data_6C09 # _model_server_result.job_id pKhSqZa3B7PKEKJ59ysQMQ _model_server_result.datetime_utc '2024-11-21 23:37:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 6C09 # _exptl.entry_id 6C09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.503 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl hexadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C09 _cell.length_a 173.17 _cell.length_b 173.17 _cell.length_c 82.47 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 105 A CYS 102 1_555 A SG CYS 170 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 210 A CYS 207 1_555 A SG CYS 265 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 B SG CYS 28 B CYS 25 1_555 B SG CYS 83 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 C SG CYS 24 C CYS 23 1_555 C SG CYS 91 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf5 C SG CYS 134 C CYS 150 1_555 C SG CYS 184 C CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 159 C CYS 175 1_555 D SG CYS 174 D CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? disulf ? disulf7 D SG CYS 24 D CYS 23 1_555 D SG CYS 93 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf8 D SG CYS 148 D CYS 159 1_555 D SG CYS 213 D CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A ND2 ASN 23 A ASN 20 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? metalc ? metalc1 A OD1 ASP 244 A ASP 241 1_555 I K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc2 D O SER 97 D SER 108 1_555 O K K . D K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc3 D O ARG 102 D ARG 113 1_555 O K K . D K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? # _chem_comp.formula 'C19 H38 O4' _chem_comp.formula_weight 330.503 _chem_comp.id EKG _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C24 EKG sing 123 n n C24 C22 EKG sing 124 n n C22 C21 EKG sing 125 n n C22 O23 EKG sing 126 n n C21 O20 EKG sing 127 n n O20 C1 EKG sing 128 n n C1 O19 EKG doub 129 n n C1 C2 EKG sing 130 n n C2 C3 EKG sing 131 n n C3 C4 EKG sing 132 n n C19 C15 EKG sing 133 n n C4 C5 EKG sing 134 n n C15 C14 EKG sing 135 n n C5 C6 EKG sing 136 n n C14 C13 EKG sing 137 n n C6 C7 EKG sing 138 n n C13 C12 EKG sing 139 n n C11 C12 EKG sing 140 n n C11 C10 EKG sing 141 n n C8 C7 EKG sing 142 n n C8 C9 EKG sing 143 n n C9 C10 EKG sing 144 n n C19 H1 EKG sing 145 n n C19 H2 EKG sing 146 n n C19 H3 EKG sing 147 n n C8 H4 EKG sing 148 n n C8 H5 EKG sing 149 n n C7 H6 EKG sing 150 n n C7 H7 EKG sing 151 n n C15 H8 EKG sing 152 n n C15 H9 EKG sing 153 n n C9 H10 EKG sing 154 n n C9 H11 EKG sing 155 n n C6 H12 EKG sing 156 n n C6 H13 EKG sing 157 n n C21 H14 EKG sing 158 n n C21 H15 EKG sing 159 n n C14 H16 EKG sing 160 n n C14 H17 EKG sing 161 n n C10 H18 EKG sing 162 n n C10 H19 EKG sing 163 n n C5 H20 EKG sing 164 n n C5 H21 EKG sing 165 n n C13 H22 EKG sing 166 n n C13 H23 EKG sing 167 n n C11 H24 EKG sing 168 n n C11 H25 EKG sing 169 n n C4 H26 EKG sing 170 n n C4 H27 EKG sing 171 n n C12 H28 EKG sing 172 n n C12 H29 EKG sing 173 n n C3 H30 EKG sing 174 n n C3 H31 EKG sing 175 n n C2 H32 EKG sing 176 n n C2 H33 EKG sing 177 n n C24 H34 EKG sing 178 n n C24 H35 EKG sing 179 n n C22 H36 EKG sing 180 n n O23 H37 EKG sing 181 n n O25 H38 EKG sing 182 n n # _atom_sites.entry_id 6C09 _atom_sites.fract_transf_matrix[1][1] 0.005775 _atom_sites.fract_transf_matrix[1][2] 0.003334 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 301 301 NAG NAG . F 6 EKG A 1 302 2 EKG M16 . G 7 D10 A 1 303 101 D10 D10 . H 7 D10 A 1 304 201 D10 D10 . I 8 K A 1 305 91 K K . J 8 K A 1 306 101 K K . K 9 EDO C 1 301 1 EDO EDO . L 9 EDO C 1 302 3 EDO EDO . M 9 EDO C 1 303 5 EDO EDO . N 10 PEG C 1 304 712 PEG 1PE . O 8 K D 1 301 1 K K . P 11 HOH A 1 401 102 HOH HOH . P 11 HOH A 2 402 13 HOH HOH . P 11 HOH A 3 403 52 HOH HOH . Q 11 HOH B 1 201 25 HOH HOH . R 11 HOH C 1 401 19 HOH HOH . R 11 HOH C 2 402 1 HOH HOH . R 11 HOH C 3 403 24 HOH HOH . R 11 HOH C 4 404 23 HOH HOH . R 11 HOH C 5 405 17 HOH HOH . R 11 HOH C 6 406 9 HOH HOH . S 11 HOH D 1 401 6 HOH HOH . S 11 HOH D 2 402 42 HOH HOH . S 11 HOH D 3 403 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C19 EKG . . . F 6 96.018 -23.836 -18.602 1 62.09 ? C19 EKG 302 A 1 HETATM 2 C C8 EKG . . . F 6 93.653 -28.23 -14.568 1 71.58 ? C8 EKG 302 A 1 HETATM 3 C C7 EKG . . . F 6 93.655 -29.75 -14.461 1 72.5 ? C7 EKG 302 A 1 HETATM 4 C C15 EKG . . . F 6 96.123 -23.748 -17.072 1 65.92 ? C15 EKG 302 A 1 HETATM 5 C C9 EKG . . . F 6 92.662 -27.541 -13.628 1 72.35 ? C9 EKG 302 A 1 HETATM 6 C C6 EKG . . . F 6 92.954 -30.453 -15.615 1 73.31 ? C6 EKG 302 A 1 HETATM 7 C C21 EKG . . . F 6 93.584 -33.893 -22.998 1 110.66 ? C21 EKG 302 A 1 HETATM 8 C C14 EKG . . . F 6 94.938 -23.048 -16.395 1 70.19 ? C14 EKG 302 A 1 HETATM 9 C C10 EKG . . . F 6 93.004 -26.057 -13.411 1 75.8 ? C10 EKG 302 A 1 HETATM 10 C C5 EKG . . . F 6 93.945 -30.921 -16.677 1 75.45 ? C5 EKG 302 A 1 HETATM 11 C C13 EKG . . . F 6 94.793 -23.492 -14.94 1 75.47 ? C13 EKG 302 A 1 HETATM 12 C C11 EKG . . . F 6 92.85 -25.149 -14.645 1 76.54 ? C11 EKG 302 A 1 HETATM 13 C C4 EKG . . . F 6 93.229 -31.519 -17.879 1 79.02 ? C4 EKG 302 A 1 HETATM 14 C C12 EKG . . . F 6 93.355 -23.71 -14.447 1 76.9 ? C12 EKG 302 A 1 HETATM 15 C C3 EKG . . . F 6 93.455 -30.698 -19.142 1 85.85 ? C3 EKG 302 A 1 HETATM 16 C C2 EKG . . . F 6 94.002 -31.603 -20.245 1 96.01 ? C2 EKG 302 A 1 HETATM 17 C C24 EKG . . . F 6 91.911 -35.052 -24.482 1 119.33 ? C24 EKG 302 A 1 HETATM 18 C C22 EKG . . . F 6 92.293 -34.705 -23.051 1 116.32 ? C22 EKG 302 A 1 HETATM 19 O O19 EKG . . . F 6 91.785 -31.984 -21.013 1 105.94 ? O19 EKG 302 A 1 HETATM 20 C C1 EKG . . . F 6 92.971 -32.055 -21.272 1 103.24 ? C1 EKG 302 A 1 HETATM 21 O O20 EKG . . . F 6 93.352 -32.535 -22.61 1 106.89 ? O20 EKG 302 A 1 HETATM 22 O O23 EKG . . . F 6 92.453 -35.926 -22.325 1 120.81 ? O23 EKG 302 A 1 HETATM 23 O O25 EKG . . . F 6 90.894 -36.069 -24.511 1 120.94 ? O25 EKG 302 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #