data_6C1P
#
_model_server_result.job_id            34Bey1fCDly-tceJWN14lw 
_model_server_result.datetime_utc      '2024-10-27 12:38:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c1p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1304}' 
#
_entry.id    6C1P 
#
_exptl.entry_id    6C1P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C1P 
_cell.length_a            125.5 
_cell.length_b            125.552 
_cell.length_c            192.045 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C1P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 P N N 
? 3 Q N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 384 n n 
O1 H1P PX4 sing 385 n n 
O2 P1 PX4 doub 386 n n 
P1 O3 PX4 sing 387 n n 
P1 O4 PX4 sing 388 n n 
O3 C1 PX4 sing 389 n n 
C1 C2 PX4 sing 390 n n 
C1 H1 PX4 sing 391 n n 
C1 H2 PX4 sing 392 n n 
C2 N1 PX4 sing 393 n n 
C2 H3 PX4 sing 394 n n 
C2 H4 PX4 sing 395 n n 
N1 C3 PX4 sing 396 n n 
N1 C4 PX4 sing 397 n n 
N1 C5 PX4 sing 398 n n 
C3 H5 PX4 sing 399 n n 
C3 H6 PX4 sing 400 n n 
C3 H7 PX4 sing 401 n n 
C4 H8 PX4 sing 402 n n 
C4 H9 PX4 sing 403 n n 
C4 H10 PX4 sing 404 n n 
C5 H11 PX4 sing 405 n n 
C5 H12 PX4 sing 406 n n 
C5 H13 PX4 sing 407 n n 
O4 C6 PX4 sing 408 n n 
C6 C7 PX4 sing 409 n n 
C6 H14 PX4 sing 410 n n 
C6 H15 PX4 sing 411 n n 
C7 C8 PX4 sing 412 n n 
C7 O7 PX4 sing 413 n n 
C7 H16 PX4 sing 414 n n 
C8 O5 PX4 sing 415 n n 
C8 H17 PX4 sing 416 n n 
C8 H18 PX4 sing 417 n n 
O5 C9 PX4 sing 418 n n 
C9 O6 PX4 doub 419 n n 
C9 C10 PX4 sing 420 n n 
C10 C11 PX4 sing 421 n n 
C10 H19 PX4 sing 422 n n 
C10 H20 PX4 sing 423 n n 
C11 C12 PX4 sing 424 n n 
C11 H21 PX4 sing 425 n n 
C11 H22 PX4 sing 426 n n 
C12 C13 PX4 sing 427 n n 
C12 H23 PX4 sing 428 n n 
C12 H24 PX4 sing 429 n n 
C13 C14 PX4 sing 430 n n 
C13 H25 PX4 sing 431 n n 
C13 H26 PX4 sing 432 n n 
C14 C15 PX4 sing 433 n n 
C14 H27 PX4 sing 434 n n 
C14 H28 PX4 sing 435 n n 
C15 C16 PX4 sing 436 n n 
C15 H29 PX4 sing 437 n n 
C15 H30 PX4 sing 438 n n 
C16 C17 PX4 sing 439 n n 
C16 H31 PX4 sing 440 n n 
C16 H32 PX4 sing 441 n n 
C17 C18 PX4 sing 442 n n 
C17 H33 PX4 sing 443 n n 
C17 H34 PX4 sing 444 n n 
C18 C19 PX4 sing 445 n n 
C18 H35 PX4 sing 446 n n 
C18 H36 PX4 sing 447 n n 
C19 C20 PX4 sing 448 n n 
C19 H37 PX4 sing 449 n n 
C19 H38 PX4 sing 450 n n 
C20 C21 PX4 sing 451 n n 
C20 H39 PX4 sing 452 n n 
C20 H40 PX4 sing 453 n n 
C21 C22 PX4 sing 454 n n 
C21 H41 PX4 sing 455 n n 
C21 H42 PX4 sing 456 n n 
C22 H43 PX4 sing 457 n n 
C22 H44 PX4 sing 458 n n 
C22 H45 PX4 sing 459 n n 
O7 C23 PX4 sing 460 n n 
C23 O8 PX4 doub 461 n n 
C23 C24 PX4 sing 462 n n 
C24 C25 PX4 sing 463 n n 
C24 H46 PX4 sing 464 n n 
C24 H47 PX4 sing 465 n n 
C25 C26 PX4 sing 466 n n 
C25 H48 PX4 sing 467 n n 
C25 H49 PX4 sing 468 n n 
C26 C27 PX4 sing 469 n n 
C26 H50 PX4 sing 470 n n 
C26 H51 PX4 sing 471 n n 
C27 C28 PX4 sing 472 n n 
C27 H52 PX4 sing 473 n n 
C27 H53 PX4 sing 474 n n 
C28 C29 PX4 sing 475 n n 
C28 H54 PX4 sing 476 n n 
C28 H55 PX4 sing 477 n n 
C29 C30 PX4 sing 478 n n 
C29 H56 PX4 sing 479 n n 
C29 H57 PX4 sing 480 n n 
C30 C31 PX4 sing 481 n n 
C30 H58 PX4 sing 482 n n 
C30 H59 PX4 sing 483 n n 
C31 C32 PX4 sing 484 n n 
C31 H60 PX4 sing 485 n n 
C31 H61 PX4 sing 486 n n 
C32 C33 PX4 sing 487 n n 
C32 H62 PX4 sing 488 n n 
C32 H63 PX4 sing 489 n n 
C33 C34 PX4 sing 490 n n 
C33 H64 PX4 sing 491 n n 
C33 H65 PX4 sing 492 n n 
C34 C35 PX4 sing 493 n n 
C34 H66 PX4 sing 494 n n 
C34 H67 PX4 sing 495 n n 
C35 C36 PX4 sing 496 n n 
C35 H68 PX4 sing 497 n n 
C35 H69 PX4 sing 498 n n 
C36 H70 PX4 sing 499 n n 
C36 H71 PX4 sing 500 n n 
C36 H72 PX4 sing 501 n n 
#
_atom_sites.entry_id                     6C1P 
_atom_sites.fract_transf_matrix[1][1]    0.007968 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 1301 1 PO4 PO4 . 
F 3 PX4 A 1 1302 2002 PX4 PX4 . 
G 3 PX4 A 1 1303 2004 PX4 PX4 . 
H 3 PX4 A 1 1304 2011 PX4 PX4 . 
I 3 PX4 B 1 2001 2001 PX4 PX4 . 
J 3 PX4 B 1 2002 2006 PX4 PX4 . 
K 3 PX4 B 1 2003 2008 PX4 PX4 . 
L 3 PX4 B 1 2004 2009 PX4 PX4 . 
M 3 PX4 B 1 2005 2010 PX4 PX4 . 
N 3 PX4 B 1 2006 2019 PX4 PX4 . 
O 4 1N7 C 1 1301 2012 1N7 1N7 . 
P 3 PX4 C 1 1302 2015 PX4 PX4 . 
Q 3 PX4 C 1 1303 2016 PX4 PX4 . 
R 2 PO4 D 1 1301 2 PO4 PO4 . 
S 3 PX4 D 1 1302 2005 PX4 PX4 . 
T 3 PX4 D 1 1303 2014 PX4 PX4 . 
U 3 PX4 D 1 1304 2017 PX4 PX4 . 
V 3 PX4 D 1 1305 2020 PX4 PX4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . H 3 22.812 -98.924 205.691 1 214.49 ? O1 PX4 1304 A 1 
HETATM 2 O O2 PX4 . . . H 3 23.42 -101.303 205.949 1 219.2 ? O2 PX4 1304 A 1 
HETATM 3 P P1 PX4 . . . H 3 22.256 -100.326 205.859 1 217.45 ? P1 PX4 1304 A 1 
HETATM 4 O O3 PX4 . . . H 3 21.407 -100.68 204.563 1 58.71 ? O3 PX4 1304 A 1 
HETATM 5 C C1 PX4 . . . H 3 20.034 -100.327 204.63 1 68.55 ? C1 PX4 1304 A 1 
HETATM 6 C C2 PX4 . . . H 3 19.424 -100.122 203.228 1 76.67 ? C2 PX4 1304 A 1 
HETATM 7 N N1 PX4 . . . H 3 18.876 -98.775 203.043 1 73.09 ? N1 PX4 1304 A 1 
HETATM 8 C C3 PX4 . . . H 3 17.852 -98.842 202.03 1 71.51 ? C3 PX4 1304 A 1 
HETATM 9 C C4 PX4 . . . H 3 18.313 -98.282 204.243 1 69.5 ? C4 PX4 1304 A 1 
HETATM 10 C C5 PX4 . . . H 3 19.934 -97.866 202.577 1 78.06 ? C5 PX4 1304 A 1 
HETATM 11 O O4 PX4 . . . H 3 21.36 -100.422 207.211 1 116.45 ? O4 PX4 1304 A 1 
HETATM 12 C C6 PX4 . . . H 3 21.523 -101.516 208.147 1 107.22 ? C6 PX4 1304 A 1 
HETATM 13 C C7 PX4 . . . H 3 20.472 -101.447 209.261 1 99.63 ? C7 PX4 1304 A 1 
HETATM 14 C C8 PX4 . . . H 3 21.171 -101.441 210.614 1 113.42 ? C8 PX4 1304 A 1 
HETATM 15 O O5 PX4 . . . H 3 20.283 -101.668 211.714 1 118.01 ? O5 PX4 1304 A 1 
HETATM 16 C C9 PX4 . . . H 3 20.753 -101.163 212.985 1 123.06 ? C9 PX4 1304 A 1 
HETATM 17 O O6 PX4 . . . H 3 21.905 -101.286 213.301 1 130.51 ? O6 PX4 1304 A 1 
HETATM 18 C C10 PX4 . . . H 3 19.781 -100.447 213.961 1 123.26 ? C10 PX4 1304 A 1 
HETATM 19 C C11 PX4 . . . H 3 20.344 -99.043 214.326 1 77.83 ? C11 PX4 1304 A 1 
HETATM 20 C C12 PX4 . . . H 3 19.211 -98.138 214.959 1 80.53 ? C12 PX4 1304 A 1 
HETATM 21 O O7 PX4 . . . H 3 19.713 -100.251 209.039 1 91.47 ? O7 PX4 1304 A 1 
HETATM 22 C C23 PX4 . . . H 3 18.33 -100.25 209.429 1 78.81 ? C23 PX4 1304 A 1 
HETATM 23 O O8 PX4 . . . H 3 17.933 -100.99 210.319 1 87.63 ? O8 PX4 1304 A 1 
HETATM 24 C C24 PX4 . . . H 3 17.356 -99.314 208.735 1 53.75 ? C24 PX4 1304 A 1 
HETATM 25 C C25 PX4 . . . H 3 16.151 -99.007 209.647 1 46.02 ? C25 PX4 1304 A 1 
HETATM 26 C C26 PX4 . . . H 3 16.539 -98.656 211.111 1 84.61 ? C26 PX4 1304 A 1 
HETATM 27 C C27 PX4 . . . H 3 15.701 -99.572 212.02 1 85.14 ? C27 PX4 1304 A 1 
HETATM 28 C C28 PX4 . . . H 3 16.447 -99.666 213.341 1 81.76 ? C28 PX4 1304 A 1 
HETATM 29 C C29 PX4 . . . H 3 16.156 -101.03 213.892 1 86.89 ? C29 PX4 1304 A 1 
HETATM 30 C C30 PX4 . . . H 3 15.935 -100.967 215.411 1 83.28 ? C30 PX4 1304 A 1 
HETATM 31 C C31 PX4 . . . H 3 14.985 -102.126 215.792 1 78.56 ? C31 PX4 1304 A 1 
HETATM 32 C C32 PX4 . . . H 3 15.211 -102.497 217.28 1 79.2 ? C32 PX4 1304 A 1 
HETATM 33 C C33 PX4 . . . H 3 14.804 -101.258 218.133 1 91.19 ? C33 PX4 1304 A 1 
HETATM 34 C C34 PX4 . . . H 3 13.407 -100.831 217.658 1 81.92 ? C34 PX4 1304 A 1 
HETATM 35 C C35 PX4 . . . H 3 12.427 -101.01 218.833 1 64.63 ? C35 PX4 1304 A 1 
HETATM 36 C C36 PX4 . . . H 3 12.913 -100.089 219.937 1 58.99 ? C36 PX4 1304 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#