data_6C18
#
_model_server_result.job_id            c1mUlvGz7T-GrYZTb6wnvg 
_model_server_result.datetime_utc      '2024-10-11 01:30:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c18 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    6C18 
#
_exptl.entry_id    6C18 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              592.517 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-[(propan-2-yl)amino]-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.19 
_cell.angle_gamma         90 
_cell.entry_id            6C18 
_cell.length_a            208.962 
_cell.length_b            49.837 
_cell.length_c            65.085 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C18 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C27 H35 Cl2 N7 O4' 
_chem_comp.formula_weight    592.517 
_chem_comp.id                YY5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-[(propan-2-yl)amino]-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAH CAI YY5 sing 380 n n 
OAH CAE YY5 sing 381 n n 
CAE CAF YY5 doub 382 n y 
CAE CAD YY5 sing 383 n y 
CLL CAD YY5 sing 384 n n 
CAF CAA YY5 sing 385 n y 
CAD CAC YY5 doub 386 n y 
OBH CBG YY5 doub 387 n n 
CAA OAG YY5 sing 388 n n 
CAA CAB YY5 doub 389 n y 
OAW CAR YY5 doub 390 n n 
CAJ OAG YY5 sing 391 n n 
CAC CAB YY5 sing 392 n y 
CAC NAM YY5 sing 393 n n 
CBF NBE YY5 sing 394 n n 
CBF CBB YY5 sing 395 n n 
CBG NBE YY5 sing 396 n n 
CBG CBI YY5 sing 397 n n 
CAB CLK YY5 sing 398 n n 
NAM CAR YY5 sing 399 n n 
NAM CAN YY5 sing 400 n n 
NBE CBD YY5 sing 401 n n 
CAR NAQ YY5 sing 402 n n 
CBJ CBI YY5 doub 403 e n 
CBJ CBK YY5 sing 404 n n 
CBB NAQ YY5 sing 405 n n 
CBB CBC YY5 sing 406 n n 
CBK NBL YY5 sing 407 n n 
NAQ C4 YY5 sing 408 n n 
CBD CBC YY5 sing 409 n n 
CAN C5 YY5 sing 410 n n 
C4 C5 YY5 doub 411 n y 
C4 N3 YY5 sing 412 n y 
NBL CBM YY5 sing 413 n n 
NBL CBN YY5 sing 414 n n 
C5 C6 YY5 sing 415 n y 
CBA CAY YY5 sing 416 n n 
N3 C2 YY5 doub 417 n y 
C6 N1 YY5 doub 418 n y 
C2 N1 YY5 sing 419 n y 
C2 NAX YY5 sing 420 n n 
CAY NAX YY5 sing 421 n n 
CAY CAZ YY5 sing 422 n n 
CAI H1 YY5 sing 423 n n 
CAI H2 YY5 sing 424 n n 
CAI H3 YY5 sing 425 n n 
CAF H4 YY5 sing 426 n n 
CAJ H5 YY5 sing 427 n n 
CAJ H6 YY5 sing 428 n n 
CAJ H7 YY5 sing 429 n n 
CAN H8 YY5 sing 430 n n 
CAN H9 YY5 sing 431 n n 
C6 H10 YY5 sing 432 n n 
NAX H11 YY5 sing 433 n n 
CAY H12 YY5 sing 434 n n 
CBA H13 YY5 sing 435 n n 
CBA H14 YY5 sing 436 n n 
CBA H15 YY5 sing 437 n n 
CAZ H16 YY5 sing 438 n n 
CAZ H17 YY5 sing 439 n n 
CAZ H18 YY5 sing 440 n n 
CBB H19 YY5 sing 441 n n 
CBF H20 YY5 sing 442 n n 
CBF H21 YY5 sing 443 n n 
CBC H22 YY5 sing 444 n n 
CBC H23 YY5 sing 445 n n 
CBD H24 YY5 sing 446 n n 
CBD H25 YY5 sing 447 n n 
CBI H26 YY5 sing 448 n n 
CBJ H27 YY5 sing 449 n n 
CBK H28 YY5 sing 450 n n 
CBK H29 YY5 sing 451 n n 
CBN H31 YY5 sing 452 n n 
CBN H32 YY5 sing 453 n n 
CBN H33 YY5 sing 454 n n 
CBM H34 YY5 sing 455 n n 
CBM H35 YY5 sing 456 n n 
CBM H36 YY5 sing 457 n n 
#
_atom_sites.entry_id                     6C18 
_atom_sites.fract_transf_matrix[1][1]    0.004786 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001389 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020065 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015999 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YY5 A 1 801 801 YY5 YY5 . 
D 3 SO4 A 1 802 802 SO4 SO4 . 
E 2 YY5 B 1 801 801 YY5 YY5 . 
F 4 HOH A 1 901 901 HOH HOH . 
F 4 HOH A 2 902 902 HOH HOH . 
F 4 HOH A 3 903 903 HOH HOH . 
F 4 HOH A 4 904 904 HOH HOH . 
F 4 HOH A 5 905 905 HOH HOH . 
F 4 HOH A 6 906 906 HOH HOH . 
F 4 HOH A 7 907 907 HOH HOH . 
F 4 HOH A 8 908 908 HOH HOH . 
F 4 HOH A 9 909 909 HOH HOH . 
G 4 HOH B 1 901 901 HOH HOH . 
G 4 HOH B 2 902 902 HOH HOH . 
G 4 HOH B 3 903 903 HOH HOH . 
G 4 HOH B 4 904 904 HOH HOH . 
G 4 HOH B 5 905 905 HOH HOH . 
G 4 HOH B 6 906 906 HOH HOH . 
G 4 HOH B 7 907 907 HOH HOH . 
G 4 HOH B 8 908 908 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAI YY5 . . . C 2 -11.735 13.993 7.635 1 42.13 ? CAI YY5 801 A 1 
HETATM 2 O OAH YY5 . . . C 2 -12.287 12.687 7.513 1 41.56 ? OAH YY5 801 A 1 
HETATM 3 C CAE YY5 . . . C 2 -12.351 12.059 8.704 1 39.54 ? CAE YY5 801 A 1 
HETATM 4 C CAD YY5 . . . C 2 -13.545 12.139 9.374 1 40.66 ? CAD YY5 801 A 1 
HETATM 5 CL CLL YY5 . . . C 2 -14.92 12.968 8.849 1 41.55 ? CLL YY5 801 A 1 
HETATM 6 C CAF YY5 . . . C 2 -11.294 11.348 9.235 1 39.26 ? CAF YY5 801 A 1 
HETATM 7 C CAA YY5 . . . C 2 -11.468 10.732 10.46 1 39.53 ? CAA YY5 801 A 1 
HETATM 8 O OAG YY5 . . . C 2 -10.52 9.996 11.076 1 37.95 ? OAG YY5 801 A 1 
HETATM 9 C CAJ YY5 . . . C 2 -9.2 10.121 10.576 1 36.87 ? CAJ YY5 801 A 1 
HETATM 10 C CAB YY5 . . . C 2 -12.675 10.815 11.149 1 39.92 ? CAB YY5 801 A 1 
HETATM 11 CL CLK YY5 . . . C 2 -12.742 10.046 12.602 1 42.6 ? CLK YY5 801 A 1 
HETATM 12 C CAC YY5 . . . C 2 -13.72 11.531 10.576 1 38.2 ? CAC YY5 801 A 1 
HETATM 13 N NAM YY5 . . . C 2 -15.014 11.689 11.261 1 35.11 ? NAM YY5 801 A 1 
HETATM 14 C CAR YY5 . . . C 2 -15.864 10.642 11.288 1 32.49 ? CAR YY5 801 A 1 
HETATM 15 O OAW YY5 . . . C 2 -15.632 9.674 10.573 1 32.24 ? OAW YY5 801 A 1 
HETATM 16 C CAN YY5 . . . C 2 -14.866 12.483 12.483 1 32.73 ? CAN YY5 801 A 1 
HETATM 17 C C5 YY5 . . . C 2 -16.14 12.699 13.018 1 30.66 ? C5 YY5 801 A 1 
HETATM 18 C C6 YY5 . . . C 2 -16.347 13.86 13.735 1 28.64 ? C6 YY5 801 A 1 
HETATM 19 N N1 YY5 . . . C 2 -17.577 14.095 14.265 1 28.93 ? N1 YY5 801 A 1 
HETATM 20 C C2 YY5 . . . C 2 -18.56 13.19 14.089 1 29.86 ? C2 YY5 801 A 1 
HETATM 21 N NAX YY5 . . . C 2 -19.834 13.492 14.675 1 31.94 ? NAX YY5 801 A 1 
HETATM 22 C CAY YY5 . . . C 2 -20.835 12.436 14.48 1 35.56 ? CAY YY5 801 A 1 
HETATM 23 C CBA YY5 . . . C 2 -21.424 12.594 13.075 1 35.19 ? CBA YY5 801 A 1 
HETATM 24 C CAZ YY5 . . . C 2 -21.964 12.643 15.542 1 35.77 ? CAZ YY5 801 A 1 
HETATM 25 N N3 YY5 . . . C 2 -18.359 12.062 13.382 1 27.33 ? N3 YY5 801 A 1 
HETATM 26 C C4 YY5 . . . C 2 -17.188 11.799 12.801 1 29.83 ? C4 YY5 801 A 1 
HETATM 27 N NAQ YY5 . . . C 2 -16.963 10.645 12.088 1 33.18 ? NAQ YY5 801 A 1 
HETATM 28 C CBB YY5 . . . C 2 -18.133 9.826 11.572 1 34.56 ? CBB YY5 801 A 1 
HETATM 29 C CBF YY5 . . . C 2 -19.277 10.544 10.858 1 34.6 ? CBF YY5 801 A 1 
HETATM 30 C CBC YY5 . . . C 2 -18.768 9.207 12.772 1 34.97 ? CBC YY5 801 A 1 
HETATM 31 C CBD YY5 . . . C 2 -19.992 8.651 12.193 1 37.48 ? CBD YY5 801 A 1 
HETATM 32 N NBE YY5 . . . C 2 -20.476 9.733 11.275 1 37.48 ? NBE YY5 801 A 1 
HETATM 33 C CBG YY5 . . . C 2 -21.791 9.949 10.964 1 42.06 ? CBG YY5 801 A 1 
HETATM 34 O OBH YY5 . . . C 2 -22.159 10.869 10.24 1 37.56 ? OBH YY5 801 A 1 
HETATM 35 C CBI YY5 . . . C 2 -22.858 9.024 11.615 1 47.13 ? CBI YY5 801 A 1 
HETATM 36 C CBJ YY5 . . . C 2 -24.377 9.174 11.342 1 52.7 ? CBJ YY5 801 A 1 
HETATM 37 C CBK YY5 . . . C 2 -25.398 8.209 11.99 1 57.84 ? CBK YY5 801 A 1 
HETATM 38 N NBL YY5 . . . C 2 -26.259 9.024 12.93 1 62.2 ? NBL YY5 801 A 1 
HETATM 39 C CBN YY5 . . . C 2 -25.576 9.453 14.181 1 61.25 ? CBN YY5 801 A 1 
HETATM 40 C CBM YY5 . . . C 2 -27.55 8.357 13.256 1 59.88 ? CBM YY5 801 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           40 
#