data_6BZ4 # _model_server_result.job_id ishrTa-aFuATQlvCcWDj0Q _model_server_result.datetime_utc '2024-10-10 05:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":507}' # _entry.id 6BZ4 # _exptl.entry_id 6BZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BZ4 _cell.length_a 49.324 _cell.length_b 79.502 _cell.length_c 138.221 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 2 7 1 FUC NAG C1 O1 . O6 HO6 . sing 7 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 10 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 11 ? 3 6 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 501 NAG 2 n C NAG 2 C 2 NAG A 502 NAG 2 n C BMA 3 C 3 BMA A 503 BMA 2 n C MAN 4 C 4 MAN A 504 MAN 2 n C NAG 5 C 5 NAG A 505 NAG 2 n C MAN 6 C 6 MAN A 506 MAN 2 n C FUC 7 C 7 FUC A 507 FUC 3 n D NAG 1 D 1 NAG B 501 NAG 3 n D NAG 2 D 2 NAG B 502 NAG 3 n D BMA 3 D 3 BMA B 503 BMA 3 n D MAN 4 D 4 MAN B 504 MAN 3 n D NAG 5 D 5 NAG B 506 NAG 3 n D MAN 6 D 6 MAN B 505 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 261 1_555 A SG CYS 85 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 131 A CYS 367 1_555 A SG CYS 189 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 25 B CYS 261 1_555 B SG CYS 85 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 131 B CYS 367 1_555 B SG CYS 189 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 61 A ASN 297 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? covale ? covale2 B ND2 ASN 61 B ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.237 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale6 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale10 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale11 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale12 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 6BZ4 _atom_sites.fract_transf_matrix[1][1] 0.020274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 EDO B 1 507 507 EDO EDO . F 5 HOH A 1 601 601 HOH HOH . F 5 HOH A 2 602 602 HOH HOH . F 5 HOH A 3 603 603 HOH HOH . F 5 HOH A 4 604 604 HOH HOH . F 5 HOH A 5 605 605 HOH HOH . F 5 HOH A 6 606 606 HOH HOH . F 5 HOH A 7 607 607 HOH HOH . F 5 HOH A 8 608 608 HOH HOH . F 5 HOH A 9 609 609 HOH HOH . F 5 HOH A 10 610 610 HOH HOH . F 5 HOH A 11 611 611 HOH HOH . F 5 HOH A 12 612 612 HOH HOH . F 5 HOH A 13 613 613 HOH HOH . F 5 HOH A 14 614 614 HOH HOH . F 5 HOH A 15 615 615 HOH HOH . F 5 HOH A 16 616 616 HOH HOH . F 5 HOH A 17 617 617 HOH HOH . F 5 HOH A 18 618 618 HOH HOH . F 5 HOH A 19 619 619 HOH HOH . F 5 HOH A 20 620 620 HOH HOH . F 5 HOH A 21 621 621 HOH HOH . F 5 HOH A 22 622 622 HOH HOH . F 5 HOH A 23 623 623 HOH HOH . F 5 HOH A 24 624 624 HOH HOH . G 5 HOH B 1 601 601 HOH HOH . G 5 HOH B 2 602 602 HOH HOH . G 5 HOH B 3 603 603 HOH HOH . G 5 HOH B 4 604 604 HOH HOH . G 5 HOH B 5 605 605 HOH HOH . G 5 HOH B 6 606 606 HOH HOH . G 5 HOH B 7 607 607 HOH HOH . G 5 HOH B 8 608 608 HOH HOH . G 5 HOH B 9 609 609 HOH HOH . G 5 HOH B 10 610 610 HOH HOH . G 5 HOH B 11 611 611 HOH HOH . G 5 HOH B 12 612 612 HOH HOH . G 5 HOH B 13 613 613 HOH HOH . G 5 HOH B 14 614 614 HOH HOH . G 5 HOH B 15 615 615 HOH HOH . G 5 HOH B 16 616 616 HOH HOH . G 5 HOH B 17 617 617 HOH HOH . G 5 HOH B 18 618 618 HOH HOH . G 5 HOH B 19 619 619 HOH HOH . G 5 HOH B 20 620 620 HOH HOH . G 5 HOH B 21 621 621 HOH HOH . G 5 HOH B 22 622 622 HOH HOH . G 5 HOH B 23 623 623 HOH HOH . G 5 HOH B 24 624 624 HOH HOH . G 5 HOH B 25 625 625 HOH HOH . G 5 HOH B 26 626 626 HOH HOH . G 5 HOH B 27 627 627 HOH HOH . G 5 HOH B 28 628 628 HOH HOH . G 5 HOH B 29 629 629 HOH HOH . G 5 HOH B 30 630 630 HOH HOH . G 5 HOH B 31 631 631 HOH HOH . G 5 HOH B 32 632 632 HOH HOH . G 5 HOH B 33 633 633 HOH HOH . G 5 HOH B 34 634 634 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 -29.267 6.093 29.424 1 53.38 ? C1 EDO 507 B 1 HETATM 2 O O1 EDO . . . E 4 -27.962 5.61 29.07 1 54.38 ? O1 EDO 507 B 1 HETATM 3 C C2 EDO . . . E 4 -29.967 6.659 28.194 1 52.88 ? C2 EDO 507 B 1 HETATM 4 O O2 EDO . . . E 4 -30.206 5.613 27.243 1 53.05 ? O2 EDO 507 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #