data_6C15 # _model_server_result.job_id bYG3PqQQjgqJE-5XGJKzKg _model_server_result.datetime_utc '2024-11-04 22:54:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6C15 # _exptl.entry_id 6C15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C15 _cell.length_a 84.255 _cell.length_b 84.255 _cell.length_c 366.833 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 105 A CYS 102 1_555 A SG CYS 170 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 210 A CYS 207 1_555 A SG CYS 265 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 28 B CYS 35 1_555 B SG CYS 83 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 23 A ASN 20 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 60 A ASN 57 1_555 D C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 131 A ASN 128 1_555 E C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A SG CYS 140 A CYS 137 1_555 J S2 BME . A BME 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A O GLU 156 A GLU 153 1_555 H NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 453 n n C1 O1 NAG sing 454 n n C1 O5 NAG sing 455 n n C1 H1 NAG sing 456 n n C2 C3 NAG sing 457 n n C2 N2 NAG sing 458 n n C2 H2 NAG sing 459 n n C3 C4 NAG sing 460 n n C3 O3 NAG sing 461 n n C3 H3 NAG sing 462 n n C4 C5 NAG sing 463 n n C4 O4 NAG sing 464 n n C4 H4 NAG sing 465 n n C5 C6 NAG sing 466 n n C5 O5 NAG sing 467 n n C5 H5 NAG sing 468 n n C6 O6 NAG sing 469 n n C6 H61 NAG sing 470 n n C6 H62 NAG sing 471 n n C7 C8 NAG sing 472 n n C7 N2 NAG sing 473 n n C7 O7 NAG doub 474 n n C8 H81 NAG sing 475 n n C8 H82 NAG sing 476 n n C8 H83 NAG sing 477 n n N2 HN2 NAG sing 478 n n O1 HO1 NAG sing 479 n n O3 HO3 NAG sing 480 n n O4 HO4 NAG sing 481 n n O6 HO6 NAG sing 482 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6C15 _atom_sites.fract_transf_matrix[1][1] 0.011869 _atom_sites.fract_transf_matrix[1][2] 0.006852 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 301 301 NAG NAG . D 3 NAG A 1 302 401 NAG NAG . E 3 NAG A 1 303 501 NAG NAG . F 4 D12 A 1 304 302 D12 D12 . G 5 6PL A 1 305 311 6PL 6PL . H 6 NA A 1 306 5 NA NA . I 7 SO4 A 1 307 11 SO4 SO4 . J 8 BME A 1 308 21 BME BME . K 9 EDO A 1 309 1000 EDO EDO . L 10 MES A 1 310 250 MES MES . M 11 HOH A 1 401 12 HOH HOH . M 11 HOH A 2 402 22 HOH HOH . M 11 HOH A 3 403 23 HOH HOH . M 11 HOH A 4 404 1 HOH HOH . M 11 HOH A 5 405 11 HOH HOH . M 11 HOH A 6 406 33 HOH HOH . M 11 HOH A 7 407 34 HOH HOH . N 11 HOH B 1 201 4 HOH HOH . N 11 HOH B 2 202 31 HOH HOH . N 11 HOH B 3 203 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -42.736 -0.543 27.809 1 100.17 ? C1 NAG 303 A 1 HETATM 2 C C2 NAG . . . E 3 -43.828 -1.598 28.007 1 99.1 ? C2 NAG 303 A 1 HETATM 3 C C3 NAG . . . E 3 -44.509 -1.239 29.333 1 104.73 ? C3 NAG 303 A 1 HETATM 4 C C4 NAG . . . E 3 -43.506 -1.273 30.487 1 107.66 ? C4 NAG 303 A 1 HETATM 5 C C5 NAG . . . E 3 -42.3 -0.381 30.177 1 105.73 ? C5 NAG 303 A 1 HETATM 6 C C6 NAG . . . E 3 -41.153 -0.559 31.147 1 106.84 ? C6 NAG 303 A 1 HETATM 7 C C7 NAG . . . E 3 -44.604 -2.194 25.742 1 84.2 ? C7 NAG 303 A 1 HETATM 8 C C8 NAG . . . E 3 -45.593 -1.871 24.664 1 82.57 ? C8 NAG 303 A 1 HETATM 9 N N2 NAG . . . E 3 -44.781 -1.556 26.906 1 91.15 ? N2 NAG 303 A 1 HETATM 10 O O3 NAG . . . E 3 -45.599 -2.115 29.616 1 105.6 ? O3 NAG 303 A 1 HETATM 11 O O4 NAG . . . E 3 -44.138 -0.883 31.709 1 110.28 ? O4 NAG 303 A 1 HETATM 12 O O5 NAG . . . E 3 -41.781 -0.685 28.868 1 103.17 ? O5 NAG 303 A 1 HETATM 13 O O6 NAG . . . E 3 -40.155 0.439 30.963 1 106.88 ? O6 NAG 303 A 1 HETATM 14 O O7 NAG . . . E 3 -43.674 -2.973 25.558 1 82.15 ? O7 NAG 303 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #