data_6C1O # _model_server_result.job_id 2hYnF0M2h2cxW3t1rMibOw _model_server_result.datetime_utc '2024-10-18 16:20:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 6C1O # _exptl.entry_id 6C1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 656.603 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-{[3-(2,6-dichloro-3,5-dimethoxyphenyl)-7-{[4-(diethylamino)butyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)prop-2-enamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.24 _cell.angle_gamma 90 _cell.entry_id 6C1O _cell.length_a 211.03 _cell.length_b 50.384 _cell.length_c 65.513 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C32 H39 Cl2 N7 O4' _chem_comp.formula_weight 656.603 _chem_comp.id MK9 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-{[3-(2,6-dichloro-3,5-dimethoxyphenyl)-7-{[4-(diethylamino)butyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBR OAS MK9 sing 237 n n OAS CAP MK9 sing 238 n n CAP CAO MK9 doub 239 n y CAP CAQ MK9 sing 240 n y CLR CAQ MK9 sing 241 n n CAO CAN MK9 sing 242 n y CAQ CAL MK9 doub 243 n y CBI CBJ MK9 doub 244 n y CBI CBH MK9 sing 245 n y CBJ CBK MK9 sing 246 n y CAN OAT MK9 sing 247 n n CAN CAM MK9 doub 248 n y CBH CBG MK9 doub 249 n y CAL CAM MK9 sing 250 n y CAL NAI MK9 sing 251 n n CBS OAT MK9 sing 252 n n OAK CAH MK9 doub 253 n n CBK NBM MK9 sing 254 n n CBK CBL MK9 doub 255 n y NBM CBN MK9 sing 256 n n CAM CLU MK9 sing 257 n n NAI CAH MK9 sing 258 n n NAI CAJ MK9 sing 259 n n CAH NAG MK9 sing 260 n n CBG CBL MK9 sing 261 n y CBG CAW MK9 sing 262 n n CBN CBO MK9 sing 263 n n CBN OBQ MK9 doub 264 n n CBO CBP MK9 doub 265 n n CAJ C5 MK9 sing 266 n n CAW NAG MK9 sing 267 n n NAG C4 MK9 sing 268 n n C5 C4 MK9 doub 269 n y C5 C6 MK9 sing 270 n y C4 N3 MK9 sing 271 n y C6 N1 MK9 doub 272 n y N3 C2 MK9 doub 273 n y N1 C2 MK9 sing 274 n y C2 NAV MK9 sing 275 n n CAX NAV MK9 sing 276 n n CAO H1 MK9 sing 277 n n CBS H2 MK9 sing 278 n n CBS H3 MK9 sing 279 n n CBS H4 MK9 sing 280 n n CBR H5 MK9 sing 281 n n CBR H6 MK9 sing 282 n n CBR H7 MK9 sing 283 n n CAJ H8 MK9 sing 284 n n CAJ H9 MK9 sing 285 n n C6 H10 MK9 sing 286 n n NAV H11 MK9 sing 287 n n CAX H12 MK9 sing 288 n n CAX H13 MK9 sing 289 n n CAW H15 MK9 sing 290 n n CAW H16 MK9 sing 291 n n CBL H17 MK9 sing 292 n n CBH H18 MK9 sing 293 n n CBI H19 MK9 sing 294 n n CBJ H20 MK9 sing 295 n n NBM H21 MK9 sing 296 n n CBO H22 MK9 sing 297 n n CBP H24 MK9 sing 298 n n CBP H25 MK9 sing 299 n n CAX CAY MK9 sing 300 n n CAY CAZ MK9 sing 301 n n CAZ C7 MK9 sing 302 n n C7 N2 MK9 sing 303 n n N2 C9 MK9 sing 304 n n N2 C8 MK9 sing 305 n n C8 C10 MK9 sing 306 n n C9 C11 MK9 sing 307 n n CAY H14 MK9 sing 308 n n CAY H23 MK9 sing 309 n n CAZ H26 MK9 sing 310 n n CAZ H27 MK9 sing 311 n n C7 H28 MK9 sing 312 n n C7 H29 MK9 sing 313 n n C9 H30 MK9 sing 314 n n C9 H31 MK9 sing 315 n n C8 H32 MK9 sing 316 n n C8 H33 MK9 sing 317 n n C10 H34 MK9 sing 318 n n C10 H35 MK9 sing 319 n n C10 H36 MK9 sing 320 n n C11 H37 MK9 sing 321 n n C11 H38 MK9 sing 322 n n C11 H39 MK9 sing 323 n n # _atom_sites.entry_id 6C1O _atom_sites.fract_transf_matrix[1][1] 0.004739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00138 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015899 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MK9 A 1 801 1 MK9 MK9 . D 3 SO4 A 1 802 1 SO4 SO4 . E 2 MK9 B 1 801 2 MK9 MK9 . F 4 HOH A 1 901 2 HOH HOH . F 4 HOH A 2 902 13 HOH HOH . F 4 HOH A 3 903 9 HOH HOH . F 4 HOH A 4 904 8 HOH HOH . F 4 HOH A 5 905 10 HOH HOH . F 4 HOH A 6 906 3 HOH HOH . F 4 HOH A 7 907 6 HOH HOH . G 4 HOH B 1 901 1 HOH HOH . G 4 HOH B 2 902 7 HOH HOH . G 4 HOH B 3 903 11 HOH HOH . G 4 HOH B 4 904 14 HOH HOH . G 4 HOH B 5 905 12 HOH HOH . G 4 HOH B 6 906 4 HOH HOH . G 4 HOH B 7 907 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLR MK9 . . . E 2 -42.826 11.417 34.235 1 57.73 ? CLR MK9 801 B 1 HETATM 2 C CAQ MK9 . . . E 2 -42.56 11.468 32.518 1 58.14 ? CAQ MK9 801 B 1 HETATM 3 C CAO MK9 . . . E 2 -41.242 10.754 30.616 1 58.96 ? CAO MK9 801 B 1 HETATM 4 C CAN MK9 . . . E 2 -42.052 11.5 29.772 1 59.26 ? CAN MK9 801 B 1 HETATM 5 O OAT MK9 . . . E 2 -41.855 11.549 28.419 1 58.85 ? OAT MK9 801 B 1 HETATM 6 C CBS MK9 . . . E 2 -40.586 11.986 27.941 1 58.12 ? CBS MK9 801 B 1 HETATM 7 C CAM MK9 . . . E 2 -43.122 12.228 30.309 1 59.26 ? CAM MK9 801 B 1 HETATM 8 CL CLU MK9 . . . E 2 -44.135 13.152 29.249 1 63.16 ? CLU MK9 801 B 1 HETATM 9 C CAP MK9 . . . E 2 -41.477 10.731 31.987 1 59.01 ? CAP MK9 801 B 1 HETATM 10 O OAS MK9 . . . E 2 -40.722 10.02 32.883 1 58.03 ? OAS MK9 801 B 1 HETATM 11 C CBR MK9 . . . E 2 -39.529 9.377 32.44 1 58.2 ? CBR MK9 801 B 1 HETATM 12 C CAL MK9 . . . E 2 -43.382 12.218 31.673 1 57.32 ? CAL MK9 801 B 1 HETATM 13 N NAI MK9 . . . E 2 -44.498 12.997 32.163 1 54.49 ? NAI MK9 801 B 1 HETATM 14 C CAJ MK9 . . . E 2 -44.048 14.236 32.802 1 53.92 ? CAJ MK9 801 B 1 HETATM 15 C C5 MK9 . . . E 2 -45.211 15.049 33.262 1 52.96 ? C5 MK9 801 B 1 HETATM 16 C C6 MK9 . . . E 2 -45.172 16.498 33.329 1 52.41 ? C6 MK9 801 B 1 HETATM 17 N N1 MK9 . . . E 2 -46.23 17.182 33.75 1 51.56 ? N1 MK9 801 B 1 HETATM 18 C C2 MK9 . . . E 2 -47.33 16.476 34.099 1 52.16 ? C2 MK9 801 B 1 HETATM 19 N NAV MK9 . . . E 2 -48.389 17.183 34.528 1 52.44 ? NAV MK9 801 B 1 HETATM 20 C CAX MK9 . . . E 2 -49.741 16.658 34.626 1 53.99 ? CAX MK9 801 B 1 HETATM 21 N N3 MK9 . . . E 2 -47.443 15.122 34.065 1 52.68 ? N3 MK9 801 B 1 HETATM 22 C C4 MK9 . . . E 2 -46.394 14.399 33.626 1 53.98 ? C4 MK9 801 B 1 HETATM 23 C CAH MK9 . . . E 2 -45.581 12.31 32.736 1 54.54 ? CAH MK9 801 B 1 HETATM 24 O OAK MK9 . . . E 2 -45.761 11.127 32.496 1 55.86 ? OAK MK9 801 B 1 HETATM 25 N NAG MK9 . . . E 2 -46.471 13.001 33.603 1 56.44 ? NAG MK9 801 B 1 HETATM 26 C CAW MK9 . . . E 2 -47.837 12.399 33.717 1 60.39 ? CAW MK9 801 B 1 HETATM 27 C CBG MK9 . . . E 2 -48.817 12.791 32.629 1 65.15 ? CBG MK9 801 B 1 HETATM 28 C CBL MK9 . . . E 2 -48.632 12.383 31.315 1 67.08 ? CBL MK9 801 B 1 HETATM 29 C CBH MK9 . . . E 2 -49.942 13.545 32.94 1 67.67 ? CBH MK9 801 B 1 HETATM 30 C CBI MK9 . . . E 2 -50.857 13.904 31.956 1 68.45 ? CBI MK9 801 B 1 HETATM 31 C CBJ MK9 . . . E 2 -50.651 13.495 30.645 1 68.25 ? CBJ MK9 801 B 1 HETATM 32 C CBK MK9 . . . E 2 -49.538 12.736 30.332 1 68.2 ? CBK MK9 801 B 1 HETATM 33 C CAY MK9 . . . E 2 -50.745 17.713 35.057 1 55.16 ? CAY MK9 801 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #