data_6C19
#
_model_server_result.job_id            9Lvsjno3pFqLTEXPQTdSvQ 
_model_server_result.datetime_utc      '2024-11-14 19:00:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c19 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    6C19 
#
_exptl.entry_id    6C19 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              564.464 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-(methylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.97 
_cell.angle_gamma         90 
_cell.entry_id            6C19 
_cell.length_a            208.426 
_cell.length_b            49.013 
_cell.length_c            64.628 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C19 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C25 H31 Cl2 N7 O4' 
_chem_comp.formula_weight    564.464 
_chem_comp.id                YY7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-(methylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAJ OAH YY7 sing 380 n n 
OAH CAE YY7 sing 381 n n 
CAE CAF YY7 doub 382 n y 
CAE CAD YY7 sing 383 n y 
CLK CAD YY7 sing 384 n n 
CAF CAA YY7 sing 385 n y 
CAD CAC YY7 doub 386 n y 
OBC CBB YY7 doub 387 n n 
CAI OAG YY7 sing 388 n n 
OBL CAP YY7 doub 389 n n 
CAA OAG YY7 sing 390 n n 
CAA CAB YY7 doub 391 n y 
CAC CAB YY7 sing 392 n y 
CAC NAK YY7 sing 393 n n 
CBB NAZ YY7 sing 394 n n 
CBB CBD YY7 sing 395 n n 
CBA NAZ YY7 sing 396 n n 
CBA CAW YY7 sing 397 n n 
CBE CBD YY7 doub 398 e n 
CBE CBF YY7 sing 399 n n 
CAB CLJ YY7 sing 400 n n 
NAK CAP YY7 sing 401 n n 
NAK CAL YY7 sing 402 n n 
CAP NAO YY7 sing 403 n n 
NAZ CAY YY7 sing 404 n n 
CAW NAO YY7 sing 405 n n 
CAW CAX YY7 sing 406 n n 
CBF NBG YY7 sing 407 n n 
NAO C4 YY7 sing 408 n n 
CAY CAX YY7 sing 409 n n 
CAL C5 YY7 sing 410 n n 
NBG CBH YY7 sing 411 n n 
NBG CBI YY7 sing 412 n n 
C4 C5 YY7 doub 413 n y 
C4 N3 YY7 sing 414 n y 
C5 C6 YY7 sing 415 n y 
N3 C2 YY7 doub 416 n y 
C6 N1 YY7 doub 417 n y 
C2 N1 YY7 sing 418 n y 
C2 NAU YY7 sing 419 n n 
CAV NAU YY7 sing 420 n n 
CAI H1 YY7 sing 421 n n 
CAI H2 YY7 sing 422 n n 
CAI H3 YY7 sing 423 n n 
CAF H4 YY7 sing 424 n n 
CAJ H5 YY7 sing 425 n n 
CAJ H6 YY7 sing 426 n n 
CAJ H7 YY7 sing 427 n n 
CAL H8 YY7 sing 428 n n 
CAL H9 YY7 sing 429 n n 
C6 H10 YY7 sing 430 n n 
NAU H11 YY7 sing 431 n n 
CAV H12 YY7 sing 432 n n 
CAV H13 YY7 sing 433 n n 
CAV H14 YY7 sing 434 n n 
CAW H15 YY7 sing 435 n n 
CBA H16 YY7 sing 436 n n 
CBA H17 YY7 sing 437 n n 
CAX H18 YY7 sing 438 n n 
CAX H19 YY7 sing 439 n n 
CAY H20 YY7 sing 440 n n 
CAY H21 YY7 sing 441 n n 
CBD H22 YY7 sing 442 n n 
CBE H23 YY7 sing 443 n n 
CBF H24 YY7 sing 444 n n 
CBF H25 YY7 sing 445 n n 
CBI H27 YY7 sing 446 n n 
CBI H28 YY7 sing 447 n n 
CBI H29 YY7 sing 448 n n 
CBH H30 YY7 sing 449 n n 
CBH H31 YY7 sing 450 n n 
CBH H32 YY7 sing 451 n n 
#
_atom_sites.entry_id                     6C19 
_atom_sites.fract_transf_matrix[1][1]    0.004798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001373 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020403 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YY7 A 1 801 801 YY7 YY7 . 
D 3 SO4 A 1 802 802 SO4 SO4 . 
E 2 YY7 B 1 801 801 YY7 YY7 . 
F 4 HOH A 1 901 901 HOH HOH . 
F 4 HOH A 2 902 902 HOH HOH . 
F 4 HOH A 3 903 903 HOH HOH . 
F 4 HOH A 4 904 904 HOH HOH . 
F 4 HOH A 5 905 905 HOH HOH . 
F 4 HOH A 6 906 906 HOH HOH . 
F 4 HOH A 7 907 907 HOH HOH . 
F 4 HOH A 8 908 908 HOH HOH . 
F 4 HOH A 9 909 909 HOH HOH . 
F 4 HOH A 10 910 910 HOH HOH . 
F 4 HOH A 11 911 911 HOH HOH . 
F 4 HOH A 12 912 912 HOH HOH . 
F 4 HOH A 13 913 913 HOH HOH . 
F 4 HOH A 14 914 914 HOH HOH . 
F 4 HOH A 15 915 915 HOH HOH . 
F 4 HOH A 16 916 916 HOH HOH . 
F 4 HOH A 17 917 917 HOH HOH . 
F 4 HOH A 18 918 918 HOH HOH . 
F 4 HOH A 19 919 919 HOH HOH . 
F 4 HOH A 20 920 920 HOH HOH . 
F 4 HOH A 21 921 921 HOH HOH . 
F 4 HOH A 22 922 922 HOH HOH . 
F 4 HOH A 23 923 923 HOH HOH . 
F 4 HOH A 24 924 924 HOH HOH . 
F 4 HOH A 25 925 925 HOH HOH . 
F 4 HOH A 26 926 926 HOH HOH . 
F 4 HOH A 27 927 927 HOH HOH . 
F 4 HOH A 28 928 928 HOH HOH . 
F 4 HOH A 29 929 929 HOH HOH . 
F 4 HOH A 30 930 930 HOH HOH . 
F 4 HOH A 31 931 931 HOH HOH . 
F 4 HOH A 32 932 932 HOH HOH . 
F 4 HOH A 33 933 933 HOH HOH . 
F 4 HOH A 34 934 934 HOH HOH . 
F 4 HOH A 35 935 935 HOH HOH . 
F 4 HOH A 36 936 936 HOH HOH . 
F 4 HOH A 37 937 937 HOH HOH . 
F 4 HOH A 38 938 938 HOH HOH . 
F 4 HOH A 39 939 939 HOH HOH . 
F 4 HOH A 40 940 940 HOH HOH . 
F 4 HOH A 41 941 941 HOH HOH . 
F 4 HOH A 42 942 942 HOH HOH . 
F 4 HOH A 43 943 943 HOH HOH . 
F 4 HOH A 44 944 944 HOH HOH . 
F 4 HOH A 45 945 945 HOH HOH . 
F 4 HOH A 46 946 946 HOH HOH . 
F 4 HOH A 47 947 947 HOH HOH . 
F 4 HOH A 48 948 948 HOH HOH . 
F 4 HOH A 49 949 949 HOH HOH . 
F 4 HOH A 50 950 950 HOH HOH . 
F 4 HOH A 51 951 951 HOH HOH . 
F 4 HOH A 52 952 952 HOH HOH . 
F 4 HOH A 53 953 953 HOH HOH . 
F 4 HOH A 54 954 954 HOH HOH . 
F 4 HOH A 55 955 955 HOH HOH . 
F 4 HOH A 56 956 956 HOH HOH . 
F 4 HOH A 57 957 957 HOH HOH . 
F 4 HOH A 58 958 958 HOH HOH . 
F 4 HOH A 59 959 959 HOH HOH . 
F 4 HOH A 60 960 960 HOH HOH . 
F 4 HOH A 61 961 961 HOH HOH . 
G 4 HOH B 1 901 901 HOH HOH . 
G 4 HOH B 2 902 902 HOH HOH . 
G 4 HOH B 3 903 903 HOH HOH . 
G 4 HOH B 4 904 904 HOH HOH . 
G 4 HOH B 5 905 905 HOH HOH . 
G 4 HOH B 6 906 906 HOH HOH . 
G 4 HOH B 7 907 907 HOH HOH . 
G 4 HOH B 8 908 908 HOH HOH . 
G 4 HOH B 9 909 909 HOH HOH . 
G 4 HOH B 10 910 910 HOH HOH . 
G 4 HOH B 11 911 911 HOH HOH . 
G 4 HOH B 12 912 912 HOH HOH . 
G 4 HOH B 13 913 913 HOH HOH . 
G 4 HOH B 14 914 914 HOH HOH . 
G 4 HOH B 15 915 915 HOH HOH . 
G 4 HOH B 16 916 916 HOH HOH . 
G 4 HOH B 17 917 917 HOH HOH . 
G 4 HOH B 18 918 918 HOH HOH . 
G 4 HOH B 19 919 919 HOH HOH . 
G 4 HOH B 20 920 920 HOH HOH . 
G 4 HOH B 21 921 921 HOH HOH . 
G 4 HOH B 22 922 922 HOH HOH . 
G 4 HOH B 23 923 923 HOH HOH . 
G 4 HOH B 24 924 924 HOH HOH . 
G 4 HOH B 25 925 925 HOH HOH . 
G 4 HOH B 26 926 926 HOH HOH . 
G 4 HOH B 27 927 927 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAI YY7 . . . C 2 -9.452 -13.84 10.389 1 24.9 ? CAI YY7 801 A 1 
HETATM 2 O OAG YY7 . . . C 2 -10.705 -13.86 11.085 1 25.65 ? OAG YY7 801 A 1 
HETATM 3 C CAA YY7 . . . C 2 -11.673 -13.161 10.458 1 28.12 ? CAA YY7 801 A 1 
HETATM 4 C CAB YY7 . . . C 2 -12.895 -13.114 11.138 1 28.35 ? CAB YY7 801 A 1 
HETATM 5 CL CLJ YY7 . . . C 2 -12.976 -13.909 12.626 1 27.23 ? CLJ YY7 801 A 1 
HETATM 6 C CAF YY7 . . . C 2 -11.496 -12.541 9.211 1 28.24 ? CAF YY7 801 A 1 
HETATM 7 C CAE YY7 . . . C 2 -12.545 -11.841 8.66 1 27.31 ? CAE YY7 801 A 1 
HETATM 8 O OAH YY7 . . . C 2 -12.518 -11.13 7.507 1 29.91 ? OAH YY7 801 A 1 
HETATM 9 C CAJ YY7 . . . C 2 -11.443 -11.36 6.598 1 30.95 ? CAJ YY7 801 A 1 
HETATM 10 C CAD YY7 . . . C 2 -13.728 -11.792 9.338 1 28.59 ? CAD YY7 801 A 1 
HETATM 11 CL CLK YY7 . . . C 2 -15.072 -10.979 8.77 1 28.91 ? CLK YY7 801 A 1 
HETATM 12 C CAC YY7 . . . C 2 -13.932 -12.41 10.539 1 25.79 ? CAC YY7 801 A 1 
HETATM 13 N NAK YY7 . . . C 2 -15.216 -12.26 11.182 1 25.27 ? NAK YY7 801 A 1 
HETATM 14 C CAP YY7 . . . C 2 -16.115 -13.244 11.183 1 25.97 ? CAP YY7 801 A 1 
HETATM 15 O OBL YY7 . . . C 2 -15.954 -14.203 10.431 1 28.35 ? OBL YY7 801 A 1 
HETATM 16 C CAL YY7 . . . C 2 -15.102 -11.424 12.384 1 26.58 ? CAL YY7 801 A 1 
HETATM 17 C C5 YY7 . . . C 2 -16.357 -11.15 12.894 1 25.35 ? C5 YY7 801 A 1 
HETATM 18 C C6 YY7 . . . C 2 -16.551 -9.974 13.633 1 24.81 ? C6 YY7 801 A 1 
HETATM 19 N N1 YY7 . . . C 2 -17.802 -9.73 14.171 1 25.76 ? N1 YY7 801 A 1 
HETATM 20 C C2 YY7 . . . C 2 -18.804 -10.645 13.96 1 25.65 ? C2 YY7 801 A 1 
HETATM 21 N NAU YY7 . . . C 2 -20.074 -10.414 14.496 1 26.02 ? NAU YY7 801 A 1 
HETATM 22 C CAV YY7 . . . C 2 -21.128 -11.372 14.201 1 25.96 ? CAV YY7 801 A 1 
HETATM 23 N N3 YY7 . . . C 2 -18.572 -11.774 13.247 1 22.79 ? N3 YY7 801 A 1 
HETATM 24 C C4 YY7 . . . C 2 -17.399 -12.044 12.676 1 24.89 ? C4 YY7 801 A 1 
HETATM 25 N NAO YY7 . . . C 2 -17.197 -13.212 11.982 1 27.1 ? NAO YY7 801 A 1 
HETATM 26 C CAW YY7 . . . C 2 -18.394 -13.995 11.474 1 28.31 ? CAW YY7 801 A 1 
HETATM 27 C CBA YY7 . . . C 2 -19.548 -13.189 10.928 1 30.99 ? CBA YY7 801 A 1 
HETATM 28 C CAX YY7 . . . C 2 -18.956 -14.751 12.655 1 30.61 ? CAX YY7 801 A 1 
HETATM 29 C CAY YY7 . . . C 2 -20.378 -15.025 12.327 1 31.19 ? CAY YY7 801 A 1 
HETATM 30 N NAZ YY7 . . . C 2 -20.744 -14.003 11.331 1 33.96 ? NAZ YY7 801 A 1 
HETATM 31 C CBB YY7 . . . C 2 -22.012 -13.779 10.919 1 38.78 ? CBB YY7 801 A 1 
HETATM 32 O OBC YY7 . . . C 2 -22.319 -12.917 10.089 1 35.2 ? OBC YY7 801 A 1 
HETATM 33 C CBD YY7 . . . C 2 -23.067 -14.729 11.517 1 41.5 ? CBD YY7 801 A 1 
HETATM 34 C CBE YY7 . . . C 2 -24.535 -14.669 11.101 1 50.5 ? CBE YY7 801 A 1 
HETATM 35 C CBF YY7 . . . C 2 -25.549 -15.6 11.747 1 52.86 ? CBF YY7 801 A 1 
HETATM 36 N NBG YY7 . . . C 2 -26.347 -14.718 12.638 1 57.96 ? NBG YY7 801 A 1 
HETATM 37 C CBI YY7 . . . C 2 -25.559 -13.808 13.514 1 57.68 ? CBI YY7 801 A 1 
HETATM 38 C CBH YY7 . . . C 2 -27.283 -15.522 13.456 1 61.53 ? CBH YY7 801 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           445 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           38 
#