data_6C1K # _model_server_result.job_id wjnULMAyx7UQHzQi_tkNEg _model_server_result.datetime_utc '2024-11-23 12:05:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1307}' # _entry.id 6C1K # _exptl.entry_id 6C1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C1K _cell.length_a 126.394 _cell.length_b 126.235 _cell.length_c 191.525 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 126.235 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 176 A GLU 1158 1_555 N NA NA . A NA 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc2 A O GLY 200 A GLY 1182 1_555 M NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc3 B OE2 GLU 176 B GLU 2158 1_555 Z NA NA . B NA 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc4 B O GLY 200 B GLY 2182 1_555 Y NA NA . B NA 2310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 285 n n O1 H1P PX4 sing 286 n n O2 P1 PX4 doub 287 n n P1 O3 PX4 sing 288 n n P1 O4 PX4 sing 289 n n O3 C1 PX4 sing 290 n n C1 C2 PX4 sing 291 n n C1 H1 PX4 sing 292 n n C1 H2 PX4 sing 293 n n C2 N1 PX4 sing 294 n n C2 H3 PX4 sing 295 n n C2 H4 PX4 sing 296 n n N1 C3 PX4 sing 297 n n N1 C4 PX4 sing 298 n n N1 C5 PX4 sing 299 n n C3 H5 PX4 sing 300 n n C3 H6 PX4 sing 301 n n C3 H7 PX4 sing 302 n n C4 H8 PX4 sing 303 n n C4 H9 PX4 sing 304 n n C4 H10 PX4 sing 305 n n C5 H11 PX4 sing 306 n n C5 H12 PX4 sing 307 n n C5 H13 PX4 sing 308 n n O4 C6 PX4 sing 309 n n C6 C7 PX4 sing 310 n n C6 H14 PX4 sing 311 n n C6 H15 PX4 sing 312 n n C7 C8 PX4 sing 313 n n C7 O7 PX4 sing 314 n n C7 H16 PX4 sing 315 n n C8 O5 PX4 sing 316 n n C8 H17 PX4 sing 317 n n C8 H18 PX4 sing 318 n n O5 C9 PX4 sing 319 n n C9 O6 PX4 doub 320 n n C9 C10 PX4 sing 321 n n C10 C11 PX4 sing 322 n n C10 H19 PX4 sing 323 n n C10 H20 PX4 sing 324 n n C11 C12 PX4 sing 325 n n C11 H21 PX4 sing 326 n n C11 H22 PX4 sing 327 n n C12 C13 PX4 sing 328 n n C12 H23 PX4 sing 329 n n C12 H24 PX4 sing 330 n n C13 C14 PX4 sing 331 n n C13 H25 PX4 sing 332 n n C13 H26 PX4 sing 333 n n C14 C15 PX4 sing 334 n n C14 H27 PX4 sing 335 n n C14 H28 PX4 sing 336 n n C15 C16 PX4 sing 337 n n C15 H29 PX4 sing 338 n n C15 H30 PX4 sing 339 n n C16 C17 PX4 sing 340 n n C16 H31 PX4 sing 341 n n C16 H32 PX4 sing 342 n n C17 C18 PX4 sing 343 n n C17 H33 PX4 sing 344 n n C17 H34 PX4 sing 345 n n C18 C19 PX4 sing 346 n n C18 H35 PX4 sing 347 n n C18 H36 PX4 sing 348 n n C19 C20 PX4 sing 349 n n C19 H37 PX4 sing 350 n n C19 H38 PX4 sing 351 n n C20 C21 PX4 sing 352 n n C20 H39 PX4 sing 353 n n C20 H40 PX4 sing 354 n n C21 C22 PX4 sing 355 n n C21 H41 PX4 sing 356 n n C21 H42 PX4 sing 357 n n C22 H43 PX4 sing 358 n n C22 H44 PX4 sing 359 n n C22 H45 PX4 sing 360 n n O7 C23 PX4 sing 361 n n C23 O8 PX4 doub 362 n n C23 C24 PX4 sing 363 n n C24 C25 PX4 sing 364 n n C24 H46 PX4 sing 365 n n C24 H47 PX4 sing 366 n n C25 C26 PX4 sing 367 n n C25 H48 PX4 sing 368 n n C25 H49 PX4 sing 369 n n C26 C27 PX4 sing 370 n n C26 H50 PX4 sing 371 n n C26 H51 PX4 sing 372 n n C27 C28 PX4 sing 373 n n C27 H52 PX4 sing 374 n n C27 H53 PX4 sing 375 n n C28 C29 PX4 sing 376 n n C28 H54 PX4 sing 377 n n C28 H55 PX4 sing 378 n n C29 C30 PX4 sing 379 n n C29 H56 PX4 sing 380 n n C29 H57 PX4 sing 381 n n C30 C31 PX4 sing 382 n n C30 H58 PX4 sing 383 n n C30 H59 PX4 sing 384 n n C31 C32 PX4 sing 385 n n C31 H60 PX4 sing 386 n n C31 H61 PX4 sing 387 n n C32 C33 PX4 sing 388 n n C32 H62 PX4 sing 389 n n C32 H63 PX4 sing 390 n n C33 C34 PX4 sing 391 n n C33 H64 PX4 sing 392 n n C33 H65 PX4 sing 393 n n C34 C35 PX4 sing 394 n n C34 H66 PX4 sing 395 n n C34 H67 PX4 sing 396 n n C35 C36 PX4 sing 397 n n C35 H68 PX4 sing 398 n n C35 H69 PX4 sing 399 n n C36 H70 PX4 sing 400 n n C36 H71 PX4 sing 401 n n C36 H72 PX4 sing 402 n n # _atom_sites.entry_id 6C1K _atom_sites.fract_transf_matrix[1][1] 0.007912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GAI A 1 1301 1301 GAI GAI . D 3 PX4 A 1 1302 1401 PX4 PX4 . E 3 PX4 A 1 1303 1403 PX4 PX4 . F 3 PX4 A 1 1304 1404 PX4 PX4 . G 3 PX4 A 1 1305 1408 PX4 PX4 . H 3 PX4 A 1 1306 1409 PX4 PX4 . I 3 PX4 A 1 1307 2402 PX4 PX4 . J 3 PX4 A 1 1308 2404 PX4 PX4 . K 3 PX4 A 1 1309 2405 PX4 PX4 . L 3 PX4 A 1 1310 2406 PX4 PX4 . M 4 NA A 1 1311 1 NA NA . N 4 NA A 1 1312 1 NA NA . O 5 SO4 A 1 1313 2 SO4 SO4 . P 3 PX4 B 1 2301 1402 PX4 PX4 . Q 3 PX4 B 1 2302 1405 PX4 PX4 . R 3 PX4 B 1 2303 1406 PX4 PX4 . S 3 PX4 B 1 2304 1407 PX4 PX4 . T 2 GAI B 1 2305 2301 GAI GAI . U 3 PX4 B 1 2306 2401 PX4 PX4 . V 3 PX4 B 1 2307 2403 PX4 PX4 . W 3 PX4 B 1 2308 2407 PX4 PX4 . X 3 PX4 B 1 2309 2408 PX4 PX4 . Y 4 NA B 1 2310 1 NA NA . Z 4 NA B 1 2311 1 NA NA . AA 5 SO4 B 1 2312 1 SO4 SO4 . BA 6 HOH A 1 1401 1 HOH HOH . CA 6 HOH B 1 2401 1 HOH HOH . CA 6 HOH B 2 2402 2 HOH HOH . CA 6 HOH B 3 2403 2 HOH HOH . CA 6 HOH B 4 2404 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . I 3 25.558 50.065 6.445 1 138.29 ? O1 PX4 1307 A 1 HETATM 2 O O2 PX4 . . . I 3 27.777 50.881 7.207 1 126.08 ? O2 PX4 1307 A 1 HETATM 3 P P1 PX4 . . . I 3 26.721 49.798 7.383 1 130.74 ? P1 PX4 1307 A 1 HETATM 4 O O3 PX4 . . . I 3 27.336 48.383 7.054 1 124.06 ? O3 PX4 1307 A 1 HETATM 5 C C1 PX4 . . . I 3 26.986 47.808 5.812 1 122.61 ? C1 PX4 1307 A 1 HETATM 6 O O4 PX4 . . . I 3 26.2 49.805 8.889 1 89.89 ? O4 PX4 1307 A 1 HETATM 7 C C6 PX4 . . . I 3 26.307 51.057 9.571 1 96.29 ? C6 PX4 1307 A 1 HETATM 8 C C7 PX4 . . . I 3 25.235 51.12 10.644 1 102.6 ? C7 PX4 1307 A 1 HETATM 9 C C8 PX4 . . . I 3 25.387 49.9 11.534 1 112.42 ? C8 PX4 1307 A 1 HETATM 10 O O5 PX4 . . . I 3 26.596 49.98 12.287 1 115.51 ? O5 PX4 1307 A 1 HETATM 11 C C9 PX4 . . . I 3 26.597 49.246 13.529 1 109.87 ? C9 PX4 1307 A 1 HETATM 12 O O6 PX4 . . . I 3 26.152 48.133 13.591 1 108.63 ? O6 PX4 1307 A 1 HETATM 13 C C10 PX4 . . . I 3 27.187 49.878 14.811 1 110.33 ? C10 PX4 1307 A 1 HETATM 14 C C11 PX4 . . . I 3 27.577 48.714 15.761 1 139.96 ? C11 PX4 1307 A 1 HETATM 15 C C12 PX4 . . . I 3 26.532 48.573 16.929 1 79.3 ? C12 PX4 1307 A 1 HETATM 16 C C13 PX4 . . . I 3 27.202 47.766 18.063 1 84.24 ? C13 PX4 1307 A 1 HETATM 17 C C14 PX4 . . . I 3 26.453 47.933 19.386 1 81.19 ? C14 PX4 1307 A 1 HETATM 18 C C15 PX4 . . . I 3 26.81 49.302 20.031 1 68.59 ? C15 PX4 1307 A 1 HETATM 19 C C16 PX4 . . . I 3 26.886 49.154 21.596 1 104.28 ? C16 PX4 1307 A 1 HETATM 20 C C17 PX4 . . . I 3 25.683 48.36 22.171 1 95.87 ? C17 PX4 1307 A 1 HETATM 21 C C18 PX4 . . . I 3 26.139 47.516 23.394 1 90.65 ? C18 PX4 1307 A 1 HETATM 22 C C19 PX4 . . . I 3 24.994 47.221 24.314 1 87.65 ? C19 PX4 1307 A 1 HETATM 23 C C20 PX4 . . . I 3 24.983 45.71 24.617 1 86.75 ? C20 PX4 1307 A 1 HETATM 24 C C21 PX4 . . . I 3 23.992 45.352 25.731 1 88.61 ? C21 PX4 1307 A 1 HETATM 25 C C22 PX4 . . . I 3 23.664 43.818 25.652 1 80.56 ? C22 PX4 1307 A 1 HETATM 26 O O7 PX4 . . . I 3 25.426 52.336 11.37 1 103.56 ? O7 PX4 1307 A 1 HETATM 27 C C23 PX4 . . . I 3 24.361 52.656 12.266 1 103.78 ? C23 PX4 1307 A 1 HETATM 28 O O8 PX4 . . . I 3 23.245 52.2 12.038 1 101.97 ? O8 PX4 1307 A 1 HETATM 29 C C24 PX4 . . . I 3 24.609 53.554 13.484 1 101.06 ? C24 PX4 1307 A 1 HETATM 30 C C25 PX4 . . . I 3 25.365 52.799 14.599 1 93.55 ? C25 PX4 1307 A 1 HETATM 31 C C26 PX4 . . . I 3 24.363 52.228 15.668 1 112.05 ? C26 PX4 1307 A 1 HETATM 32 C C27 PX4 . . . I 3 24.651 52.816 17.087 1 106.44 ? C27 PX4 1307 A 1 HETATM 33 C C28 PX4 . . . I 3 24.871 51.735 18.165 1 95.02 ? C28 PX4 1307 A 1 HETATM 34 C C29 PX4 . . . I 3 23.67 51.706 19.091 1 100.75 ? C29 PX4 1307 A 1 HETATM 35 C C30 PX4 . . . I 3 24.1 51.618 20.578 1 82.75 ? C30 PX4 1307 A 1 HETATM 36 C C31 PX4 . . . I 3 22.862 51.73 21.504 1 65.68 ? C31 PX4 1307 A 1 HETATM 37 C C32 PX4 . . . I 3 23.308 51.684 22.991 1 75.38 ? C32 PX4 1307 A 1 HETATM 38 C C33 PX4 . . . I 3 22.551 50.532 23.741 1 82.81 ? C33 PX4 1307 A 1 HETATM 39 C C34 PX4 . . . I 3 22.897 50.564 25.239 1 79.15 ? C34 PX4 1307 A 1 HETATM 40 C C35 PX4 . . . I 3 22.21 49.39 25.992 1 101.92 ? C35 PX4 1307 A 1 HETATM 41 C C36 PX4 . . . I 3 22.414 49.521 27.504 1 97.96 ? C36 PX4 1307 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #