 326 105 HOH HOH . M 4 HOH B 27 327 43 HOH HOH . M 4 HOH B 28 328 6 HOH HOH . M 4 HOH B 29 329 16 HOH HOH . M 4 HOH B 30 330 44 HOH HOH . M 4 HOH B 31 331 104 HOH HOH . M 4 HOH B 32 332 111 HOH HOH . M 4 HOH B 33 333 109 HOH HOH . M 4 HOH B 34 334 100 HOH HOH . M 4 HOH B 35 335 67 HOH HOH . M 4 HOH B 36 336 37 HOH HOH . M 4 HOH B 37 337 46 HOH HOH . M 4 HOH B 38 338 120 HOH HOH . M 4 HOH B 39 339 103 HOH HOH . M 4 HOH B 40 340 107 HOH HOH . M 4 HOH B 41 341 69 HOH HOH . N 4 HOH C 1 1101 122 HOH HOH . N 4 HOH C 2 1102 124 HOH HOH . N 4 HOH C 3 1103 119 HOH HOH . N 4 HOH C 4 1104 51 HOH HOH . N 4 HOH C 5 1105 50 HOH HOH . N 4 HOH C 6 1106 47 HOH HOH . N 4 HOH C 7 1107 48 HOH HOH . N 4 HOH C 8 1108 49 HOH HOH . N 4 HOH C 9 1109 53 HOH HOH . N 4 HOH C 10 1110 123 HOH HOH . N 4 HOH C 11 1111 11 HOH HOH . N 4 HOH C 12 1112 52 HOH HOH . N 4 HOH C 13 1113 18 HOH HOH . N 4 HOH C 14 1114 54 HOH HOH . N 4 HOH C 15 1115 128 HOH HOH . N 4 HOH C 16 1116 121 HOH HOH . N 4 HOH C 17 1117 10 HOH HOH . N 4 HOH C 18 1118 125 HOH HOH . N 4 HOH C 19 1119 114 HOH HOH . N 4 HOH C 20 1120 118 HOH HOH . N 4 HOH C 21 1121 78 HOH HOH . N 4 HOH C 22 1122 82 HOH HOH . N 4 HOH C 23 1123 57 HOH HOH . N 4 HOH C 24 1124 56 HOH HOH . N 4 HOH C 25 1125 117 HOH HOH . N 4 HOH C 26 1126 112 HOH HOH . N 4 HOH C 27 1127 113 HOH HOH . N 4 HOH C 28 1128 116 HOH HOH . N 4 HOH C 29 1129 76 HOH HOH . N 4 HOH C 30 1130 79 HOH HOH . N 4 HOH C 31 1131 84 HOH HOH . N 4 HOH C 32 1132 83 HOH HOH . N 4 HOH C 33 1133 74 HOH HOH . N 4 HOH C 34 1134 75 HOH HOH . N 4 HOH C 35 1135 55 HOH HOH . N 4 HOH C 36 1136 106 HOH HOH . N 4 HOH C 37 1137 81 HOH HOH . N 4 HOH C 38 1138 80 HOH HOH . N 4 HOH C 39 1139 77 HOH HOH . N 4 HOH C 40 1140 115 HOH HOH . O 4 HOH D 1 1101 127 HOH HOH . O 4 HOH D 2 1102 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL 2LO . . . I 2 -24.672 -18.855 -42.177 1 64.13 ? CL 2LO 1000 C 1 HETATM 2 C C16 2LO . . . I 2 -24.211 -18.221 -43.731 1 55.81 ? C16 2LO 1000 C 1 HETATM 3 C C15 2LO . . . I 2 -25.068 -18.38 -44.819 1 52.98 ? C15 2LO 1000 C 1 HETATM 4 O O 2LO . . . I 2 -26.236 -19.052 -44.585 1 51.18 ? O 2LO 1000 C 1 HETATM 5 C C18 2LO . . . I 2 -27.203 -19.087 -45.629 1 50.81 ? C18 2LO 1000 C 1 HETATM 6 C C14 2LO . . . I 2 -24.708 -17.811 -46.042 1 49.92 ? C14 2LO 1000 C 1 HETATM 7 C C13 2LO . . . I 2 -23.529 -17.092 -46.153 1 46.69 ? C13 2LO 1000 C 1 HETATM 8 C C17 2LO . . . I 2 -23.031 -17.51 -43.849 1 49.68 ? C17 2LO 1000 C 1 HETATM 9 C C12 2LO . . . I 2 -22.681 -16.919 -45.061 1 48.38 ? C12 2LO 1000 C 1 HETATM 10 C C11 2LO . . . I 2 -21.424 -16.086 -45.173 1 47.62 ? C11 2LO 1000 C 1 HETATM 11 C C10 2LO . . . I 2 -21.599 -14.771 -45.966 1 44.75 ? C10 2LO 1000 C 1 HETATM 12 C C9 2LO . . . I 2 -22.12 -13.663 -45.116 1 42.16 ? C9 2LO 1000 C 1 HETATM 13 N N1 2LO . . . I 2 -21.309 -12.864 -44.348 1 41.9 ? N1 2LO 1000 C 1 HETATM 14 C C19 2LO . . . I 2 -19.847 -12.894 -44.314 1 46.14 ? C19 2LO 1000 C 1 HETATM 15 C C20 2LO . . . I 2 -19.233 -11.619 -44.892 1 48.56 ? C20 2LO 1000 C 1 HETATM 16 N N2 2LO . . . I 2 -17.905 -11.368 -44.281 1 51.81 ? N2 2LO 1000 C 1 HETATM 17 C C25 2LO . . . I 2 -16.843 -12.356 -44.542 1 53.48 ? C25 2LO 1000 C 1 HETATM 18 C C24 2LO . . . I 2 -15.723 -12.172 -43.549 1 53.73 ? C24 2LO 1000 C 1 HETATM 19 O O1 2LO . . . I 2 -15.196 -10.847 -43.592 1 54.24 ? O1 2LO 1000 C 1 HETATM 20 C C23 2LO . . . I 2 -16.221 -9.886 -43.333 1 52.89 ? C23 2LO 1000 C 1 HETATM 21 C C22 2LO . . . I 2 -17.361 -10.003 -44.316 1 52.35 ? C22 2LO 1000 C 1 HETATM 22 C C21 2LO . . . I 2 -19.279 -11.695 -46.416 1 42.48 ? C21 2LO 1000 C 1 HETATM 23 C C6 2LO . . . I 2 -22.146 -12.08 -43.568 1 38.81 ? C6 2LO 1000 C 1 HETATM 24 C C5 2LO . . . I 2 -21.889 -11.124 -42.594 1 39.37 ? C5 2LO 1000 C 1 HETATM 25 C C4 2LO . . . I 2 -22.969 -10.579 -41.92 1 37.55 ? C4 2LO 1000 C 1 HETATM 26 N N 2LO . . . I 2 -23.398 -13.436 -44.913 1 40.28 ? N 2LO 1000 C 1 HETATM 27 C C7 2LO . . . I 2 -23.435 -12.469 -43.904 1 38.93 ? C7 2LO 1000 C 1 HETATM 28 C C8 2LO . . . I 2 -24.516 -11.929 -43.209 1 35.62 ? C8 2LO 1000 C 1 HETATM 29 C C3 2LO . . . I 2 -24.277 -10.978 -42.214 1 38.02 ? C3 2LO 1000 C 1 HETATM 30 C C2 2LO . . . I 2 -25.425 -10.359 -41.508 1 41.47 ? C2 2LO 1000 C 1 HETATM 31 C C26 2LO . . . I 2 -25.644 -10.329 -40.167 1 43.86 ? C26 2LO 1000 C 1 HETATM 32 C C27 2LO . . . I 2 -24.87 -10.777 -38.981 1 39.51 ? C27 2LO 1000 C 1 HETATM 33 O O2 2LO . . . I 2 -26.835 -9.755 -39.925 1 48.48 ? O2 2LO 1000 C 1 HETATM 34 N N3 2LO . . . I 2 -27.415 -9.381 -41.173 1 43.24 ? N3 2LO 1000 C 1 HETATM 35 C C1 2LO . . . I 2 -26.562 -9.742 -42.086 1 41.35 ? C1 2LO 1000 C 1 HETATM 36 C C 2LO . . . I 2 -26.852 -9.461 -43.525 1 40.82 ? C 2LO 1000 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 36 #