data_6C0B # _model_server_result.job_id 1sux6WEKnueK8Gnv5S4XSQ _model_server_result.datetime_utc '2024-11-06 09:21:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1901}' # _entry.id 6C0B # _exptl.entry_id 6C0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C0B _cell.length_a 74.611 _cell.length_b 175.613 _cell.length_c 174.423 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 B,F,G,I 2 1,2 A,C,D,E,H 2 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 351.226 174.423 3 'crystal symmetry operation' 5_555 x+1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 37.3055 87.8065 0 4 'crystal symmetry operation' 8_566 x+1/2,-y+3/2,-z+1 1 0 0 0 -1 0 0 0 -1 37.3055 263.4195 174.423 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 39 B CYS 39 1_555 B SG CYS 100 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf2 B SG CYS 47 B CYS 47 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 B SG CYS 84 B CYS 84 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 B SG CYS 110 B CYS 110 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf5 B SG CYS 114 B CYS 114 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 B ND2 ASN 53 B ASN 53 1_555 F C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 6C0B _atom_sites.fract_transf_matrix[1][1] 0.013403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MLI A 1 1901 1 MLI MLI . D 3 MLI A 1 1902 2 MLI MLI . E 3 MLI A 1 1903 3 MLI MLI . F 4 NAG B 1 201 200 NAG NAG . G 5 PAM B 1 202 400 PAM PAM . H 6 HOH A 1 2001 7 HOH HOH . H 6 HOH A 2 2002 3 HOH HOH . H 6 HOH A 3 2003 23 HOH HOH . H 6 HOH A 4 2004 29 HOH HOH . H 6 HOH A 5 2005 8 HOH HOH . H 6 HOH A 6 2006 36 HOH HOH . H 6 HOH A 7 2007 26 HOH HOH . H 6 HOH A 8 2008 10 HOH HOH . H 6 HOH A 9 2009 35 HOH HOH . H 6 HOH A 10 2010 15 HOH HOH . H 6 HOH A 11 2011 6 HOH HOH . H 6 HOH A 12 2012 4 HOH HOH . H 6 HOH A 13 2013 9 HOH HOH . H 6 HOH A 14 2014 20 HOH HOH . H 6 HOH A 15 2015 1 HOH HOH . H 6 HOH A 16 2016 18 HOH HOH . H 6 HOH A 17 2017 5 HOH HOH . H 6 HOH A 18 2018 16 HOH HOH . H 6 HOH A 19 2019 22 HOH HOH . H 6 HOH A 20 2020 19 HOH HOH . H 6 HOH A 21 2021 17 HOH HOH . H 6 HOH A 22 2022 37 HOH HOH . H 6 HOH A 23 2023 34 HOH HOH . I 6 HOH B 1 301 2 HOH HOH . I 6 HOH B 2 302 11 HOH HOH . I 6 HOH B 3 303 12 HOH HOH . I 6 HOH B 4 304 32 HOH HOH . I 6 HOH B 5 305 27 HOH HOH . I 6 HOH B 6 306 13 HOH HOH . I 6 HOH B 7 307 21 HOH HOH . I 6 HOH B 8 308 24 HOH HOH . I 6 HOH B 9 309 14 HOH HOH . I 6 HOH B 10 310 25 HOH HOH . I 6 HOH B 11 311 31 HOH HOH . I 6 HOH B 12 312 30 HOH HOH . I 6 HOH B 13 313 33 HOH HOH . I 6 HOH B 14 314 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 3 38.101 122.593 98.657 1 85.78 ? C1 MLI 1901 A 1 HETATM 2 C C2 MLI . . . C 3 37.519 121.182 98.576 1 81.82 ? C2 MLI 1901 A 1 HETATM 3 C C3 MLI . . . C 3 36.988 123.547 99.093 1 87.18 ? C3 MLI 1901 A 1 HETATM 4 O O6 MLI . . . C 3 36.821 120.858 97.58 1 80.91 ? O6 MLI 1901 A 1 HETATM 5 O O7 MLI . . . C 3 37.721 120.358 99.511 1 69.67 ? O7 MLI 1901 A 1 HETATM 6 O O8 MLI . . . C 3 36.558 124.396 98.267 1 89.71 ? O8 MLI 1901 A 1 HETATM 7 O O9 MLI . . . C 3 36.504 123.482 100.264 1 86.16 ? O9 MLI 1901 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #