data_6C1M # _model_server_result.job_id GfdWTxwW0sq7ImyNVEhuZA _model_server_result.datetime_utc '2024-11-23 12:16:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1309}' # _entry.id 6C1M # _exptl.entry_id 6C1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C1M _cell.length_a 126.33 _cell.length_b 126.244 _cell.length_c 191.585 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 126.33 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 K N N ? 2 L N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 176 A GLU 1158 1_555 N NA NA . A NA 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc2 A O GLY 200 A GLY 1182 1_555 O NA NA . A NA 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc3 B OE2 GLU 176 B GLU 2158 1_555 EA NA NA . B NA 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc4 B O GLY 200 B GLY 2182 1_555 FA NA NA . B NA 2316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc5 FA NA NA . B NA 2316 1_555 IA O HOH . B HOH 2416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 393 n n O1 H1P PX4 sing 394 n n O2 P1 PX4 doub 395 n n P1 O3 PX4 sing 396 n n P1 O4 PX4 sing 397 n n O3 C1 PX4 sing 398 n n C1 C2 PX4 sing 399 n n C1 H1 PX4 sing 400 n n C1 H2 PX4 sing 401 n n C2 N1 PX4 sing 402 n n C2 H3 PX4 sing 403 n n C2 H4 PX4 sing 404 n n N1 C3 PX4 sing 405 n n N1 C4 PX4 sing 406 n n N1 C5 PX4 sing 407 n n C3 H5 PX4 sing 408 n n C3 H6 PX4 sing 409 n n C3 H7 PX4 sing 410 n n C4 H8 PX4 sing 411 n n C4 H9 PX4 sing 412 n n C4 H10 PX4 sing 413 n n C5 H11 PX4 sing 414 n n C5 H12 PX4 sing 415 n n C5 H13 PX4 sing 416 n n O4 C6 PX4 sing 417 n n C6 C7 PX4 sing 418 n n C6 H14 PX4 sing 419 n n C6 H15 PX4 sing 420 n n C7 C8 PX4 sing 421 n n C7 O7 PX4 sing 422 n n C7 H16 PX4 sing 423 n n C8 O5 PX4 sing 424 n n C8 H17 PX4 sing 425 n n C8 H18 PX4 sing 426 n n O5 C9 PX4 sing 427 n n C9 O6 PX4 doub 428 n n C9 C10 PX4 sing 429 n n C10 C11 PX4 sing 430 n n C10 H19 PX4 sing 431 n n C10 H20 PX4 sing 432 n n C11 C12 PX4 sing 433 n n C11 H21 PX4 sing 434 n n C11 H22 PX4 sing 435 n n C12 C13 PX4 sing 436 n n C12 H23 PX4 sing 437 n n C12 H24 PX4 sing 438 n n C13 C14 PX4 sing 439 n n C13 H25 PX4 sing 440 n n C13 H26 PX4 sing 441 n n C14 C15 PX4 sing 442 n n C14 H27 PX4 sing 443 n n C14 H28 PX4 sing 444 n n C15 C16 PX4 sing 445 n n C15 H29 PX4 sing 446 n n C15 H30 PX4 sing 447 n n C16 C17 PX4 sing 448 n n C16 H31 PX4 sing 449 n n C16 H32 PX4 sing 450 n n C17 C18 PX4 sing 451 n n C17 H33 PX4 sing 452 n n C17 H34 PX4 sing 453 n n C18 C19 PX4 sing 454 n n C18 H35 PX4 sing 455 n n C18 H36 PX4 sing 456 n n C19 C20 PX4 sing 457 n n C19 H37 PX4 sing 458 n n C19 H38 PX4 sing 459 n n C20 C21 PX4 sing 460 n n C20 H39 PX4 sing 461 n n C20 H40 PX4 sing 462 n n C21 C22 PX4 sing 463 n n C21 H41 PX4 sing 464 n n C21 H42 PX4 sing 465 n n C22 H43 PX4 sing 466 n n C22 H44 PX4 sing 467 n n C22 H45 PX4 sing 468 n n O7 C23 PX4 sing 469 n n C23 O8 PX4 doub 470 n n C23 C24 PX4 sing 471 n n C24 C25 PX4 sing 472 n n C24 H46 PX4 sing 473 n n C24 H47 PX4 sing 474 n n C25 C26 PX4 sing 475 n n C25 H48 PX4 sing 476 n n C25 H49 PX4 sing 477 n n C26 C27 PX4 sing 478 n n C26 H50 PX4 sing 479 n n C26 H51 PX4 sing 480 n n C27 C28 PX4 sing 481 n n C27 H52 PX4 sing 482 n n C27 H53 PX4 sing 483 n n C28 C29 PX4 sing 484 n n C28 H54 PX4 sing 485 n n C28 H55 PX4 sing 486 n n C29 C30 PX4 sing 487 n n C29 H56 PX4 sing 488 n n C29 H57 PX4 sing 489 n n C30 C31 PX4 sing 490 n n C30 H58 PX4 sing 491 n n C30 H59 PX4 sing 492 n n C31 C32 PX4 sing 493 n n C31 H60 PX4 sing 494 n n C31 H61 PX4 sing 495 n n C32 C33 PX4 sing 496 n n C32 H62 PX4 sing 497 n n C32 H63 PX4 sing 498 n n C33 C34 PX4 sing 499 n n C33 H64 PX4 sing 500 n n C33 H65 PX4 sing 501 n n C34 C35 PX4 sing 502 n n C34 H66 PX4 sing 503 n n C34 H67 PX4 sing 504 n n C35 C36 PX4 sing 505 n n C35 H68 PX4 sing 506 n n C35 H69 PX4 sing 507 n n C36 H70 PX4 sing 508 n n C36 H71 PX4 sing 509 n n C36 H72 PX4 sing 510 n n # _atom_sites.entry_id 6C1M _atom_sites.fract_transf_matrix[1][1] 0.007916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PX4 A 1 1301 1301 PX4 PX4 . D 2 PX4 A 1 1302 1302 PX4 PX4 . E 2 PX4 A 1 1303 1305 PX4 PX4 . F 3 1N7 A 1 1304 1306 1N7 1N7 . G 3 1N7 A 1 1305 1308 1N7 1N7 . H 3 1N7 A 1 1306 1309 1N7 1N7 . I 3 1N7 A 1 1307 1310 1N7 1N7 . J 4 MGX A 1 1308 1401 MGX MGX . K 2 PX4 A 1 1309 2302 PX4 PX4 . L 2 PX4 A 1 1310 2304 PX4 PX4 . M 3 1N7 A 1 1311 2308 1N7 1N7 . N 5 NA A 1 1312 1 NA NA . O 5 NA A 1 1313 1 NA NA . P 6 SO4 A 1 1314 1 SO4 SO4 . Q 2 PX4 B 1 2301 1303 PX4 PX4 . R 2 PX4 B 1 2302 1304 PX4 PX4 . S 2 PX4 B 1 2303 1307 PX4 PX4 . T 2 PX4 B 1 2304 2301 PX4 PX4 . U 2 PX4 B 1 2305 2303 PX4 PX4 . V 2 PX4 B 1 2306 2305 PX4 PX4 . W 2 PX4 B 1 2307 2306 PX4 PX4 . X 2 PX4 B 1 2308 2307 PX4 PX4 . Y 2 PX4 B 1 2309 2309 PX4 PX4 . Z 2 PX4 B 1 2310 2310 PX4 PX4 . AA 3 1N7 B 1 2311 2311 1N7 1N7 . BA 3 1N7 B 1 2312 2312 1N7 1N7 . CA 3 1N7 B 1 2313 2313 1N7 1N7 . DA 4 MGX B 1 2314 2401 MGX MGX . EA 5 NA B 1 2315 1 NA NA . FA 5 NA B 1 2316 1 NA NA . GA 6 SO4 B 1 2317 2 SO4 SO4 . HA 7 HOH A 1 1401 1 HOH HOH . HA 7 HOH A 2 1402 4 HOH HOH . HA 7 HOH A 3 1403 2 HOH HOH . HA 7 HOH A 4 1404 1 HOH HOH . HA 7 HOH A 5 1405 4 HOH HOH . HA 7 HOH A 6 1406 3 HOH HOH . HA 7 HOH A 7 1407 2 HOH HOH . HA 7 HOH A 8 1408 1 HOH HOH . HA 7 HOH A 9 1409 1501 HOH HOH . HA 7 HOH A 10 1410 5 HOH HOH . HA 7 HOH A 11 1411 1 HOH HOH . HA 7 HOH A 12 1412 1 HOH HOH . HA 7 HOH A 13 1413 4 HOH HOH . HA 7 HOH A 14 1414 1 HOH HOH . IA 7 HOH B 1 2401 3 HOH HOH . IA 7 HOH B 2 2402 2 HOH HOH . IA 7 HOH B 3 2403 1 HOH HOH . IA 7 HOH B 4 2404 1 HOH HOH . IA 7 HOH B 5 2405 5 HOH HOH . IA 7 HOH B 6 2406 2 HOH HOH . IA 7 HOH B 7 2407 2 HOH HOH . IA 7 HOH B 8 2408 3 HOH HOH . IA 7 HOH B 9 2409 1 HOH HOH . IA 7 HOH B 10 2410 4 HOH HOH . IA 7 HOH B 11 2411 2501 HOH HOH . IA 7 HOH B 12 2412 1 HOH HOH . IA 7 HOH B 13 2413 6 HOH HOH . IA 7 HOH B 14 2414 2 HOH HOH . IA 7 HOH B 15 2415 4 HOH HOH . IA 7 HOH B 16 2416 1 HOH HOH . IA 7 HOH B 17 2417 1 HOH HOH . IA 7 HOH B 18 2418 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . K 2 37.515 12.959 198.123 1 159.33 ? O1 PX4 1309 A 1 HETATM 2 O O2 PX4 . . . K 2 35.312 12.16 198.947 1 144.74 ? O2 PX4 1309 A 1 HETATM 3 P P1 PX4 . . . K 2 36.39 13.225 199.103 1 143.7 ? P1 PX4 1309 A 1 HETATM 4 O O3 PX4 . . . K 2 35.781 14.642 198.796 1 113.37 ? O3 PX4 1309 A 1 HETATM 5 C C1 PX4 . . . K 2 36.301 15.315 197.662 1 117.65 ? C1 PX4 1309 A 1 HETATM 6 O O4 PX4 . . . K 2 36.981 13.208 200.585 1 99.43 ? O4 PX4 1309 A 1 HETATM 7 C C6 PX4 . . . K 2 37.01 11.932 201.245 1 103.36 ? C6 PX4 1309 A 1 HETATM 8 C C7 PX4 . . . K 2 37.924 12.011 202.464 1 110.14 ? C7 PX4 1309 A 1 HETATM 9 C C8 PX4 . . . K 2 37.682 13.328 203.179 1 105.98 ? C8 PX4 1309 A 1 HETATM 10 O O5 PX4 . . . K 2 36.696 13.153 204.191 1 105.66 ? O5 PX4 1309 A 1 HETATM 11 C C9 PX4 . . . K 2 36.635 14.193 205.184 1 100.12 ? C9 PX4 1309 A 1 HETATM 12 O O6 PX4 . . . K 2 36.235 15.286 204.894 1 101.87 ? O6 PX4 1309 A 1 HETATM 13 C C10 PX4 . . . K 2 37.063 13.926 206.65 1 106.87 ? C10 PX4 1309 A 1 HETATM 14 C C11 PX4 . . . K 2 36.083 14.703 207.57 1 76.26 ? C11 PX4 1309 A 1 HETATM 15 C C12 PX4 . . . K 2 36.781 15.197 208.888 1 72.96 ? C12 PX4 1309 A 1 HETATM 16 C C13 PX4 . . . K 2 35.942 14.636 210.062 1 84.14 ? C13 PX4 1309 A 1 HETATM 17 C C14 PX4 . . . K 2 36.408 15.228 211.391 1 87.96 ? C14 PX4 1309 A 1 HETATM 18 C C15 PX4 . . . K 2 36.562 14.074 212.424 1 97.16 ? C15 PX4 1309 A 1 HETATM 19 C C16 PX4 . . . K 2 36.341 14.629 213.871 1 97.52 ? C16 PX4 1309 A 1 HETATM 20 C C17 PX4 . . . K 2 37.675 15.168 214.447 1 96.14 ? C17 PX4 1309 A 1 HETATM 21 C C18 PX4 . . . K 2 37.364 16.372 215.374 1 89.37 ? C18 PX4 1309 A 1 HETATM 22 C C19 PX4 . . . K 2 38.422 16.55 216.416 1 87.44 ? C19 PX4 1309 A 1 HETATM 23 C C20 PX4 . . . K 2 38.451 18.045 216.793 1 89.5 ? C20 PX4 1309 A 1 HETATM 24 C C21 PX4 . . . K 2 39.736 18.4 217.544 1 87.88 ? C21 PX4 1309 A 1 HETATM 25 C C22 PX4 . . . K 2 40.063 19.911 217.286 1 96.64 ? C22 PX4 1309 A 1 HETATM 26 O O7 PX4 . . . K 2 37.629 10.889 203.3 1 120.07 ? O7 PX4 1309 A 1 HETATM 27 C C23 PX4 . . . K 2 38.733 10.429 204.075 1 116.5 ? C23 PX4 1309 A 1 HETATM 28 O O8 PX4 . . . K 2 39.861 10.716 203.707 1 114.41 ? O8 PX4 1309 A 1 HETATM 29 C C24 PX4 . . . K 2 38.508 9.599 205.34 1 112.08 ? C24 PX4 1309 A 1 HETATM 30 C C25 PX4 . . . K 2 38.031 10.485 206.511 1 105.03 ? C25 PX4 1309 A 1 HETATM 31 C C26 PX4 . . . K 2 39.147 10.642 207.612 1 148.71 ? C26 PX4 1309 A 1 HETATM 32 C C27 PX4 . . . K 2 38.591 10.294 209.027 1 105.67 ? C27 PX4 1309 A 1 HETATM 33 C C28 PX4 . . . K 2 38.788 11.441 210.037 1 101.44 ? C28 PX4 1309 A 1 HETATM 34 C C29 PX4 . . . K 2 39.759 11.006 211.124 1 112.16 ? C29 PX4 1309 A 1 HETATM 35 C C30 PX4 . . . K 2 39.186 11.264 212.544 1 106.01 ? C30 PX4 1309 A 1 HETATM 36 C C31 PX4 . . . K 2 40.313 11.662 213.531 1 81.81 ? C31 PX4 1309 A 1 HETATM 37 C C32 PX4 . . . K 2 39.683 12.217 214.834 1 96.78 ? C32 PX4 1309 A 1 HETATM 38 C C33 PX4 . . . K 2 40.77 12.819 215.796 1 90.91 ? C33 PX4 1309 A 1 HETATM 39 C C34 PX4 . . . K 2 40.111 13.301 217.103 1 90.76 ? C34 PX4 1309 A 1 HETATM 40 C C35 PX4 . . . K 2 41.156 13.975 218.039 1 111.76 ? C35 PX4 1309 A 1 HETATM 41 C C36 PX4 . . . K 2 40.904 13.617 219.506 1 93.73 ? C36 PX4 1309 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 41 #