data_6BYA
#
_model_server_result.job_id            AIgU9-THPEUHtz5S7MHTPA 
_model_server_result.datetime_utc      '2024-11-13 07:22:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    6BYA 
#
_exptl.entry_id    6BYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              509.04 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BYA 
_cell.length_a            82.615 
_cell.length_b            82.615 
_cell.length_c            177.235 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,L 1 1 
B,G,H,M 2 1 
C,I,J,N 3 1 
D,K,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C28 H33 Cl N4 O3' 
_chem_comp.formula_weight    509.04 
_chem_comp.id                2LO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[2-(3-chloro-4-methoxyphenyl)ethyl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(2S)-2-(morpholin-4-yl)propyl]-1H-benzimidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C26 2LO sing 1 n n 
O2 C26 2LO sing 2 n y 
O2 N3 2LO sing 3 n y 
C26 C2 2LO doub 4 n y 
C11 C10 2LO sing 5 n n 
C11 C12 2LO sing 6 n n 
N C7 2LO sing 7 n y 
N C9 2LO doub 8 n y 
C8 C7 2LO doub 9 n y 
C8 C3 2LO sing 10 n y 
C10 C9 2LO sing 11 n n 
N3 C1 2LO doub 12 n y 
C2 C3 2LO sing 13 n n 
C2 C1 2LO sing 14 n y 
C7 C6 2LO sing 15 n y 
C9 N1 2LO sing 16 n y 
C12 C17 2LO doub 17 n y 
C12 C13 2LO sing 18 n y 
C17 C16 2LO sing 19 n y 
C3 C4 2LO doub 20 n y 
C1 C 2LO sing 21 n n 
C6 N1 2LO sing 22 n y 
C6 C5 2LO doub 23 n y 
N1 C19 2LO sing 24 n n 
C13 C14 2LO doub 25 n y 
C16 CL 2LO sing 26 n n 
C16 C15 2LO doub 27 n y 
C4 C5 2LO sing 28 n y 
C14 C15 2LO sing 29 n y 
C19 C20 2LO sing 30 n n 
C15 O 2LO sing 31 n n 
C20 C21 2LO sing 32 n n 
C20 N2 2LO sing 33 n n 
O C18 2LO sing 34 n n 
N2 C22 2LO sing 35 n n 
N2 C25 2LO sing 36 n n 
C22 C23 2LO sing 37 n n 
C25 C24 2LO sing 38 n n 
C23 O1 2LO sing 39 n n 
C24 O1 2LO sing 40 n n 
C18 H1 2LO sing 41 n n 
C18 H2 2LO sing 42 n n 
C18 H3 2LO sing 43 n n 
C14 H4 2LO sing 44 n n 
C13 H5 2LO sing 45 n n 
C17 H6 2LO sing 46 n n 
C11 H7 2LO sing 47 n n 
C11 H8 2LO sing 48 n n 
C10 H9 2LO sing 49 n n 
C10 H10 2LO sing 50 n n 
C19 H11 2LO sing 51 n n 
C19 H12 2LO sing 52 n n 
C20 H13 2LO sing 53 n n 
C25 H15 2LO sing 54 n n 
C25 H16 2LO sing 55 n n 
C24 H17 2LO sing 56 n n 
C24 H18 2LO sing 57 n n 
C23 H19 2LO sing 58 n n 
C23 H20 2LO sing 59 n n 
C22 H21 2LO sing 60 n n 
C22 H22 2LO sing 61 n n 
C21 H23 2LO sing 62 n n 
C21 H24 2LO sing 63 n n 
C21 H25 2LO sing 64 n n 
C5 H26 2LO sing 65 n n 
C4 H27 2LO sing 66 n n 
C8 H28 2LO sing 67 n n 
C27 H29 2LO sing 68 n n 
C27 H30 2LO sing 69 n n 
C27 H31 2LO sing 70 n n 
C H32 2LO sing 71 n n 
C H33 2LO sing 72 n n 
C H34 2LO sing 73 n n 
#
_atom_sites.entry_id                     6BYA 
_atom_sites.fract_transf_matrix[1][1]    0.012104 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005642 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 2LO A 1 201 1000 2LO XXX . 
F 3 UNX A 1 202 1000 UNX UNX . 
G 2 2LO B 1 201 1000 2LO XXX . 
H 3 UNX B 1 202 1002 UNX UNX . 
I 2 2LO C 1 1000 1000 2LO XXX . 
J 3 UNX C 1 1001 1001 UNX UNX . 
K 2 2LO D 1 1000 1000 2LO XXX . 
L 4 HOH A 1 301 5 HOH HOH . 
L 4 HOH A 2 302 13 HOH HOH . 
L 4 HOH A 3 303 30 HOH HOH . 
L 4 HOH A 4 304 29 HOH HOH . 
L 4 HOH A 5 305 65 HOH HOH . 
L 4 HOH A 6 306 59 HOH HOH . 
L 4 HOH A 7 307 4 HOH HOH . 
L 4 HOH A 8 308 21 HOH HOH . 
L 4 HOH A 9 309 33 HOH HOH . 
L 4 HOH A 10 310 90 HOH HOH . 
L 4 HOH A 11 311 32 HOH HOH . 
L 4 HOH A 12 312 94 HOH HOH . 
L 4 HOH A 13 313 91 HOH HOH . 
L 4 HOH A 14 314 8 HOH HOH . 
L 4 HOH A 15 315 64 HOH HOH . 
L 4 HOH A 16 316 27 HOH HOH . 
L 4 HOH A 17 317 98 HOH HOH . 
L 4 HOH A 18 318 31 HOH HOH . 
L 4 HOH A 19 319 19 HOH HOH . 
L 4 HOH A 20 320 129 HOH HOH . 
L 4 HOH A 21 321 85 HOH HOH . 
L 4 HOH A 22 322 86 HOH HOH . 
L 4 HOH A 23 323 25 HOH HOH . 
L 4 HOH A 24 324 92 HOH HOH . 
L 4 HOH A 25 325 24 HOH HOH . 
L 4 HOH A 26 326 96 HOH HOH . 
L 4 HOH A 27 327 60 HOH HOH . 
L 4 HOH A 28 328 26 HOH HOH . 
L 4 HOH A 29 329 63 HOH HOH . 
L 4 HOH A 30 330 99 HOH HOH . 
L 4 HOH A 31 331 89 HOH HOH . 
L 4 HOH A 32 332 15 HOH HOH . 
L 4 HOH A 33 333 66 HOH HOH . 
L 4 HOH A 34 334 95 HOH HOH . 
L 4 HOH A 35 335 22 HOH HOH . 
L 4 HOH A 36 336 23 HOH HOH . 
L 4 HOH A 37 337 93 HOH HOH . 
L 4 HOH A 38 338 3 HOH HOH . 
L 4 HOH A 39 339 97 HOH HOH . 
L 4 HOH A 40 340 20 HOH HOH . 
L 4 HOH A 41 341 58 HOH HOH . 
L 4 HOH A 42 342 88 HOH HOH . 
L 4 HOH A 43 343 28 HOH HOH . 
L 4 HOH A 44 344 7 HOH HOH . 
L 4 HOH A 45 345 62 HOH HOH . 
L 4 HOH A 46 346 87 HOH HOH . 
M 4 HOH B 1 301 73 HOH HOH . 
M 4 HOH B 2 302 41 HOH HOH . 
M 4 HOH B 3 303 70 HOH HOH . 
M 4 HOH B 4 304 35 HOH HOH . 
M 4 HOH B 5 305 9 HOH HOH . 
M 4 HOH B 6 306 72 HOH HOH . 
M 4 HOH B 7 307 102 HOH HOH . 
M 4 HOH B 8 308 1 HOH HOH . 
M 4 HOH B 9 309 39 HOH HOH . 
M 4 HOH B 10 310 14 HOH HOH . 
M 4 HOH B 11 311 17 HOH HOH . 
M 4 HOH B 12 312 40 HOH HOH . 
M 4 HOH B 13 313 34 HOH HOH . 
M 4 HOH B 14 314 42 HOH HOH . 
M 4 HOH B 15 315 101 HOH HOH . 
M 4 HOH B 16 316 61 HOH HOH . 
M 4 HOH B 17 317 2 HOH HOH . 
M 4 HOH B 18 318 110 HOH HOH . 
M 4 HOH B 19 319 71 HOH HOH . 
M 4 HOH B 20 320 108 HOH HOH . 
M 4 HOH B 21 321 45 HOH HOH . 
M 4 HOH B 22 322 38 HOH HOH . 
M 4 HOH B 23 323 68 HOH HOH . 
M 4 HOH B 24 324 36 HOH HOH . 
M 4 HOH B 25 325 12 HOH HOH . 
M 4 HOH B 26 326 105 HOH HOH . 
M 4 HOH B 27 327 43 HOH HOH . 
M 4 HOH B 28 328 6 HOH HOH . 
M 4 HOH B 29 329 16 HOH HOH . 
M 4 HOH B 30 330 44 HOH HOH . 
M 4 HOH B 31 331 104 HOH HOH . 
M 4 HOH B 32 332 111 HOH HOH . 
M 4 HOH B 33 333 109 HOH HOH . 
M 4 HOH B 34 334 100 HOH HOH . 
M 4 HOH B 35 335 67 HOH HOH . 
M 4 HOH B 36 336 37 HOH HOH . 
M 4 HOH B 37 337 46 HOH HOH . 
M 4 HOH B 38 338 120 HOH HOH . 
M 4 HOH B 39 339 103 HOH HOH . 
M 4 HOH B 40 340 107 HOH HOH . 
M 4 HOH B 41 341 69 HOH HOH . 
N 4 HOH C 1 1101 122 HOH HOH . 
N 4 HOH C 2 1102 124 HOH HOH . 
N 4 HOH C 3 1103 119 HOH HOH . 
N 4 HOH C 4 1104 51 HOH HOH . 
N 4 HOH C 5 1105 50 HOH HOH . 
N 4 HOH C 6 1106 47 HOH HOH . 
N 4 HOH C 7 1107 48 HOH HOH . 
N 4 HOH C 8 1108 49 HOH HOH . 
N 4 HOH C 9 1109 53 HOH HOH . 
N 4 HOH C 10 1110 123 HOH HOH . 
N 4 HOH C 11 1111 11 HOH HOH . 
N 4 HOH C 12 1112 52 HOH HOH . 
N 4 HOH C 13 1113 18 HOH HOH . 
N 4 HOH C 14 1114 54 HOH HOH . 
N 4 HOH C 15 1115 128 HOH HOH . 
N 4 HOH C 16 1116 121 HOH HOH . 
N 4 HOH C 17 1117 10 HOH HOH . 
N 4 HOH C 18 1118 125 HOH HOH . 
N 4 HOH C 19 1119 114 HOH HOH . 
N 4 HOH C 20 1120 118 HOH HOH . 
N 4 HOH C 21 1121 78 HOH HOH . 
N 4 HOH C 22 1122 82 HOH HOH . 
N 4 HOH C 23 1123 57 HOH HOH . 
N 4 HOH C 24 1124 56 HOH HOH . 
N 4 HOH C 25 1125 117 HOH HOH . 
N 4 HOH C 26 1126 112 HOH HOH . 
N 4 HOH C 27 1127 113 HOH HOH . 
N 4 HOH C 28 1128 116 HOH HOH . 
N 4 HOH C 29 1129 76 HOH HOH . 
N 4 HOH C 30 1130 79 HOH HOH . 
N 4 HOH C 31 1131 84 HOH HOH . 
N 4 HOH C 32 1132 83 HOH HOH . 
N 4 HOH C 33 1133 74 HOH HOH . 
N 4 HOH C 34 1134 75 HOH HOH . 
N 4 HOH C 35 1135 55 HOH HOH . 
N 4 HOH C 36 1136 106 HOH HOH . 
N 4 HOH C 37 1137 81 HOH HOH . 
N 4 HOH C 38 1138 80 HOH HOH . 
N 4 HOH C 39 1139 77 HOH HOH . 
N 4 HOH C 40 1140 115 HOH HOH . 
O 4 HOH D 1 1101 127 HOH HOH . 
O 4 HOH D 2 1102 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL 2LO . . . E 2 -51.673 15.358 -14.249 1 74.97 ? CL 2LO 201 A 1 
HETATM 2 C C16 2LO . . . E 2 -50.424 14.776 -15.297 1 60.08 ? C16 2LO 201 A 1 
HETATM 3 C C15 2LO . . . E 2 -49.312 14.132 -14.757 1 54.9 ? C15 2LO 201 A 1 
HETATM 4 O O 2LO . . . E 2 -49.143 14.239 -13.402 1 55.07 ? O 2LO 201 A 1 
HETATM 5 C C18 2LO . . . E 2 -47.893 13.819 -12.848 1 52.54 ? C18 2LO 201 A 1 
HETATM 6 C C14 2LO . . . E 2 -48.418 13.514 -15.624 1 47.47 ? C14 2LO 201 A 1 
HETATM 7 C C13 2LO . . . E 2 -48.608 13.609 -16.994 1 45.54 ? C13 2LO 201 A 1 
HETATM 8 C C17 2LO . . . E 2 -50.593 14.889 -16.662 1 52.02 ? C17 2LO 201 A 1 
HETATM 9 C C12 2LO . . . E 2 -49.663 14.338 -17.533 1 47.45 ? C12 2LO 201 A 1 
HETATM 10 C C11 2LO . . . E 2 -49.686 14.73 -18.996 1 40.41 ? C11 2LO 201 A 1 
HETATM 11 C C10 2LO . . . E 2 -49.284 13.691 -20.032 1 34.73 ? C10 2LO 201 A 1 
HETATM 12 C C9 2LO . . . E 2 -47.815 13.614 -20.289 1 36.97 ? C9 2LO 201 A 1 
HETATM 13 N N1 2LO . . . E 2 -47.244 12.567 -20.968 1 36.8 ? N1 2LO 201 A 1 
HETATM 14 C C19 2LO . . . E 2 -47.963 11.427 -21.552 1 39.04 ? C19 2LO 201 A 1 
HETATM 15 C C20 2LO . . . E 2 -47.925 11.403 -23.083 1 40.72 ? C20 2LO 201 A 1 
HETATM 16 N N2 2LO . . . E 2 -48.598 10.206 -23.64 1 52.41 ? N2 2LO 201 A 1 
HETATM 17 C C25 2LO . . . E 2 -48.398 9.883 -25.063 1 57.81 ? C25 2LO 201 A 1 
HETATM 18 C C24 2LO . . . E 2 -49.488 8.942 -25.521 1 61.07 ? C24 2LO 201 A 1 
HETATM 19 O O1 2LO . . . E 2 -49.512 7.743 -24.734 1 63.26 ? O1 2LO 201 A 1 
HETATM 20 C C23 2LO . . . E 2 -49.654 8.04 -23.34 1 59.87 ? C23 2LO 201 A 1 
HETATM 21 C C22 2LO . . . E 2 -48.566 8.962 -22.857 1 56.68 ? C22 2LO 201 A 1 
HETATM 22 C C21 2LO . . . E 2 -48.53 12.667 -23.668 1 33.31 ? C21 2LO 201 A 1 
HETATM 23 C C6 2LO . . . E 2 -45.873 12.78 -20.946 1 33.77 ? C6 2LO 201 A 1 
HETATM 24 C C5 2LO . . . E 2 -44.808 12.05 -21.455 1 30.82 ? C5 2LO 201 A 1 
HETATM 25 C C4 2LO . . . E 2 -43.527 12.509 -21.193 1 30.67 ? C4 2LO 201 A 1 
HETATM 26 N N 2LO . . . E 2 -46.925 14.482 -19.847 1 33.55 ? N 2LO 201 A 1 
HETATM 27 C C7 2LO . . . E 2 -45.692 13.964 -20.234 1 32.8 ? C7 2LO 201 A 1 
HETATM 28 C C8 2LO . . . E 2 -44.397 14.426 -19.984 1 31.92 ? C8 2LO 201 A 1 
HETATM 29 C C3 2LO . . . E 2 -43.312 13.673 -20.444 1 33.13 ? C3 2LO 201 A 1 
HETATM 30 C C2 2LO . . . E 2 -41.931 14.073 -20.084 1 36.08 ? C2 2LO 201 A 1 
HETATM 31 C C26 2LO . . . E 2 -41.034 13.332 -19.376 1 37.96 ? C26 2LO 201 A 1 
HETATM 32 C C27 2LO . . . E 2 -41.066 11.982 -18.758 1 33.83 ? C27 2LO 201 A 1 
HETATM 33 O O2 2LO . . . E 2 -39.882 14.021 -19.258 1 42.85 ? O2 2LO 201 A 1 
HETATM 34 N N3 2LO . . . E 2 -40.037 15.272 -19.923 1 40.43 ? N3 2LO 201 A 1 
HETATM 35 C C1 2LO . . . E 2 -41.245 15.266 -20.416 1 37.81 ? C1 2LO 201 A 1 
HETATM 36 C C 2LO . . . E 2 -41.702 16.383 -21.295 1 36.76 ? C 2LO 201 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           36 
#