data_6C1B
#
_model_server_result.job_id            YuM3dP1UbEH8qS2H_tIwCg 
_model_server_result.datetime_utc      '2024-10-11 01:26:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c1b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    6C1B 
#
_exptl.entry_id    6C1B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              626.534 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.03 
_cell.angle_gamma         90 
_cell.entry_id            6C1B 
_cell.length_a            213.514 
_cell.length_b            52.193 
_cell.length_c            65.795 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C1B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C30 H33 Cl2 N7 O4' 
_chem_comp.formula_weight    626.534 
_chem_comp.id                YY4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBC OBA YY4 sing 376 n n 
OBA CAE YY4 sing 377 n n 
CAE CAF YY4 doub 378 n y 
CAE CAD YY4 sing 379 n y 
CLY CAD YY4 sing 380 n n 
CAF CAA YY4 sing 381 n y 
CAD CAC YY4 doub 382 n y 
OBK CBI YY4 doub 383 n n 
CBB OAZ YY4 sing 384 n n 
CAA OAZ YY4 sing 385 n n 
CAA CAB YY4 doub 386 n y 
OBQ CAL YY4 doub 387 n n 
CAC CAB YY4 sing 388 n y 
CAC NAG YY4 sing 389 n n 
CBL CBM YY4 sing 390 n n 
CBL CBJ YY4 doub 391 e n 
CBI CBJ YY4 sing 392 n n 
CBI NBG YY4 sing 393 n n 
CBH NBG YY4 sing 394 n n 
CBH CBD YY4 sing 395 n n 
CBM NBN YY4 sing 396 n n 
CAB CLX YY4 sing 397 n n 
NAG CAL YY4 sing 398 n n 
NAG CAH YY4 sing 399 n n 
NBG CBF YY4 sing 400 n n 
CAL NAK YY4 sing 401 n n 
CBD NAK YY4 sing 402 n n 
CBD CBE YY4 sing 403 n n 
NAK C4 YY4 sing 404 n n 
NBN CBO YY4 sing 405 n n 
NBN CBP YY4 sing 406 n n 
CBF CBE YY4 sing 407 n n 
CAH C5 YY4 sing 408 n n 
C4 C5 YY4 doub 409 n y 
C4 N3 YY4 sing 410 n y 
C5 C6 YY4 sing 411 n y 
N3 C2 YY4 doub 412 n y 
C6 N1 YY4 doub 413 n y 
C2 N1 YY4 sing 414 n y 
C2 NAQ YY4 sing 415 n n 
CAS CAT YY4 doub 416 n y 
CAS CAR YY4 sing 417 n y 
CAT CAU YY4 sing 418 n y 
NAQ CAR YY4 sing 419 n n 
CAR CAW YY4 doub 420 n y 
CAU CAV YY4 doub 421 n y 
CAW CAV YY4 sing 422 n y 
CBB H1 YY4 sing 423 n n 
CBB H2 YY4 sing 424 n n 
CBB H3 YY4 sing 425 n n 
CAF H4 YY4 sing 426 n n 
CBC H5 YY4 sing 427 n n 
CBC H6 YY4 sing 428 n n 
CBC H7 YY4 sing 429 n n 
CAH H8 YY4 sing 430 n n 
CAH H9 YY4 sing 431 n n 
C6 H10 YY4 sing 432 n n 
NAQ H11 YY4 sing 433 n n 
CAS H12 YY4 sing 434 n n 
CAT H13 YY4 sing 435 n n 
CAU H14 YY4 sing 436 n n 
CAV H15 YY4 sing 437 n n 
CAW H16 YY4 sing 438 n n 
CBD H17 YY4 sing 439 n n 
CBH H18 YY4 sing 440 n n 
CBH H19 YY4 sing 441 n n 
CBE H20 YY4 sing 442 n n 
CBE H21 YY4 sing 443 n n 
CBF H22 YY4 sing 444 n n 
CBF H23 YY4 sing 445 n n 
CBJ H24 YY4 sing 446 n n 
CBL H25 YY4 sing 447 n n 
CBM H26 YY4 sing 448 n n 
CBM H27 YY4 sing 449 n n 
CBP H29 YY4 sing 450 n n 
CBP H30 YY4 sing 451 n n 
CBP H31 YY4 sing 452 n n 
CBO H32 YY4 sing 453 n n 
CBO H33 YY4 sing 454 n n 
CBO H34 YY4 sing 455 n n 
#
_atom_sites.entry_id                     6C1B 
_atom_sites.fract_transf_matrix[1][1]    0.004684 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001434 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01916 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YY4 A 1 801 801 YY4 YY4 . 
D 2 YY4 B 1 801 801 YY4 YY4 . 
E 3 HOH A 1 901 901 HOH HOH . 
E 3 HOH A 2 902 902 HOH HOH . 
E 3 HOH A 3 903 903 HOH HOH . 
E 3 HOH A 4 904 904 HOH HOH . 
E 3 HOH A 5 905 905 HOH HOH . 
E 3 HOH A 6 906 906 HOH HOH . 
E 3 HOH A 7 907 907 HOH HOH . 
E 3 HOH A 8 908 908 HOH HOH . 
E 3 HOH A 9 909 909 HOH HOH . 
E 3 HOH A 10 910 910 HOH HOH . 
E 3 HOH A 11 911 911 HOH HOH . 
E 3 HOH A 12 912 912 HOH HOH . 
E 3 HOH A 13 913 913 HOH HOH . 
E 3 HOH A 14 914 914 HOH HOH . 
E 3 HOH A 15 915 915 HOH HOH . 
E 3 HOH A 16 916 916 HOH HOH . 
E 3 HOH A 17 917 917 HOH HOH . 
E 3 HOH A 18 918 918 HOH HOH . 
E 3 HOH A 19 919 919 HOH HOH . 
E 3 HOH A 20 920 920 HOH HOH . 
E 3 HOH A 21 921 921 HOH HOH . 
E 3 HOH A 22 922 922 HOH HOH . 
E 3 HOH A 23 923 923 HOH HOH . 
E 3 HOH A 24 924 924 HOH HOH . 
E 3 HOH A 25 925 925 HOH HOH . 
E 3 HOH A 26 926 926 HOH HOH . 
E 3 HOH A 27 927 927 HOH HOH . 
E 3 HOH A 28 928 928 HOH HOH . 
E 3 HOH A 29 929 929 HOH HOH . 
E 3 HOH A 30 930 930 HOH HOH . 
E 3 HOH A 31 931 931 HOH HOH . 
E 3 HOH A 32 932 932 HOH HOH . 
E 3 HOH A 33 933 933 HOH HOH . 
E 3 HOH A 34 934 934 HOH HOH . 
E 3 HOH A 35 935 935 HOH HOH . 
E 3 HOH A 36 936 936 HOH HOH . 
E 3 HOH A 37 937 937 HOH HOH . 
E 3 HOH A 38 938 938 HOH HOH . 
E 3 HOH A 39 939 939 HOH HOH . 
E 3 HOH A 40 940 940 HOH HOH . 
F 3 HOH B 1 901 901 HOH HOH . 
F 3 HOH B 2 902 902 HOH HOH . 
F 3 HOH B 3 903 903 HOH HOH . 
F 3 HOH B 4 904 904 HOH HOH . 
F 3 HOH B 5 905 905 HOH HOH . 
F 3 HOH B 6 906 906 HOH HOH . 
F 3 HOH B 7 907 907 HOH HOH . 
F 3 HOH B 8 908 908 HOH HOH . 
F 3 HOH B 9 909 909 HOH HOH . 
F 3 HOH B 10 910 910 HOH HOH . 
F 3 HOH B 11 911 911 HOH HOH . 
F 3 HOH B 12 912 912 HOH HOH . 
F 3 HOH B 13 913 913 HOH HOH . 
F 3 HOH B 14 914 914 HOH HOH . 
F 3 HOH B 15 915 915 HOH HOH . 
F 3 HOH B 16 916 916 HOH HOH . 
F 3 HOH B 17 917 917 HOH HOH . 
F 3 HOH B 18 918 918 HOH HOH . 
F 3 HOH B 19 919 919 HOH HOH . 
F 3 HOH B 20 920 920 HOH HOH . 
F 3 HOH B 21 921 921 HOH HOH . 
F 3 HOH B 22 922 922 HOH HOH . 
F 3 HOH B 23 923 923 HOH HOH . 
F 3 HOH B 24 924 924 HOH HOH . 
F 3 HOH B 25 925 925 HOH HOH . 
F 3 HOH B 26 926 926 HOH HOH . 
F 3 HOH B 27 927 927 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CBB YY4 . . . D 2 -40.404 35.44 32.299 1 35.31 ? CBB YY4 801 B 1 
HETATM 2 O OAZ YY4 . . . D 2 -41.49 36.226 32.753 1 36.41 ? OAZ YY4 801 B 1 
HETATM 3 C CAA YY4 . . . D 2 -42.256 36.908 31.857 1 41.97 ? CAA YY4 801 B 1 
HETATM 4 C CAB YY4 . . . D 2 -43.301 37.634 32.406 1 42.66 ? CAB YY4 801 B 1 
HETATM 5 CL CLX YY4 . . . D 2 -43.574 37.671 34.138 1 40.49 ? CLX YY4 801 B 1 
HETATM 6 C CAF YY4 . . . D 2 -42.037 36.882 30.46 1 42.66 ? CAF YY4 801 B 1 
HETATM 7 C CAE YY4 . . . D 2 -42.863 37.614 29.616 1 40.58 ? CAE YY4 801 B 1 
HETATM 8 O OBA YY4 . . . D 2 -42.712 37.691 28.276 1 43.17 ? OBA YY4 801 B 1 
HETATM 9 C CBC YY4 . . . D 2 -41.663 36.908 27.654 1 43.48 ? CBC YY4 801 B 1 
HETATM 10 C CAD YY4 . . . D 2 -43.904 38.332 30.16 1 41.63 ? CAD YY4 801 B 1 
HETATM 11 CL CLY YY4 . . . D 2 -45 39.245 29.253 1 38.56 ? CLY YY4 801 B 1 
HETATM 12 C CAC YY4 . . . D 2 -44.123 38.338 31.543 1 37.12 ? CAC YY4 801 B 1 
HETATM 13 N NAG YY4 . . . D 2 -45.218 39.195 31.887 1 33.07 ? NAG YY4 801 B 1 
HETATM 14 C CAL YY4 . . . D 2 -46.44 38.608 32.273 1 35.43 ? CAL YY4 801 B 1 
HETATM 15 O OBQ YY4 . . . D 2 -46.562 37.398 32.02 1 39.82 ? OBQ YY4 801 B 1 
HETATM 16 C CAH YY4 . . . D 2 -44.804 40.469 32.477 1 36.02 ? CAH YY4 801 B 1 
HETATM 17 C C5 YY4 . . . D 2 -45.88 41.217 32.877 1 35 ? C5 YY4 801 B 1 
HETATM 18 C C6 YY4 . . . D 2 -45.632 42.54 33.126 1 35.63 ? C6 YY4 801 B 1 
HETATM 19 N N1 YY4 . . . D 2 -46.675 43.345 33.542 1 37.05 ? N1 YY4 801 B 1 
HETATM 20 C C2 YY4 . . . D 2 -47.883 42.831 33.718 1 34.38 ? C2 YY4 801 B 1 
HETATM 21 N NAQ YY4 . . . D 2 -48.888 43.749 34.175 1 36.65 ? NAQ YY4 801 B 1 
HETATM 22 C CAR YY4 . . . D 2 -50.288 43.486 34.513 1 40.28 ? CAR YY4 801 B 1 
HETATM 23 C CAS YY4 . . . D 2 -51.053 44.554 34.991 1 44.34 ? CAS YY4 801 B 1 
HETATM 24 C CAT YY4 . . . D 2 -52.391 44.403 35.33 1 44.09 ? CAT YY4 801 B 1 
HETATM 25 C CAU YY4 . . . D 2 -52.977 43.165 35.168 1 45.63 ? CAU YY4 801 B 1 
HETATM 26 C CAV YY4 . . . D 2 -52.241 42.101 34.665 1 45.72 ? CAV YY4 801 B 1 
HETATM 27 C CAW YY4 . . . D 2 -50.89 42.249 34.344 1 45.05 ? CAW YY4 801 B 1 
HETATM 28 N N3 YY4 . . . D 2 -48.109 41.524 33.462 1 37.15 ? N3 YY4 801 B 1 
HETATM 29 C C4 YY4 . . . D 2 -47.158 40.701 33.012 1 34.23 ? C4 YY4 801 B 1 
HETATM 30 N NAK YY4 . . . D 2 -47.399 39.376 32.837 1 37.88 ? NAK YY4 801 B 1 
HETATM 31 C CBD YY4 . . . D 2 -48.766 38.901 32.541 1 44.35 ? CBD YY4 801 B 1 
HETATM 32 C CBH YY4 . . . D 2 -49.668 39.868 31.789 1 47.11 ? CBH YY4 801 B 1 
HETATM 33 C CBE YY4 . . . D 2 -49.407 38.657 33.906 1 48.06 ? CBE YY4 801 B 1 
HETATM 34 C CBF YY4 . . . D 2 -50.889 38.656 33.555 1 49.98 ? CBF YY4 801 B 1 
HETATM 35 N NBG YY4 . . . D 2 -51.003 39.435 32.259 1 50.31 ? NBG YY4 801 B 1 
HETATM 36 C CBI YY4 . . . D 2 -52.142 39.777 31.627 1 56.84 ? CBI YY4 801 B 1 
HETATM 37 O OBK YY4 . . . D 2 -52.187 40.458 30.594 1 52.75 ? OBK YY4 801 B 1 
HETATM 38 C CBJ YY4 . . . D 2 -53.413 39.238 32.299 1 56.29 ? CBJ YY4 801 B 1 
HETATM 39 C CBL YY4 . . . D 2 -54.791 39.524 31.731 1 61.73 ? CBL YY4 801 B 1 
HETATM 40 C CBM YY4 . . . D 2 -55.994 39.012 32.464 1 63.49 ? CBM YY4 801 B 1 
HETATM 41 N NBN YY4 . . . D 2 -56.822 40.228 32.719 1 69.2 ? NBN YY4 801 B 1 
HETATM 42 C CBP YY4 . . . D 2 -56.124 41.317 33.461 1 64.78 ? CBP YY4 801 B 1 
HETATM 43 C CBO YY4 . . . D 2 -58.12 39.857 33.374 1 65.38 ? CBO YY4 801 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           43 
#