data_6C1J # _model_server_result.job_id N6jW7jtrNPtN6hzUAW66-g _model_server_result.datetime_utc '2025-07-06 21:00:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6C1J # _exptl.entry_id 6C1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.106 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,4-dinitrophenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C1J _cell.length_a 35.902 _cell.length_b 94.998 _cell.length_c 72.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 18 A GLU 18 1_555 C MG MG . A MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc2 A OD2 ASP 21 A ASP 21 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 B MG MG . A MG 201 1_555 F O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 B MG MG . A MG 201 1_555 F O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 B MG MG . A MG 201 1_555 F O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 B MG MG . A MG 201 1_555 F O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc7 B MG MG . A MG 201 1_555 F O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc8 B MG MG . A MG 201 1_555 F O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc9 C MG MG . A MG 202 1_555 F O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc10 C MG MG . A MG 202 1_555 F O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc11 C MG MG . A MG 202 1_555 F O HOH . A HOH 363 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 C MG MG . A MG 202 1_555 F O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? # _chem_comp.formula 'C6 H4 N2 O5' _chem_comp.formula_weight 184.106 _chem_comp.id DNX _chem_comp.mon_nstd_flag . _chem_comp.name 3,4-dinitrophenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DNX doub 83 n y C1 C6 DNX sing 84 n y C1 O1 DNX sing 85 n n C2 C3 DNX sing 86 n y C3 N3 DNX sing 87 n n C3 C4 DNX doub 88 n y N3 O31 DNX doub 89 n n N3 O32 DNX sing 90 n n C4 N4 DNX sing 91 n n C4 C5 DNX sing 92 n y N4 O41 DNX doub 93 n n N4 O42 DNX sing 94 n n C5 C6 DNX doub 95 n y C2 H2 DNX sing 96 n n C5 H5 DNX sing 97 n n C6 H6 DNX sing 98 n n O1 HO1 DNX sing 99 n n # _atom_sites.entry_id 6C1J _atom_sites.fract_transf_matrix[1][1] 0.027854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 1 MG MG . C 2 MG A 1 202 2 MG MG . D 3 CL A 1 203 1 CL CL . E 4 DNX A 1 204 1 DNX LIG . F 5 HOH A 1 301 61 HOH HOH . F 5 HOH A 2 302 86 HOH HOH . F 5 HOH A 3 303 139 HOH HOH . F 5 HOH A 4 304 207 HOH HOH . F 5 HOH A 5 305 113 HOH HOH . F 5 HOH A 6 306 67 HOH HOH . F 5 HOH A 7 307 85 HOH HOH . F 5 HOH A 8 308 49 HOH HOH . F 5 HOH A 9 309 18 HOH HOH . F 5 HOH A 10 310 140 HOH HOH . F 5 HOH A 11 311 25 HOH HOH . F 5 HOH A 12 312 51 HOH HOH . F 5 HOH A 13 313 64 HOH HOH . F 5 HOH A 14 314 158 HOH HOH . F 5 HOH A 15 315 110 HOH HOH . F 5 HOH A 16 316 82 HOH HOH . F 5 HOH A 17 317 12 HOH HOH . F 5 HOH A 18 318 17 HOH HOH . F 5 HOH A 19 319 14 HOH HOH . F 5 HOH A 20 320 6 HOH HOH . F 5 HOH A 21 321 160 HOH HOH . F 5 HOH A 22 322 56 HOH HOH . F 5 HOH A 23 323 39 HOH HOH . F 5 HOH A 24 324 75 HOH HOH . F 5 HOH A 25 325 50 HOH HOH . F 5 HOH A 26 326 234 HOH HOH . F 5 HOH A 27 327 24 HOH HOH . F 5 HOH A 28 328 209 HOH HOH . F 5 HOH A 29 329 2 HOH HOH . F 5 HOH A 30 330 36 HOH HOH . F 5 HOH A 31 331 5 HOH HOH . F 5 HOH A 32 332 37 HOH HOH . F 5 HOH A 33 333 20 HOH HOH . F 5 HOH A 34 334 77 HOH HOH . F 5 HOH A 35 335 143 HOH HOH . F 5 HOH A 36 336 53 HOH HOH . F 5 HOH A 37 337 127 HOH HOH . F 5 HOH A 38 338 21 HOH HOH . F 5 HOH A 39 339 137 HOH HOH . F 5 HOH A 40 340 33 HOH HOH . F 5 HOH A 41 341 9 HOH HOH . F 5 HOH A 42 342 58 HOH HOH . F 5 HOH A 43 343 41 HOH HOH . F 5 HOH A 44 344 66 HOH HOH . F 5 HOH A 45 345 57 HOH HOH . F 5 HOH A 46 346 128 HOH HOH . F 5 HOH A 47 347 19 HOH HOH . F 5 HOH A 48 348 116 HOH HOH . F 5 HOH A 49 349 42 HOH HOH . F 5 HOH A 50 350 60 HOH HOH . F 5 HOH A 51 351 7 HOH HOH . F 5 HOH A 52 352 91 HOH HOH . F 5 HOH A 53 353 215 HOH HOH . F 5 HOH A 54 354 16 HOH HOH . F 5 HOH A 55 355 94 HOH HOH . F 5 HOH A 56 356 13 HOH HOH . F 5 HOH A 57 357 101 HOH HOH . F 5 HOH A 58 358 11 HOH HOH . F 5 HOH A 59 359 26 HOH HOH . F 5 HOH A 60 360 23 HOH HOH . F 5 HOH A 61 361 220 HOH HOH . F 5 HOH A 62 362 176 HOH HOH . F 5 HOH A 63 363 196 HOH HOH . F 5 HOH A 64 364 44 HOH HOH . F 5 HOH A 65 365 59 HOH HOH . F 5 HOH A 66 366 30 HOH HOH . F 5 HOH A 67 367 206 HOH HOH . F 5 HOH A 68 368 119 HOH HOH . F 5 HOH A 69 369 198 HOH HOH . F 5 HOH A 70 370 229 HOH HOH . F 5 HOH A 71 371 83 HOH HOH . F 5 HOH A 72 372 35 HOH HOH . F 5 HOH A 73 373 34 HOH HOH . F 5 HOH A 74 374 69 HOH HOH . F 5 HOH A 75 375 165 HOH HOH . F 5 HOH A 76 376 104 HOH HOH . F 5 HOH A 77 377 29 HOH HOH . F 5 HOH A 78 378 136 HOH HOH . F 5 HOH A 79 379 28 HOH HOH . F 5 HOH A 80 380 177 HOH HOH . F 5 HOH A 81 381 238 HOH HOH . F 5 HOH A 82 382 45 HOH HOH . F 5 HOH A 83 383 132 HOH HOH . F 5 HOH A 84 384 175 HOH HOH . F 5 HOH A 85 385 106 HOH HOH . F 5 HOH A 86 386 65 HOH HOH . F 5 HOH A 87 387 201 HOH HOH . F 5 HOH A 88 388 93 HOH HOH . F 5 HOH A 89 389 145 HOH HOH . F 5 HOH A 90 390 52 HOH HOH . F 5 HOH A 91 391 213 HOH HOH . F 5 HOH A 92 392 68 HOH HOH . F 5 HOH A 93 393 205 HOH HOH . F 5 HOH A 94 394 43 HOH HOH . F 5 HOH A 95 395 98 HOH HOH . F 5 HOH A 96 396 118 HOH HOH . F 5 HOH A 97 397 216 HOH HOH . F 5 HOH A 98 398 239 HOH HOH . F 5 HOH A 99 399 240 HOH HOH . F 5 HOH A 100 400 90 HOH HOH . F 5 HOH A 101 401 73 HOH HOH . F 5 HOH A 102 402 92 HOH HOH . F 5 HOH A 103 403 155 HOH HOH . F 5 HOH A 104 404 63 HOH HOH . F 5 HOH A 105 405 124 HOH HOH . F 5 HOH A 106 406 144 HOH HOH . F 5 HOH A 107 407 153 HOH HOH . F 5 HOH A 108 408 95 HOH HOH . F 5 HOH A 109 409 131 HOH HOH . F 5 HOH A 110 410 222 HOH HOH . F 5 HOH A 111 411 126 HOH HOH . F 5 HOH A 112 412 150 HOH HOH . F 5 HOH A 113 413 108 HOH HOH . F 5 HOH A 114 414 31 HOH HOH . F 5 HOH A 115 415 72 HOH HOH . F 5 HOH A 116 416 22 HOH HOH . F 5 HOH A 117 417 187 HOH HOH . F 5 HOH A 118 418 172 HOH HOH . F 5 HOH A 119 419 138 HOH HOH . F 5 HOH A 120 420 236 HOH HOH . F 5 HOH A 121 421 159 HOH HOH . F 5 HOH A 122 422 121 HOH HOH . F 5 HOH A 123 423 129 HOH HOH . F 5 HOH A 124 424 200 HOH HOH . F 5 HOH A 125 425 81 HOH HOH . F 5 HOH A 126 426 46 HOH HOH . F 5 HOH A 127 427 243 HOH HOH . F 5 HOH A 128 428 32 HOH HOH . F 5 HOH A 129 429 218 HOH HOH . F 5 HOH A 130 430 157 HOH HOH . F 5 HOH A 131 431 97 HOH HOH . F 5 HOH A 132 432 194 HOH HOH . F 5 HOH A 133 433 141 HOH HOH . F 5 HOH A 134 434 99 HOH HOH . F 5 HOH A 135 435 87 HOH HOH . F 5 HOH A 136 436 242 HOH HOH . F 5 HOH A 137 437 214 HOH HOH . F 5 HOH A 138 438 178 HOH HOH . F 5 HOH A 139 439 169 HOH HOH . F 5 HOH A 140 440 47 HOH HOH . F 5 HOH A 141 441 152 HOH HOH . F 5 HOH A 142 442 235 HOH HOH . F 5 HOH A 143 443 197 HOH HOH . F 5 HOH A 144 444 88 HOH HOH . F 5 HOH A 145 445 228 HOH HOH . F 5 HOH A 146 446 223 HOH HOH . F 5 HOH A 147 447 210 HOH HOH . F 5 HOH A 148 448 74 HOH HOH . F 5 HOH A 149 449 237 HOH HOH . F 5 HOH A 150 450 117 HOH HOH . F 5 HOH A 151 451 123 HOH HOH . F 5 HOH A 152 452 105 HOH HOH . F 5 HOH A 153 453 84 HOH HOH . F 5 HOH A 154 454 219 HOH HOH . F 5 HOH A 155 455 162 HOH HOH . F 5 HOH A 156 456 232 HOH HOH . F 5 HOH A 157 457 241 HOH HOH . F 5 HOH A 158 458 204 HOH HOH . F 5 HOH A 159 459 151 HOH HOH . F 5 HOH A 160 460 79 HOH HOH . F 5 HOH A 161 461 233 HOH HOH . F 5 HOH A 162 462 70 HOH HOH . F 5 HOH A 163 463 111 HOH HOH . F 5 HOH A 164 464 71 HOH HOH . F 5 HOH A 165 465 186 HOH HOH . F 5 HOH A 166 466 221 HOH HOH . F 5 HOH A 167 467 161 HOH HOH . F 5 HOH A 168 468 154 HOH HOH . F 5 HOH A 169 469 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DNX . A . E 4 -13.722 -11.487 4.279 0.6 10.24 ? C1 DNX 204 A 1 HETATM 2 C C1 DNX . B . E 4 -13.636 -11.398 4.176 0.4 14.75 ? C1 DNX 204 A 1 HETATM 3 C C2 DNX . A . E 4 -14.289 -12.694 4.724 0.6 12.74 ? C2 DNX 204 A 1 HETATM 4 C C2 DNX . B . E 4 -14.253 -12.6 4.499 0.4 16.47 ? C2 DNX 204 A 1 HETATM 5 C C3 DNX . A . E 4 -14.385 -12.878 6.085 0.6 16.71 ? C3 DNX 204 A 1 HETATM 6 C C3 DNX . B . E 4 -14.687 -12.776 5.79 0.4 18.84 ? C3 DNX 204 A 1 HETATM 7 N N3 DNX . A . E 4 -14.998 -14.154 6.57 0.6 20.19 1 N3 DNX 204 A 1 HETATM 8 N N3 DNX . B . E 4 -15.374 -14.101 6.093 0.4 20.27 1 N3 DNX 204 A 1 HETATM 9 C C4 DNX . A . E 4 -13.935 -11.902 6.975 0.6 18.44 ? C4 DNX 204 A 1 HETATM 10 C C4 DNX . B . E 4 -14.536 -11.759 6.767 0.4 20.07 ? C4 DNX 204 A 1 HETATM 11 N N4 DNX . A . E 4 -13.999 -12.077 8.43 0.6 23.19 1 N4 DNX 204 A 1 HETATM 12 N N4 DNX . B . E 4 -15.021 -11.908 8.22 0.4 22.79 1 N4 DNX 204 A 1 HETATM 13 C C5 DNX . A . E 4 -13.371 -10.741 6.506 0.6 15.46 ? C5 DNX 204 A 1 HETATM 14 C C5 DNX . B . E 4 -13.91 -10.562 6.418 0.4 18.23 ? C5 DNX 204 A 1 HETATM 15 C C6 DNX . A . E 4 -13.274 -10.525 5.155 0.6 13.24 ? C6 DNX 204 A 1 HETATM 16 C C6 DNX . B . E 4 -13.463 -10.379 5.114 0.4 15.78 ? C6 DNX 204 A 1 HETATM 17 O O1 DNX . A . E 4 -13.579 -11.307 2.958 0.6 9.86 ? O1 DNX 204 A 1 HETATM 18 O O1 DNX . B . E 4 -13.201 -11.275 2.914 0.4 14.32 ? O1 DNX 204 A 1 HETATM 19 O O31 DNX . . . E 4 -14.811 -15.142 5.937 1 21.51 ? O31 DNX 204 A 1 HETATM 20 O O32 DNX . A . E 4 -15.699 -14.107 7.559 0.6 23.17 -1 O32 DNX 204 A 1 HETATM 21 O O32 DNX . B . E 4 -16.533 -13.99 6.437 0.4 20.44 -1 O32 DNX 204 A 1 HETATM 22 O O41 DNX . A . E 4 -14.001 -13.198 8.872 0.6 25.94 ? O41 DNX 204 A 1 HETATM 23 O O41 DNX . B . E 4 -16.185 -12.083 8.413 0.4 22.94 ? O41 DNX 204 A 1 HETATM 24 O O42 DNX . A . E 4 -13.995 -11.046 9.073 0.6 24.36 -1 O42 DNX 204 A 1 HETATM 25 O O42 DNX . B . E 4 -14.179 -11.819 9.088 0.4 25.18 -1 O42 DNX 204 A 1 HETATM 26 H H2 DNX . A . E 4 -14.584 -13.335 4.12 0.6 15.29 ? H2 DNX 204 A 1 HETATM 27 H H2 DNX . B . E 4 -14.354 -13.264 3.858 0.4 19.76 ? H2 DNX 204 A 1 HETATM 28 H H5 DNX . A . E 4 -13.068 -10.095 7.1 0.6 18.56 ? H5 DNX 204 A 1 HETATM 29 H H5 DNX . B . E 4 -13.799 -9.888 7.047 0.4 21.88 ? H5 DNX 204 A 1 HETATM 30 H H6 DNX . A . E 4 -12.882 -9.743 4.84 0.6 15.89 ? H6 DNX 204 A 1 HETATM 31 H H6 DNX . B . E 4 -13.04 -9.586 4.879 0.4 18.94 ? H6 DNX 204 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #