data_6C0V # _model_server_result.job_id XOkK2w4zuWlBs5ywP6iU5g _model_server_result.datetime_utc '2025-03-06 01:33:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 6C0V # _exptl.entry_id 6C0V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C0V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 434 A SER 434 1_555 E MG MG . A MG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc2 A OE1 GLN 475 A GLN 475 1_555 E MG MG . A MG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc3 A OG SER 1077 A SER 1077 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 A OE1 GLN 1118 A GLN 1118 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc5 B O3G ATP . A ATP 1301 1_555 E MG MG . A MG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc6 B O2B ATP . A ATP 1301 1_555 E MG MG . A MG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc7 C O2G ATP . A ATP 1302 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 C O2B ATP . A ATP 1302 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6C0V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1301 1 ATP ATP . C 2 ATP A 1 1302 2 ATP ATP . D 3 MG A 1 1303 1 MG MG . E 3 MG A 1 1304 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 170.599 189.577 126.048 1 282.35 ? PG ATP 1301 A 1 HETATM 2 O O1G ATP . . . B 2 170.81 190.537 124.904 1 280.97 ? O1G ATP 1301 A 1 HETATM 3 O O2G ATP . . . B 2 171.485 188.355 125.997 1 284.03 ? O2G ATP 1301 A 1 HETATM 4 O O3G ATP . . . B 2 169.148 189.258 126.311 1 290.99 ? O3G ATP 1301 A 1 HETATM 5 P PB ATP . . . B 2 170.602 191.848 127.769 1 269.29 ? PB ATP 1301 A 1 HETATM 6 O O1B ATP . . . B 2 171.164 192.824 126.765 1 273.66 ? O1B ATP 1301 A 1 HETATM 7 O O2B ATP . . . B 2 169.117 191.833 128.039 1 275.41 ? O2B ATP 1301 A 1 HETATM 8 O O3B ATP . . . B 2 171.101 190.367 127.367 1 275.66 ? O3B ATP 1301 A 1 HETATM 9 P PA ATP . . . B 2 170.896 191.487 130.559 1 255.95 ? PA ATP 1301 A 1 HETATM 10 O O1A ATP . . . B 2 170.356 190.102 130.296 1 258.74 ? O1A ATP 1301 A 1 HETATM 11 O O2A ATP . . . B 2 170.047 192.488 131.302 1 258.34 ? O2A ATP 1301 A 1 HETATM 12 O O3A ATP . . . B 2 171.358 192.141 129.161 1 263.12 ? O3A ATP 1301 A 1 HETATM 13 O O5' ATP . . . B 2 172.291 191.329 131.345 1 247.1 ? O5' ATP 1301 A 1 HETATM 14 C C5' ATP . . . B 2 173.239 192.394 131.425 1 240.21 ? C5' ATP 1301 A 1 HETATM 15 C C4' ATP . . . B 2 174.42 191.973 132.291 1 236.28 ? C4' ATP 1301 A 1 HETATM 16 O O4' ATP . . . B 2 173.977 191.78 133.636 1 231.95 ? O4' ATP 1301 A 1 HETATM 17 C C3' ATP . . . B 2 175.054 190.663 131.838 1 238.37 ? C3' ATP 1301 A 1 HETATM 18 O O3' ATP . . . B 2 176.478 190.805 131.776 1 250.67 ? O3' ATP 1301 A 1 HETATM 19 C C2' ATP . . . B 2 174.629 189.636 132.875 1 234.69 ? C2' ATP 1301 A 1 HETATM 20 O O2' ATP . . . B 2 175.658 188.685 133.176 1 239.78 ? O2' ATP 1301 A 1 HETATM 21 C C1' ATP . . . B 2 174.285 190.464 134.104 1 227.9 ? C1' ATP 1301 A 1 HETATM 22 N N9 ATP . . . B 2 173.129 189.93 134.869 1 218.08 ? N9 ATP 1301 A 1 HETATM 23 C C8 ATP . . . B 2 171.865 189.821 134.419 1 219.01 ? C8 ATP 1301 A 1 HETATM 24 N N7 ATP . . . B 2 171.055 189.306 135.375 1 218.15 ? N7 ATP 1301 A 1 HETATM 25 C C5 ATP . . . B 2 171.801 189.084 136.466 1 208.93 ? C5 ATP 1301 A 1 HETATM 26 C C6 ATP . . . B 2 171.561 188.556 137.83 1 206.92 ? C6 ATP 1301 A 1 HETATM 27 N N6 ATP . . . B 2 170.328 188.155 138.213 1 212.12 ? N6 ATP 1301 A 1 HETATM 28 N N1 ATP . . . B 2 172.613 188.49 138.676 1 203.16 ? N1 ATP 1301 A 1 HETATM 29 C C2 ATP . . . B 2 173.849 188.888 138.31 1 207.74 ? C2 ATP 1301 A 1 HETATM 30 N N3 ATP . . . B 2 174.131 189.377 137.081 1 209.15 ? N3 ATP 1301 A 1 HETATM 31 C C4 ATP . . . B 2 173.169 189.502 136.132 1 208.68 ? C4 ATP 1301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #