data_6BYR # _model_server_result.job_id 6sg5ExEFRYxW_I88Sphcfg _model_server_result.datetime_utc '2024-11-04 22:48:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6byr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 6BYR # _exptl.entry_id 6BYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BYR _cell.length_a 166.504 _cell.length_b 166.504 _cell.length_c 332.701 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,E,F,G 2 1 C,D,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 193 A PHE 193 1_555 A N SEP 194 A SEP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 194 A SEP 194 1_555 A N GLU 195 A GLU 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C TRP 251 A TRP 251 1_555 A N TPO 252 A TPO 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C TPO 252 A TPO 252 1_555 A N LEU 253 A LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C VAL 392 A VAL 392 1_555 A N SEP 393 A SEP 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C SEP 393 A SEP 393 1_555 A N ILE 394 A ILE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 C C PHE 193 C PHE 193 1_555 C N SEP 194 C SEP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 C C SEP 194 C SEP 194 1_555 C N GLU 195 C GLU 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 C C TRP 251 C TRP 251 1_555 C N TPO 252 C TPO 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 C C TPO 252 C TPO 252 1_555 C N LEU 253 C LEU 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 C C VAL 392 C VAL 392 1_555 C N SEP 393 C SEP 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 C C SEP 393 C SEP 393 1_555 C N ILE 394 C ILE 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 226 A ASN 226 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc2 A OD1 ASP 239 A ASP 239 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc3 A OD2 ASP 239 A ASP 239 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A OD2 ASP 239 A ASP 239 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc5 E O1G ATP . A ATP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc6 E O1B ATP . A ATP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc7 E O2G ATP . A ATP 501 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc8 E O3B ATP . A ATP 501 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc9 E O1A ATP . A ATP 501 1_555 G MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc10 C OD1 ASN 226 C ASN 226 1_555 J MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc11 C OD1 ASP 239 C ASP 239 1_555 I MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc12 C OD2 ASP 239 C ASP 239 1_555 I MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc13 H O3G ATP . C ATP 501 1_555 I MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc14 H O2B ATP . C ATP 501 1_555 I MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc15 H O2G ATP . C ATP 501 1_555 J MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc16 H O3B ATP . C ATP 501 1_555 J MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc17 H O2A ATP . C ATP 501 1_555 J MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BYR _atom_sites.fract_transf_matrix[1][1] 0.006006 _atom_sites.fract_transf_matrix[1][2] 0.003467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ATP A 1 501 501 ATP ATP . F 4 MG A 1 502 502 MG MG . G 4 MG A 1 503 503 MG MG . H 3 ATP C 1 501 501 ATP ATP . I 4 MG C 1 502 502 MG MG . J 4 MG C 1 503 503 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x 53.371 _atom_site.Cartn_y -42.645 _atom_site.Cartn_z 7.581 _atom_site.occupancy 0.63 _atom_site.B_iso_or_equiv 86.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #