data_6C1M # _model_server_result.job_id lHYe_uM9nIwvGJKZSgadPA _model_server_result.datetime_utc '2024-11-23 11:37:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":2315}' # _entry.id 6C1M # _exptl.entry_id 6C1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C1M _cell.length_a 126.33 _cell.length_b 126.244 _cell.length_c 191.585 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 126.33 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N ? 5 EA N N ? 5 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 176 A GLU 1158 1_555 N NA NA . A NA 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc2 A O GLY 200 A GLY 1182 1_555 O NA NA . A NA 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc3 B OE2 GLU 176 B GLU 2158 1_555 EA NA NA . B NA 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.03 ? metalc ? metalc4 B O GLY 200 B GLY 2182 1_555 FA NA NA . B NA 2316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc5 FA NA NA . B NA 2316 1_555 IA O HOH . B HOH 2416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.174 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6C1M _atom_sites.fract_transf_matrix[1][1] 0.007916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PX4 A 1 1301 1301 PX4 PX4 . D 2 PX4 A 1 1302 1302 PX4 PX4 . E 2 PX4 A 1 1303 1305 PX4 PX4 . F 3 1N7 A 1 1304 1306 1N7 1N7 . G 3 1N7 A 1 1305 1308 1N7 1N7 . H 3 1N7 A 1 1306 1309 1N7 1N7 . I 3 1N7 A 1 1307 1310 1N7 1N7 . J 4 MGX A 1 1308 1401 MGX MGX . K 2 PX4 A 1 1309 2302 PX4 PX4 . L 2 PX4 A 1 1310 2304 PX4 PX4 . M 3 1N7 A 1 1311 2308 1N7 1N7 . N 5 NA A 1 1312 1 NA NA . O 5 NA A 1 1313 1 NA NA . P 6 SO4 A 1 1314 1 SO4 SO4 . Q 2 PX4 B 1 2301 1303 PX4 PX4 . R 2 PX4 B 1 2302 1304 PX4 PX4 . S 2 PX4 B 1 2303 1307 PX4 PX4 . T 2 PX4 B 1 2304 2301 PX4 PX4 . U 2 PX4 B 1 2305 2303 PX4 PX4 . V 2 PX4 B 1 2306 2305 PX4 PX4 . W 2 PX4 B 1 2307 2306 PX4 PX4 . X 2 PX4 B 1 2308 2307 PX4 PX4 . Y 2 PX4 B 1 2309 2309 PX4 PX4 . Z 2 PX4 B 1 2310 2310 PX4 PX4 . AA 3 1N7 B 1 2311 2311 1N7 1N7 . BA 3 1N7 B 1 2312 2312 1N7 1N7 . CA 3 1N7 B 1 2313 2313 1N7 1N7 . DA 4 MGX B 1 2314 2401 MGX MGX . EA 5 NA B 1 2315 1 NA NA . FA 5 NA B 1 2316 1 NA NA . GA 6 SO4 B 1 2317 2 SO4 SO4 . HA 7 HOH A 1 1401 1 HOH HOH . HA 7 HOH A 2 1402 4 HOH HOH . HA 7 HOH A 3 1403 2 HOH HOH . HA 7 HOH A 4 1404 1 HOH HOH . HA 7 HOH A 5 1405 4 HOH HOH . HA 7 HOH A 6 1406 3 HOH HOH . HA 7 HOH A 7 1407 2 HOH HOH . HA 7 HOH A 8 1408 1 HOH HOH . HA 7 HOH A 9 1409 1501 HOH HOH . HA 7 HOH A 10 1410 5 HOH HOH . HA 7 HOH A 11 1411 1 HOH HOH . HA 7 HOH A 12 1412 1 HOH HOH . HA 7 HOH A 13 1413 4 HOH HOH . HA 7 HOH A 14 1414 1 HOH HOH . IA 7 HOH B 1 2401 3 HOH HOH . IA 7 HOH B 2 2402 2 HOH HOH . IA 7 HOH B 3 2403 1 HOH HOH . IA 7 HOH B 4 2404 1 HOH HOH . IA 7 HOH B 5 2405 5 HOH HOH . IA 7 HOH B 6 2406 2 HOH HOH . IA 7 HOH B 7 2407 2 HOH HOH . IA 7 HOH B 8 2408 3 HOH HOH . IA 7 HOH B 9 2409 1 HOH HOH . IA 7 HOH B 10 2410 4 HOH HOH . IA 7 HOH B 11 2411 2501 HOH HOH . IA 7 HOH B 12 2412 1 HOH HOH . IA 7 HOH B 13 2413 6 HOH HOH . IA 7 HOH B 14 2414 2 HOH HOH . IA 7 HOH B 15 2415 4 HOH HOH . IA 7 HOH B 16 2416 1 HOH HOH . IA 7 HOH B 17 2417 1 HOH HOH . IA 7 HOH B 18 2418 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id EA _atom_site.label_entity_id 5 _atom_site.Cartn_x 53.413 _atom_site.Cartn_y 4.775 _atom_site.Cartn_z 196.405 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 2315 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #