data_6BZD # _model_server_result.job_id RZvoKUch3AWmC2dncz7ZIg _model_server_result.datetime_utc '2025-07-03 17:36:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 6BZD # _exptl.entry_id 6BZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.5 _cell.angle_gamma 90 _cell.entry_id 6BZD _cell.length_a 76.366 _cell.length_b 60 _cell.length_c 125.786 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J 1 1 C,D,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E OG SER 10 G SER 505 1_555 G C1 NAG . G NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.228 ? covale ? covale2 F OG SER 10 K SER 505 1_555 H C1 NAG . K NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6BZD _atom_sites.fract_transf_matrix[1][1] 0.013095 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000114 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG G 1 601 601 NAG NAG . H 3 NAG K 1 601 601 NAG NAG . I 4 HOH A 1 301 301 HOH HOH . I 4 HOH A 2 302 302 HOH HOH . I 4 HOH A 3 303 303 HOH HOH . I 4 HOH A 4 304 304 HOH HOH . I 4 HOH A 5 305 305 HOH HOH . I 4 HOH A 6 306 306 HOH HOH . I 4 HOH A 7 307 307 HOH HOH . I 4 HOH A 8 308 308 HOH HOH . I 4 HOH A 9 309 309 HOH HOH . I 4 HOH A 10 310 310 HOH HOH . I 4 HOH A 11 311 311 HOH HOH . I 4 HOH A 12 312 312 HOH HOH . I 4 HOH A 13 313 313 HOH HOH . I 4 HOH A 14 314 314 HOH HOH . I 4 HOH A 15 315 315 HOH HOH . I 4 HOH A 16 316 316 HOH HOH . I 4 HOH A 17 317 317 HOH HOH . I 4 HOH A 18 318 318 HOH HOH . I 4 HOH A 19 319 319 HOH HOH . I 4 HOH A 20 320 320 HOH HOH . I 4 HOH A 21 321 321 HOH HOH . I 4 HOH A 22 322 322 HOH HOH . I 4 HOH A 23 323 323 HOH HOH . I 4 HOH A 24 324 324 HOH HOH . I 4 HOH A 25 325 325 HOH HOH . I 4 HOH A 26 326 326 HOH HOH . I 4 HOH A 27 327 327 HOH HOH . J 4 HOH B 1 301 301 HOH HOH . J 4 HOH B 2 302 302 HOH HOH . J 4 HOH B 3 303 303 HOH HOH . J 4 HOH B 4 304 304 HOH HOH . J 4 HOH B 5 305 305 HOH HOH . J 4 HOH B 6 306 306 HOH HOH . J 4 HOH B 7 307 307 HOH HOH . J 4 HOH B 8 308 308 HOH HOH . J 4 HOH B 9 309 309 HOH HOH . J 4 HOH B 10 310 310 HOH HOH . J 4 HOH B 11 311 311 HOH HOH . J 4 HOH B 12 312 312 HOH HOH . J 4 HOH B 13 313 313 HOH HOH . J 4 HOH B 14 314 314 HOH HOH . J 4 HOH B 15 315 315 HOH HOH . J 4 HOH B 16 316 316 HOH HOH . J 4 HOH B 17 317 317 HOH HOH . J 4 HOH B 18 318 318 HOH HOH . J 4 HOH B 19 319 319 HOH HOH . J 4 HOH B 20 320 320 HOH HOH . J 4 HOH B 21 321 321 HOH HOH . J 4 HOH B 22 322 322 HOH HOH . J 4 HOH B 23 323 323 HOH HOH . J 4 HOH B 24 324 324 HOH HOH . J 4 HOH B 25 325 325 HOH HOH . J 4 HOH B 26 326 326 HOH HOH . J 4 HOH B 27 327 327 HOH HOH . J 4 HOH B 28 328 328 HOH HOH . J 4 HOH B 29 329 329 HOH HOH . J 4 HOH B 30 330 330 HOH HOH . J 4 HOH B 31 331 331 HOH HOH . J 4 HOH B 32 332 332 HOH HOH . J 4 HOH B 33 333 333 HOH HOH . J 4 HOH B 34 334 334 HOH HOH . K 4 HOH C 1 301 301 HOH HOH . K 4 HOH C 2 302 302 HOH HOH . K 4 HOH C 3 303 303 HOH HOH . K 4 HOH C 4 304 304 HOH HOH . K 4 HOH C 5 305 305 HOH HOH . K 4 HOH C 6 306 306 HOH HOH . K 4 HOH C 7 307 307 HOH HOH . K 4 HOH C 8 308 308 HOH HOH . K 4 HOH C 9 309 309 HOH HOH . L 4 HOH D 1 301 301 HOH HOH . L 4 HOH D 2 302 302 HOH HOH . L 4 HOH D 3 303 303 HOH HOH . L 4 HOH D 4 304 304 HOH HOH . L 4 HOH D 5 305 305 HOH HOH . L 4 HOH D 6 306 306 HOH HOH . L 4 HOH D 7 307 307 HOH HOH . L 4 HOH D 8 308 308 HOH HOH . L 4 HOH D 9 309 309 HOH HOH . L 4 HOH D 10 310 310 HOH HOH . L 4 HOH D 11 311 311 HOH HOH . L 4 HOH D 12 312 312 HOH HOH . L 4 HOH D 13 313 313 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 3 5.454 8.613 47.09 1 152.64 ? C1 NAG 601 G 1 HETATM 2 C C2 NAG . . . G 3 4.024 8.34 47.621 1 145.59 ? C2 NAG 601 G 1 HETATM 3 C C3 NAG . . . G 3 2.961 9.063 46.806 1 146.18 ? C3 NAG 601 G 1 HETATM 4 C C4 NAG . . . G 3 3.313 10.535 46.562 1 147.19 ? C4 NAG 601 G 1 HETATM 5 C C5 NAG . . . G 3 4.699 10.625 45.978 1 145.18 ? C5 NAG 601 G 1 HETATM 6 C C6 NAG . . . G 3 5.146 12.042 45.684 1 139.57 ? C6 NAG 601 G 1 HETATM 7 C C7 NAG . . . G 3 2.871 6.244 48.227 1 129.29 ? C7 NAG 601 G 1 HETATM 8 C C8 NAG . . . G 3 2.823 4.744 48.006 1 126.05 ? C8 NAG 601 G 1 HETATM 9 N N2 NAG . . . G 3 3.792 6.883 47.524 1 137.35 ? N2 NAG 601 G 1 HETATM 10 O O3 NAG . . . G 3 1.754 8.987 47.536 1 147.94 ? O3 NAG 601 G 1 HETATM 11 O O4 NAG . . . G 3 2.445 11.165 45.619 1 149.72 ? O4 NAG 601 G 1 HETATM 12 O O5 NAG . . . G 3 5.61 10.049 46.914 1 151.45 ? O5 NAG 601 G 1 HETATM 13 O O6 NAG . . . G 3 4.849 12.925 46.757 1 139.33 ? O6 NAG 601 G 1 HETATM 14 O O7 NAG . . . G 3 2.12 6.827 48.985 1 128.34 ? O7 NAG 601 G 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #