data_6C1C
#
_model_server_result.job_id            AXKV4QKIGrMV9ZoCSbc_3g 
_model_server_result.datetime_utc      '2024-10-11 01:20:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c1c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    6C1C 
#
_exptl.entry_id    6C1C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              632.581 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-(cyclohexylamino)-3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.08 
_cell.angle_gamma         90 
_cell.entry_id            6C1C 
_cell.length_a            213.293 
_cell.length_b            52.035 
_cell.length_c            66.045 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C1C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C30 H39 Cl2 N7 O4' 
_chem_comp.formula_weight    632.581 
_chem_comp.id                YY6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-(cyclohexylamino)-3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAV OAT YY6 sing 380 n n 
OAT CAP YY6 sing 381 n n 
CAP CAO YY6 doub 382 n y 
CAP CAQ YY6 sing 383 n y 
CLR CAQ YY6 sing 384 n n 
CAO CAN YY6 sing 385 n y 
CAQ CAL YY6 doub 386 n y 
OBK CBJ YY6 doub 387 n n 
CAW OAU YY6 sing 388 n n 
CBM CBN YY6 sing 389 n n 
CBM CBL YY6 doub 390 e n 
CAN OAU YY6 sing 391 n n 
CAN CAM YY6 doub 392 n y 
OAK CAH YY6 doub 393 n n 
CBJ CBL YY6 sing 394 n n 
CBJ NBA YY6 sing 395 n n 
CAL CAM YY6 sing 396 n y 
CAL NAI YY6 sing 397 n n 
CBB NBA YY6 sing 398 n n 
CBB CAX YY6 sing 399 n n 
CBN NBO YY6 sing 400 n n 
NBA CAZ YY6 sing 401 n n 
CAM CLS YY6 sing 402 n n 
CAH NAI YY6 sing 403 n n 
CAH NAG YY6 sing 404 n n 
NAI CAJ YY6 sing 405 n n 
CBP NBO YY6 sing 406 n n 
CAX NAG YY6 sing 407 n n 
CAX CAY YY6 sing 408 n n 
NBO CBQ YY6 sing 409 n n 
NAG C4 YY6 sing 410 n n 
CAZ CAY YY6 sing 411 n n 
CAJ C5 YY6 sing 412 n n 
C4 C5 YY6 doub 413 n y 
C4 N3 YY6 sing 414 n y 
C5 C6 YY6 sing 415 n y 
N3 C2 YY6 doub 416 n y 
CBF CBE YY6 sing 417 n n 
CBF CBG YY6 sing 418 n n 
CBE CBD YY6 sing 419 n n 
C6 N1 YY6 doub 420 n y 
C2 N1 YY6 sing 421 n y 
C2 NBC YY6 sing 422 n n 
CBG CBH YY6 sing 423 n n 
CBD NBC YY6 sing 424 n n 
CBD CBI YY6 sing 425 n n 
CBH CBI YY6 sing 426 n n 
CAV H1 YY6 sing 427 n n 
CAV H2 YY6 sing 428 n n 
CAV H3 YY6 sing 429 n n 
CAO H4 YY6 sing 430 n n 
CAW H5 YY6 sing 431 n n 
CAW H6 YY6 sing 432 n n 
CAW H7 YY6 sing 433 n n 
CAJ H8 YY6 sing 434 n n 
CAJ H9 YY6 sing 435 n n 
C6 H10 YY6 sing 436 n n 
NBC H11 YY6 sing 437 n n 
CBD H12 YY6 sing 438 n n 
CBE H13 YY6 sing 439 n n 
CBE H14 YY6 sing 440 n n 
CBF H15 YY6 sing 441 n n 
CBF H16 YY6 sing 442 n n 
CBG H17 YY6 sing 443 n n 
CBG H18 YY6 sing 444 n n 
CBH H19 YY6 sing 445 n n 
CBH H20 YY6 sing 446 n n 
CBI H21 YY6 sing 447 n n 
CBI H22 YY6 sing 448 n n 
CAX H23 YY6 sing 449 n n 
CBB H24 YY6 sing 450 n n 
CBB H25 YY6 sing 451 n n 
CAY H26 YY6 sing 452 n n 
CAY H27 YY6 sing 453 n n 
CAZ H28 YY6 sing 454 n n 
CAZ H29 YY6 sing 455 n n 
CBL H30 YY6 sing 456 n n 
CBM H31 YY6 sing 457 n n 
CBN H32 YY6 sing 458 n n 
CBN H33 YY6 sing 459 n n 
CBQ H35 YY6 sing 460 n n 
CBQ H36 YY6 sing 461 n n 
CBQ H37 YY6 sing 462 n n 
CBP H38 YY6 sing 463 n n 
CBP H39 YY6 sing 464 n n 
CBP H40 YY6 sing 465 n n 
#
_atom_sites.entry_id                     6C1C 
_atom_sites.fract_transf_matrix[1][1]    0.004688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00144 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019218 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YY6 A 1 801 801 YY6 YY6 . 
D 2 YY6 B 1 801 801 YY6 YY6 . 
E 3 SO4 B 1 802 802 SO4 SO4 . 
F 4 HOH A 1 901 901 HOH HOH . 
F 4 HOH A 2 902 902 HOH HOH . 
F 4 HOH A 3 903 903 HOH HOH . 
F 4 HOH A 4 904 904 HOH HOH . 
F 4 HOH A 5 905 905 HOH HOH . 
F 4 HOH A 6 906 906 HOH HOH . 
F 4 HOH A 7 907 907 HOH HOH . 
F 4 HOH A 8 908 908 HOH HOH . 
F 4 HOH A 9 909 909 HOH HOH . 
F 4 HOH A 10 910 910 HOH HOH . 
F 4 HOH A 11 911 911 HOH HOH . 
F 4 HOH A 12 912 912 HOH HOH . 
F 4 HOH A 13 913 913 HOH HOH . 
F 4 HOH A 14 914 914 HOH HOH . 
F 4 HOH A 15 915 915 HOH HOH . 
F 4 HOH A 16 916 916 HOH HOH . 
F 4 HOH A 17 917 917 HOH HOH . 
F 4 HOH A 18 918 918 HOH HOH . 
F 4 HOH A 19 919 919 HOH HOH . 
F 4 HOH A 20 920 920 HOH HOH . 
F 4 HOH A 21 921 921 HOH HOH . 
F 4 HOH A 22 922 922 HOH HOH . 
F 4 HOH A 23 923 923 HOH HOH . 
F 4 HOH A 24 924 924 HOH HOH . 
F 4 HOH A 25 925 925 HOH HOH . 
F 4 HOH A 26 926 926 HOH HOH . 
F 4 HOH A 27 927 927 HOH HOH . 
F 4 HOH A 28 928 928 HOH HOH . 
F 4 HOH A 29 929 929 HOH HOH . 
F 4 HOH A 30 930 930 HOH HOH . 
F 4 HOH A 31 931 931 HOH HOH . 
F 4 HOH A 32 932 932 HOH HOH . 
G 4 HOH B 1 901 901 HOH HOH . 
G 4 HOH B 2 902 902 HOH HOH . 
G 4 HOH B 3 903 903 HOH HOH . 
G 4 HOH B 4 904 904 HOH HOH . 
G 4 HOH B 5 905 905 HOH HOH . 
G 4 HOH B 6 906 906 HOH HOH . 
G 4 HOH B 7 907 907 HOH HOH . 
G 4 HOH B 8 908 908 HOH HOH . 
G 4 HOH B 9 909 909 HOH HOH . 
G 4 HOH B 10 910 910 HOH HOH . 
G 4 HOH B 11 911 911 HOH HOH . 
G 4 HOH B 12 912 912 HOH HOH . 
G 4 HOH B 13 913 913 HOH HOH . 
G 4 HOH B 14 914 914 HOH HOH . 
G 4 HOH B 15 915 915 HOH HOH . 
G 4 HOH B 16 916 916 HOH HOH . 
G 4 HOH B 17 917 917 HOH HOH . 
G 4 HOH B 18 918 918 HOH HOH . 
G 4 HOH B 19 919 919 HOH HOH . 
G 4 HOH B 20 920 920 HOH HOH . 
G 4 HOH B 21 921 921 HOH HOH . 
G 4 HOH B 22 922 922 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAV YY6 . . . D 2 -41.538 37.296 27.894 1 36.01 ? CAV YY6 801 B 1 
HETATM 2 O OAT YY6 . . . D 2 -42.821 37.612 28.448 1 36.66 ? OAT YY6 801 B 1 
HETATM 3 C CAP YY6 . . . D 2 -42.956 37.554 29.807 1 35.47 ? CAP YY6 801 B 1 
HETATM 4 C CAQ YY6 . . . D 2 -44.031 38.249 30.332 1 36.38 ? CAQ YY6 801 B 1 
HETATM 5 CL CLR YY6 . . . D 2 -45.102 39.116 29.362 1 37.03 ? CLR YY6 801 B 1 
HETATM 6 C CAO YY6 . . . D 2 -42.091 36.872 30.651 1 35.26 ? CAO YY6 801 B 1 
HETATM 7 C CAN YY6 . . . D 2 -42.316 36.882 32.03 1 36.62 ? CAN YY6 801 B 1 
HETATM 8 O OAU YY6 . . . D 2 -41.504 36.252 32.952 1 34.97 ? OAU YY6 801 B 1 
HETATM 9 C CAW YY6 . . . D 2 -40.452 35.405 32.453 1 34 ? CAW YY6 801 B 1 
HETATM 10 C CAM YY6 . . . D 2 -43.405 37.58 32.561 1 37.52 ? CAM YY6 801 B 1 
HETATM 11 CL CLS YY6 . . . D 2 -43.658 37.582 34.246 1 37.56 ? CLS YY6 801 B 1 
HETATM 12 C CAL YY6 . . . D 2 -44.265 38.255 31.697 1 37.06 ? CAL YY6 801 B 1 
HETATM 13 N NAI YY6 . . . D 2 -45.402 39.025 32.131 1 36.78 ? NAI YY6 801 B 1 
HETATM 14 C CAH YY6 . . . D 2 -46.589 38.469 32.403 1 39.12 ? CAH YY6 801 B 1 
HETATM 15 O OAK YY6 . . . D 2 -46.731 37.268 32.156 1 39.04 ? OAK YY6 801 B 1 
HETATM 16 C CAJ YY6 . . . D 2 -45.076 40.391 32.586 1 37.73 ? CAJ YY6 801 B 1 
HETATM 17 C C5 YY6 . . . D 2 -46.176 41.097 33.054 1 36.42 ? C5 YY6 801 B 1 
HETATM 18 C C6 YY6 . . . D 2 -45.982 42.445 33.334 1 36.77 ? C6 YY6 801 B 1 
HETATM 19 N N1 YY6 . . . D 2 -47.021 43.212 33.808 1 35.53 ? N1 YY6 801 B 1 
HETATM 20 C C2 YY6 . . . D 2 -48.217 42.649 33.993 1 37.57 ? C2 YY6 801 B 1 
HETATM 21 N NBC YY6 . . . D 2 -49.287 43.501 34.493 1 38.4 ? NBC YY6 801 B 1 
HETATM 22 C CBD YY6 . . . D 2 -50.618 42.894 34.663 1 42.32 ? CBD YY6 801 B 1 
HETATM 23 C CBE YY6 . . . D 2 -51.367 43.055 33.439 1 44.74 ? CBE YY6 801 B 1 
HETATM 24 C CBF YY6 . . . D 2 -52.643 42.229 33.59 1 45.55 ? CBF YY6 801 B 1 
HETATM 25 C CBG YY6 . . . D 2 -53.535 43.045 34.561 1 45 ? CBG YY6 801 B 1 
HETATM 26 C CBH YY6 . . . D 2 -52.823 43.25 35.891 1 44.09 ? CBH YY6 801 B 1 
HETATM 27 C CBI YY6 . . . D 2 -51.38 43.736 35.702 1 45.12 ? CBI YY6 801 B 1 
HETATM 28 N N3 YY6 . . . D 2 -48.4 41.322 33.728 1 36.16 ? N3 YY6 801 B 1 
HETATM 29 C C4 YY6 . . . D 2 -47.423 40.517 33.238 1 36.37 ? C4 YY6 801 B 1 
HETATM 30 N NAG YY6 . . . D 2 -47.608 39.171 33.012 1 39.82 ? NAG YY6 801 B 1 
HETATM 31 C CAX YY6 . . . D 2 -48.944 38.67 32.597 1 40.1 ? CAX YY6 801 B 1 
HETATM 32 C CBB YY6 . . . D 2 -49.779 39.614 31.808 1 42.22 ? CBB YY6 801 B 1 
HETATM 33 C CAY YY6 . . . D 2 -49.708 38.405 33.883 1 43.11 ? CAY YY6 801 B 1 
HETATM 34 C CAZ YY6 . . . D 2 -51.153 38.487 33.497 1 44.3 ? CAZ YY6 801 B 1 
HETATM 35 N NBA YY6 . . . D 2 -51.168 39.202 32.192 1 44.12 ? NBA YY6 801 B 1 
HETATM 36 C CBJ YY6 . . . D 2 -52.277 39.525 31.511 1 46.47 ? CBJ YY6 801 B 1 
HETATM 37 O OBK YY6 . . . D 2 -52.251 40.143 30.447 1 46.63 ? OBK YY6 801 B 1 
HETATM 38 C CBL YY6 . . . D 2 -53.605 39.022 32.127 1 47.25 ? CBL YY6 801 B 1 
HETATM 39 C CBM YY6 . . . D 2 -54.959 39.334 31.479 1 49.49 ? CBM YY6 801 B 1 
HETATM 40 C CBN YY6 . . . D 2 -56.222 38.823 32.135 1 52.09 ? CBN YY6 801 B 1 
HETATM 41 N NBO YY6 . . . D 2 -57.001 40.015 32.596 1 54.2 ? NBO YY6 801 B 1 
HETATM 42 C CBQ YY6 . . . D 2 -56.283 40.874 33.567 1 51.4 ? CBQ YY6 801 B 1 
HETATM 43 C CBP YY6 . . . D 2 -58.322 39.58 33.141 1 51.4 ? CBP YY6 801 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#