data_6C1K
#
_model_server_result.job_id            dlz6w5Yh23mNC7-mEOvMKQ 
_model_server_result.datetime_utc      '2024-11-23 12:14:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":2302}' 
#
_entry.id    6C1K 
#
_exptl.entry_id    6C1K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C1K 
_cell.length_a            126.394 
_cell.length_b            126.235 
_cell.length_c            191.525 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C1K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 126.235 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 176 A GLU 1158 1_555 N NA NA . A NA 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc2 A O GLY 200 A GLY 1182 1_555 M NA NA . A NA 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? 
metalc ? metalc3 B OE2 GLU 176 B GLU 2158 1_555 Z NA NA . B NA 2311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc4 B O GLY 200 B GLY 2182 1_555 Y NA NA . B NA 2310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 285 n n 
O1 H1P PX4 sing 286 n n 
O2 P1 PX4 doub 287 n n 
P1 O3 PX4 sing 288 n n 
P1 O4 PX4 sing 289 n n 
O3 C1 PX4 sing 290 n n 
C1 C2 PX4 sing 291 n n 
C1 H1 PX4 sing 292 n n 
C1 H2 PX4 sing 293 n n 
C2 N1 PX4 sing 294 n n 
C2 H3 PX4 sing 295 n n 
C2 H4 PX4 sing 296 n n 
N1 C3 PX4 sing 297 n n 
N1 C4 PX4 sing 298 n n 
N1 C5 PX4 sing 299 n n 
C3 H5 PX4 sing 300 n n 
C3 H6 PX4 sing 301 n n 
C3 H7 PX4 sing 302 n n 
C4 H8 PX4 sing 303 n n 
C4 H9 PX4 sing 304 n n 
C4 H10 PX4 sing 305 n n 
C5 H11 PX4 sing 306 n n 
C5 H12 PX4 sing 307 n n 
C5 H13 PX4 sing 308 n n 
O4 C6 PX4 sing 309 n n 
C6 C7 PX4 sing 310 n n 
C6 H14 PX4 sing 311 n n 
C6 H15 PX4 sing 312 n n 
C7 C8 PX4 sing 313 n n 
C7 O7 PX4 sing 314 n n 
C7 H16 PX4 sing 315 n n 
C8 O5 PX4 sing 316 n n 
C8 H17 PX4 sing 317 n n 
C8 H18 PX4 sing 318 n n 
O5 C9 PX4 sing 319 n n 
C9 O6 PX4 doub 320 n n 
C9 C10 PX4 sing 321 n n 
C10 C11 PX4 sing 322 n n 
C10 H19 PX4 sing 323 n n 
C10 H20 PX4 sing 324 n n 
C11 C12 PX4 sing 325 n n 
C11 H21 PX4 sing 326 n n 
C11 H22 PX4 sing 327 n n 
C12 C13 PX4 sing 328 n n 
C12 H23 PX4 sing 329 n n 
C12 H24 PX4 sing 330 n n 
C13 C14 PX4 sing 331 n n 
C13 H25 PX4 sing 332 n n 
C13 H26 PX4 sing 333 n n 
C14 C15 PX4 sing 334 n n 
C14 H27 PX4 sing 335 n n 
C14 H28 PX4 sing 336 n n 
C15 C16 PX4 sing 337 n n 
C15 H29 PX4 sing 338 n n 
C15 H30 PX4 sing 339 n n 
C16 C17 PX4 sing 340 n n 
C16 H31 PX4 sing 341 n n 
C16 H32 PX4 sing 342 n n 
C17 C18 PX4 sing 343 n n 
C17 H33 PX4 sing 344 n n 
C17 H34 PX4 sing 345 n n 
C18 C19 PX4 sing 346 n n 
C18 H35 PX4 sing 347 n n 
C18 H36 PX4 sing 348 n n 
C19 C20 PX4 sing 349 n n 
C19 H37 PX4 sing 350 n n 
C19 H38 PX4 sing 351 n n 
C20 C21 PX4 sing 352 n n 
C20 H39 PX4 sing 353 n n 
C20 H40 PX4 sing 354 n n 
C21 C22 PX4 sing 355 n n 
C21 H41 PX4 sing 356 n n 
C21 H42 PX4 sing 357 n n 
C22 H43 PX4 sing 358 n n 
C22 H44 PX4 sing 359 n n 
C22 H45 PX4 sing 360 n n 
O7 C23 PX4 sing 361 n n 
C23 O8 PX4 doub 362 n n 
C23 C24 PX4 sing 363 n n 
C24 C25 PX4 sing 364 n n 
C24 H46 PX4 sing 365 n n 
C24 H47 PX4 sing 366 n n 
C25 C26 PX4 sing 367 n n 
C25 H48 PX4 sing 368 n n 
C25 H49 PX4 sing 369 n n 
C26 C27 PX4 sing 370 n n 
C26 H50 PX4 sing 371 n n 
C26 H51 PX4 sing 372 n n 
C27 C28 PX4 sing 373 n n 
C27 H52 PX4 sing 374 n n 
C27 H53 PX4 sing 375 n n 
C28 C29 PX4 sing 376 n n 
C28 H54 PX4 sing 377 n n 
C28 H55 PX4 sing 378 n n 
C29 C30 PX4 sing 379 n n 
C29 H56 PX4 sing 380 n n 
C29 H57 PX4 sing 381 n n 
C30 C31 PX4 sing 382 n n 
C30 H58 PX4 sing 383 n n 
C30 H59 PX4 sing 384 n n 
C31 C32 PX4 sing 385 n n 
C31 H60 PX4 sing 386 n n 
C31 H61 PX4 sing 387 n n 
C32 C33 PX4 sing 388 n n 
C32 H62 PX4 sing 389 n n 
C32 H63 PX4 sing 390 n n 
C33 C34 PX4 sing 391 n n 
C33 H64 PX4 sing 392 n n 
C33 H65 PX4 sing 393 n n 
C34 C35 PX4 sing 394 n n 
C34 H66 PX4 sing 395 n n 
C34 H67 PX4 sing 396 n n 
C35 C36 PX4 sing 397 n n 
C35 H68 PX4 sing 398 n n 
C35 H69 PX4 sing 399 n n 
C36 H70 PX4 sing 400 n n 
C36 H71 PX4 sing 401 n n 
C36 H72 PX4 sing 402 n n 
#
_atom_sites.entry_id                     6C1K 
_atom_sites.fract_transf_matrix[1][1]    0.007912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005221 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GAI A 1 1301 1301 GAI GAI . 
D 3 PX4 A 1 1302 1401 PX4 PX4 . 
E 3 PX4 A 1 1303 1403 PX4 PX4 . 
F 3 PX4 A 1 1304 1404 PX4 PX4 . 
G 3 PX4 A 1 1305 1408 PX4 PX4 . 
H 3 PX4 A 1 1306 1409 PX4 PX4 . 
I 3 PX4 A 1 1307 2402 PX4 PX4 . 
J 3 PX4 A 1 1308 2404 PX4 PX4 . 
K 3 PX4 A 1 1309 2405 PX4 PX4 . 
L 3 PX4 A 1 1310 2406 PX4 PX4 . 
M 4 NA A 1 1311 1 NA NA . 
N 4 NA A 1 1312 1 NA NA . 
O 5 SO4 A 1 1313 2 SO4 SO4 . 
P 3 PX4 B 1 2301 1402 PX4 PX4 . 
Q 3 PX4 B 1 2302 1405 PX4 PX4 . 
R 3 PX4 B 1 2303 1406 PX4 PX4 . 
S 3 PX4 B 1 2304 1407 PX4 PX4 . 
T 2 GAI B 1 2305 2301 GAI GAI . 
U 3 PX4 B 1 2306 2401 PX4 PX4 . 
V 3 PX4 B 1 2307 2403 PX4 PX4 . 
W 3 PX4 B 1 2308 2407 PX4 PX4 . 
X 3 PX4 B 1 2309 2408 PX4 PX4 . 
Y 4 NA B 1 2310 1 NA NA . 
Z 4 NA B 1 2311 1 NA NA . 
AA 5 SO4 B 1 2312 1 SO4 SO4 . 
BA 6 HOH A 1 1401 1 HOH HOH . 
CA 6 HOH B 1 2401 1 HOH HOH . 
CA 6 HOH B 2 2402 2 HOH HOH . 
CA 6 HOH B 3 2403 2 HOH HOH . 
CA 6 HOH B 4 2404 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . Q 3 26.528 72.228 7.052 1 157.38 ? O1 PX4 2302 B 1 
HETATM 2 O O2 PX4 . . . Q 3 28.548 71.062 6.312 1 161.86 ? O2 PX4 2302 B 1 
HETATM 3 P P1 PX4 . . . Q 3 27.088 71.34 5.972 1 162.18 ? P1 PX4 2302 B 1 
HETATM 4 O O3 PX4 . . . Q 3 26.993 72.158 4.611 1 143.82 ? O3 PX4 2302 B 1 
HETATM 5 C C1 PX4 . . . Q 3 25.816 72.1 3.82 1 138.17 ? C1 PX4 2302 B 1 
HETATM 6 C C2 PX4 . . . Q 3 26.188 71.531 2.43 1 131.14 ? C2 PX4 2302 B 1 
HETATM 7 N N1 PX4 . . . Q 3 25.193 70.556 1.974 1 123.94 ? N1 PX4 2302 B 1 
HETATM 8 C C3 PX4 . . . Q 3 25.639 69.952 0.737 1 119.1 ? C3 PX4 2302 B 1 
HETATM 9 C C4 PX4 . . . Q 3 25.008 69.545 2.954 1 116.53 ? C4 PX4 2302 B 1 
HETATM 10 C C5 PX4 . . . Q 3 23.927 71.27 1.729 1 125.9 ? C5 PX4 2302 B 1 
HETATM 11 O O4 PX4 . . . Q 3 26.294 69.936 5.848 1 105.96 ? O4 PX4 2302 B 1 
HETATM 12 C C6 PX4 . . . Q 3 26.723 68.804 6.619 1 104.63 ? C6 PX4 2302 B 1 
HETATM 13 C C7 PX4 . . . Q 3 26.438 69.146 8.086 1 119.95 ? C7 PX4 2302 B 1 
HETATM 14 C C8 PX4 . . . Q 3 25.066 68.613 8.43 1 122.21 ? C8 PX4 2302 B 1 
HETATM 15 O O5 PX4 . . . Q 3 24.113 69.663 8.28 1 117.75 ? O5 PX4 2302 B 1 
HETATM 16 C C9 PX4 . . . Q 3 24.217 70.811 9.144 1 88.86 ? C9 PX4 2302 B 1 
HETATM 17 O O6 PX4 . . . Q 3 24.805 71.784 8.787 1 86.34 ? O6 PX4 2302 B 1 
HETATM 18 C C10 PX4 . . . Q 3 23.526 70.808 10.522 1 64.78 ? C10 PX4 2302 B 1 
HETATM 19 C C11 PX4 . . . Q 3 22.692 69.521 10.673 1 52.95 ? C11 PX4 2302 B 1 
HETATM 20 C C12 PX4 . . . Q 3 22.5 69.182 12.193 1 76.79 ? C12 PX4 2302 B 1 
HETATM 21 C C13 PX4 . . . Q 3 23.702 69.657 13.044 1 75.92 ? C13 PX4 2302 B 1 
HETATM 22 C C14 PX4 . . . Q 3 23.438 69.31 14.513 1 76.29 ? C14 PX4 2302 B 1 
HETATM 23 C C15 PX4 . . . Q 3 23.415 70.619 15.358 1 85.58 ? C15 PX4 2302 B 1 
HETATM 24 C C16 PX4 . . . Q 3 23.863 70.275 16.811 1 71.15 ? C16 PX4 2302 B 1 
HETATM 25 C C17 PX4 . . . Q 3 23.167 71.196 17.837 1 71.29 ? C17 PX4 2302 B 1 
HETATM 26 C C18 PX4 . . . Q 3 22.981 70.34 19.119 1 82.98 ? C18 PX4 2302 B 1 
HETATM 27 C C19 PX4 . . . Q 3 22.53 71.205 20.24 1 84.53 ? C19 PX4 2302 B 1 
HETATM 28 C C20 PX4 . . . Q 3 21.569 70.379 21.114 1 89.81 ? C20 PX4 2302 B 1 
HETATM 29 C C21 PX4 . . . Q 3 22.204 70.137 22.488 1 99.73 ? C21 PX4 2302 B 1 
HETATM 30 C C22 PX4 . . . Q 3 22.314 71.474 23.304 1 100.5 ? C22 PX4 2302 B 1 
HETATM 31 O O7 PX4 . . . Q 3 27.433 68.604 8.972 1 117.24 ? O7 PX4 2302 B 1 
HETATM 32 C C23 PX4 . . . Q 3 27.163 68.75 10.367 1 94.15 ? C23 PX4 2302 B 1 
HETATM 33 O O8 PX4 . . . Q 3 26.622 69.776 10.758 1 88.72 ? O8 PX4 2302 B 1 
HETATM 34 C C24 PX4 . . . Q 3 27.562 67.621 11.325 1 87.91 ? C24 PX4 2302 B 1 
HETATM 35 C C25 PX4 . . . Q 3 27.168 67.935 12.78 1 86.71 ? C25 PX4 2302 B 1 
HETATM 36 C C26 PX4 . . . Q 3 27.763 66.865 13.759 1 106.41 ? C26 PX4 2302 B 1 
HETATM 37 C C27 PX4 . . . Q 3 28.331 67.543 15.045 1 103 ? C27 PX4 2302 B 1 
HETATM 38 C C28 PX4 . . . Q 3 27.215 68.022 15.99 1 103.6 ? C28 PX4 2302 B 1 
HETATM 39 C C29 PX4 . . . Q 3 27.321 67.326 17.343 1 104.13 ? C29 PX4 2302 B 1 
HETATM 40 C C30 PX4 . . . Q 3 27.562 68.376 18.45 1 92.26 ? C30 PX4 2302 B 1 
HETATM 41 C C31 PX4 . . . Q 3 26.466 68.315 19.534 1 88.82 ? C31 PX4 2302 B 1 
HETATM 42 C C32 PX4 . . . Q 3 26.579 69.616 20.386 1 115.1 ? C32 PX4 2302 B 1 
HETATM 43 C C33 PX4 . . . Q 3 27.49 69.364 21.641 1 106.97 ? C33 PX4 2302 B 1 
HETATM 44 C C34 PX4 . . . Q 3 27.564 70.611 22.541 1 102.95 ? C34 PX4 2302 B 1 
HETATM 45 C C35 PX4 . . . Q 3 26.143 71.018 23.01 1 85.09 ? C35 PX4 2302 B 1 
HETATM 46 C C36 PX4 . . . Q 3 25.517 69.882 23.807 1 85.43 ? C36 PX4 2302 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           46 
#