data_6C1M
#
_model_server_result.job_id            aB10aPyYhLS7iSaGRtNwcQ 
_model_server_result.datetime_utc      '2024-11-27 04:06:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":2303}' 
#
_entry.id    6C1M 
#
_exptl.entry_id    6C1M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C1M 
_cell.length_a            126.33 
_cell.length_b            126.244 
_cell.length_c            191.585 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C1M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 126.33 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 K N N 
? 2 L N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 176 A GLU 1158 1_555 N NA NA . A NA 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? 
metalc ? metalc2 A O GLY 200 A GLY 1182 1_555 O NA NA . A NA 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? 
metalc ? metalc3 B OE2 GLU 176 B GLU 2158 1_555 EA NA NA . B NA 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? 
metalc ? metalc4 B O GLY 200 B GLY 2182 1_555 FA NA NA . B NA 2316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? 
metalc ? metalc5 FA NA NA . B NA 2316 1_555 IA O HOH . B HOH 2416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 393 n n 
O1 H1P PX4 sing 394 n n 
O2 P1 PX4 doub 395 n n 
P1 O3 PX4 sing 396 n n 
P1 O4 PX4 sing 397 n n 
O3 C1 PX4 sing 398 n n 
C1 C2 PX4 sing 399 n n 
C1 H1 PX4 sing 400 n n 
C1 H2 PX4 sing 401 n n 
C2 N1 PX4 sing 402 n n 
C2 H3 PX4 sing 403 n n 
C2 H4 PX4 sing 404 n n 
N1 C3 PX4 sing 405 n n 
N1 C4 PX4 sing 406 n n 
N1 C5 PX4 sing 407 n n 
C3 H5 PX4 sing 408 n n 
C3 H6 PX4 sing 409 n n 
C3 H7 PX4 sing 410 n n 
C4 H8 PX4 sing 411 n n 
C4 H9 PX4 sing 412 n n 
C4 H10 PX4 sing 413 n n 
C5 H11 PX4 sing 414 n n 
C5 H12 PX4 sing 415 n n 
C5 H13 PX4 sing 416 n n 
O4 C6 PX4 sing 417 n n 
C6 C7 PX4 sing 418 n n 
C6 H14 PX4 sing 419 n n 
C6 H15 PX4 sing 420 n n 
C7 C8 PX4 sing 421 n n 
C7 O7 PX4 sing 422 n n 
C7 H16 PX4 sing 423 n n 
C8 O5 PX4 sing 424 n n 
C8 H17 PX4 sing 425 n n 
C8 H18 PX4 sing 426 n n 
O5 C9 PX4 sing 427 n n 
C9 O6 PX4 doub 428 n n 
C9 C10 PX4 sing 429 n n 
C10 C11 PX4 sing 430 n n 
C10 H19 PX4 sing 431 n n 
C10 H20 PX4 sing 432 n n 
C11 C12 PX4 sing 433 n n 
C11 H21 PX4 sing 434 n n 
C11 H22 PX4 sing 435 n n 
C12 C13 PX4 sing 436 n n 
C12 H23 PX4 sing 437 n n 
C12 H24 PX4 sing 438 n n 
C13 C14 PX4 sing 439 n n 
C13 H25 PX4 sing 440 n n 
C13 H26 PX4 sing 441 n n 
C14 C15 PX4 sing 442 n n 
C14 H27 PX4 sing 443 n n 
C14 H28 PX4 sing 444 n n 
C15 C16 PX4 sing 445 n n 
C15 H29 PX4 sing 446 n n 
C15 H30 PX4 sing 447 n n 
C16 C17 PX4 sing 448 n n 
C16 H31 PX4 sing 449 n n 
C16 H32 PX4 sing 450 n n 
C17 C18 PX4 sing 451 n n 
C17 H33 PX4 sing 452 n n 
C17 H34 PX4 sing 453 n n 
C18 C19 PX4 sing 454 n n 
C18 H35 PX4 sing 455 n n 
C18 H36 PX4 sing 456 n n 
C19 C20 PX4 sing 457 n n 
C19 H37 PX4 sing 458 n n 
C19 H38 PX4 sing 459 n n 
C20 C21 PX4 sing 460 n n 
C20 H39 PX4 sing 461 n n 
C20 H40 PX4 sing 462 n n 
C21 C22 PX4 sing 463 n n 
C21 H41 PX4 sing 464 n n 
C21 H42 PX4 sing 465 n n 
C22 H43 PX4 sing 466 n n 
C22 H44 PX4 sing 467 n n 
C22 H45 PX4 sing 468 n n 
O7 C23 PX4 sing 469 n n 
C23 O8 PX4 doub 470 n n 
C23 C24 PX4 sing 471 n n 
C24 C25 PX4 sing 472 n n 
C24 H46 PX4 sing 473 n n 
C24 H47 PX4 sing 474 n n 
C25 C26 PX4 sing 475 n n 
C25 H48 PX4 sing 476 n n 
C25 H49 PX4 sing 477 n n 
C26 C27 PX4 sing 478 n n 
C26 H50 PX4 sing 479 n n 
C26 H51 PX4 sing 480 n n 
C27 C28 PX4 sing 481 n n 
C27 H52 PX4 sing 482 n n 
C27 H53 PX4 sing 483 n n 
C28 C29 PX4 sing 484 n n 
C28 H54 PX4 sing 485 n n 
C28 H55 PX4 sing 486 n n 
C29 C30 PX4 sing 487 n n 
C29 H56 PX4 sing 488 n n 
C29 H57 PX4 sing 489 n n 
C30 C31 PX4 sing 490 n n 
C30 H58 PX4 sing 491 n n 
C30 H59 PX4 sing 492 n n 
C31 C32 PX4 sing 493 n n 
C31 H60 PX4 sing 494 n n 
C31 H61 PX4 sing 495 n n 
C32 C33 PX4 sing 496 n n 
C32 H62 PX4 sing 497 n n 
C32 H63 PX4 sing 498 n n 
C33 C34 PX4 sing 499 n n 
C33 H64 PX4 sing 500 n n 
C33 H65 PX4 sing 501 n n 
C34 C35 PX4 sing 502 n n 
C34 H66 PX4 sing 503 n n 
C34 H67 PX4 sing 504 n n 
C35 C36 PX4 sing 505 n n 
C35 H68 PX4 sing 506 n n 
C35 H69 PX4 sing 507 n n 
C36 H70 PX4 sing 508 n n 
C36 H71 PX4 sing 509 n n 
C36 H72 PX4 sing 510 n n 
#
_atom_sites.entry_id                     6C1M 
_atom_sites.fract_transf_matrix[1][1]    0.007916 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00522 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PX4 A 1 1301 1301 PX4 PX4 . 
D 2 PX4 A 1 1302 1302 PX4 PX4 . 
E 2 PX4 A 1 1303 1305 PX4 PX4 . 
F 3 1N7 A 1 1304 1306 1N7 1N7 . 
G 3 1N7 A 1 1305 1308 1N7 1N7 . 
H 3 1N7 A 1 1306 1309 1N7 1N7 . 
I 3 1N7 A 1 1307 1310 1N7 1N7 . 
J 4 MGX A 1 1308 1401 MGX MGX . 
K 2 PX4 A 1 1309 2302 PX4 PX4 . 
L 2 PX4 A 1 1310 2304 PX4 PX4 . 
M 3 1N7 A 1 1311 2308 1N7 1N7 . 
N 5 NA A 1 1312 1 NA NA . 
O 5 NA A 1 1313 1 NA NA . 
P 6 SO4 A 1 1314 1 SO4 SO4 . 
Q 2 PX4 B 1 2301 1303 PX4 PX4 . 
R 2 PX4 B 1 2302 1304 PX4 PX4 . 
S 2 PX4 B 1 2303 1307 PX4 PX4 . 
T 2 PX4 B 1 2304 2301 PX4 PX4 . 
U 2 PX4 B 1 2305 2303 PX4 PX4 . 
V 2 PX4 B 1 2306 2305 PX4 PX4 . 
W 2 PX4 B 1 2307 2306 PX4 PX4 . 
X 2 PX4 B 1 2308 2307 PX4 PX4 . 
Y 2 PX4 B 1 2309 2309 PX4 PX4 . 
Z 2 PX4 B 1 2310 2310 PX4 PX4 . 
AA 3 1N7 B 1 2311 2311 1N7 1N7 . 
BA 3 1N7 B 1 2312 2312 1N7 1N7 . 
CA 3 1N7 B 1 2313 2313 1N7 1N7 . 
DA 4 MGX B 1 2314 2401 MGX MGX . 
EA 5 NA B 1 2315 1 NA NA . 
FA 5 NA B 1 2316 1 NA NA . 
GA 6 SO4 B 1 2317 2 SO4 SO4 . 
HA 7 HOH A 1 1401 1 HOH HOH . 
HA 7 HOH A 2 1402 4 HOH HOH . 
HA 7 HOH A 3 1403 2 HOH HOH . 
HA 7 HOH A 4 1404 1 HOH HOH . 
HA 7 HOH A 5 1405 4 HOH HOH . 
HA 7 HOH A 6 1406 3 HOH HOH . 
HA 7 HOH A 7 1407 2 HOH HOH . 
HA 7 HOH A 8 1408 1 HOH HOH . 
HA 7 HOH A 9 1409 1501 HOH HOH . 
HA 7 HOH A 10 1410 5 HOH HOH . 
HA 7 HOH A 11 1411 1 HOH HOH . 
HA 7 HOH A 12 1412 1 HOH HOH . 
HA 7 HOH A 13 1413 4 HOH HOH . 
HA 7 HOH A 14 1414 1 HOH HOH . 
IA 7 HOH B 1 2401 3 HOH HOH . 
IA 7 HOH B 2 2402 2 HOH HOH . 
IA 7 HOH B 3 2403 1 HOH HOH . 
IA 7 HOH B 4 2404 1 HOH HOH . 
IA 7 HOH B 5 2405 5 HOH HOH . 
IA 7 HOH B 6 2406 2 HOH HOH . 
IA 7 HOH B 7 2407 2 HOH HOH . 
IA 7 HOH B 8 2408 3 HOH HOH . 
IA 7 HOH B 9 2409 1 HOH HOH . 
IA 7 HOH B 10 2410 4 HOH HOH . 
IA 7 HOH B 11 2411 2501 HOH HOH . 
IA 7 HOH B 12 2412 1 HOH HOH . 
IA 7 HOH B 13 2413 6 HOH HOH . 
IA 7 HOH B 14 2414 2 HOH HOH . 
IA 7 HOH B 15 2415 4 HOH HOH . 
IA 7 HOH B 16 2416 1 HOH HOH . 
IA 7 HOH B 17 2417 1 HOH HOH . 
IA 7 HOH B 18 2418 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 PX4 . . . S 2 58.119 17.235 222.354 1 110.99 ? O4 PX4 2303 B 1 
HETATM 2 C C6 PX4 . . . S 2 58.959 16.541 221.408 1 112.73 ? C6 PX4 2303 B 1 
HETATM 3 C C7 PX4 . . . S 2 60.434 16.908 221.597 1 103.39 ? C7 PX4 2303 B 1 
HETATM 4 C C8 PX4 . . . S 2 61.303 15.678 221.443 1 106.18 ? C8 PX4 2303 B 1 
HETATM 5 O O5 PX4 . . . S 2 62.579 15.952 220.879 1 111.96 ? O5 PX4 2303 B 1 
HETATM 6 C C9 PX4 . . . S 2 63.498 14.827 220.828 1 117.49 ? C9 PX4 2303 B 1 
HETATM 7 O O6 PX4 . . . S 2 64.645 14.961 221.175 1 116.17 ? O6 PX4 2303 B 1 
HETATM 8 C C10 PX4 . . . S 2 63.045 13.428 220.321 1 183.76 ? C10 PX4 2303 B 1 
HETATM 9 C C11 PX4 . . . S 2 64.128 12.369 220.673 1 92.44 ? C11 PX4 2303 B 1 
HETATM 10 C C12 PX4 . . . S 2 64.068 11.185 219.628 1 119.97 ? C12 PX4 2303 B 1 
HETATM 11 C C13 PX4 . . . S 2 64.58 11.635 218.231 1 106.59 ? C13 PX4 2303 B 1 
HETATM 12 C C14 PX4 . . . S 2 65.118 10.422 217.455 1 110.45 ? C14 PX4 2303 B 1 
HETATM 13 C C15 PX4 . . . S 2 64.741 10.499 215.939 1 75.36 ? C15 PX4 2303 B 1 
HETATM 14 C C16 PX4 . . . S 2 64.439 9.067 215.372 1 64.54 ? C16 PX4 2303 B 1 
HETATM 15 C C17 PX4 . . . S 2 65.634 8.095 215.57 1 65.52 ? C17 PX4 2303 B 1 
HETATM 16 C C18 PX4 . . . S 2 65.176 6.713 215.042 1 70.94 ? C18 PX4 2303 B 1 
HETATM 17 C C19 PX4 . . . S 2 66.102 5.609 215.429 1 73.58 ? C19 PX4 2303 B 1 
HETATM 18 C C20 PX4 . . . S 2 65.223 4.365 215.642 1 74.15 ? C20 PX4 2303 B 1 
HETATM 19 C C21 PX4 . . . S 2 65.946 3.074 215.262 1 78.09 ? C21 PX4 2303 B 1 
HETATM 20 C C22 PX4 . . . S 2 64.837 2.032 214.874 1 92.43 ? C22 PX4 2303 B 1 
HETATM 21 O O7 PX4 . . . S 2 60.788 17.862 220.61 1 105.04 ? O7 PX4 2303 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           407 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           21 
#