data_6C1P
#
_model_server_result.job_id            '_RPIUIGcoo325Nkn7K8Hdw' 
_model_server_result.datetime_utc      '2024-10-27 12:23:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c1p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2001}' 
#
_entry.id    6C1P 
#
_exptl.entry_id    6C1P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C1P 
_cell.length_a            125.5 
_cell.length_b            125.552 
_cell.length_c            192.045 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C1P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 P N N 
? 3 Q N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 384 n n 
O1 H1P PX4 sing 385 n n 
O2 P1 PX4 doub 386 n n 
P1 O3 PX4 sing 387 n n 
P1 O4 PX4 sing 388 n n 
O3 C1 PX4 sing 389 n n 
C1 C2 PX4 sing 390 n n 
C1 H1 PX4 sing 391 n n 
C1 H2 PX4 sing 392 n n 
C2 N1 PX4 sing 393 n n 
C2 H3 PX4 sing 394 n n 
C2 H4 PX4 sing 395 n n 
N1 C3 PX4 sing 396 n n 
N1 C4 PX4 sing 397 n n 
N1 C5 PX4 sing 398 n n 
C3 H5 PX4 sing 399 n n 
C3 H6 PX4 sing 400 n n 
C3 H7 PX4 sing 401 n n 
C4 H8 PX4 sing 402 n n 
C4 H9 PX4 sing 403 n n 
C4 H10 PX4 sing 404 n n 
C5 H11 PX4 sing 405 n n 
C5 H12 PX4 sing 406 n n 
C5 H13 PX4 sing 407 n n 
O4 C6 PX4 sing 408 n n 
C6 C7 PX4 sing 409 n n 
C6 H14 PX4 sing 410 n n 
C6 H15 PX4 sing 411 n n 
C7 C8 PX4 sing 412 n n 
C7 O7 PX4 sing 413 n n 
C7 H16 PX4 sing 414 n n 
C8 O5 PX4 sing 415 n n 
C8 H17 PX4 sing 416 n n 
C8 H18 PX4 sing 417 n n 
O5 C9 PX4 sing 418 n n 
C9 O6 PX4 doub 419 n n 
C9 C10 PX4 sing 420 n n 
C10 C11 PX4 sing 421 n n 
C10 H19 PX4 sing 422 n n 
C10 H20 PX4 sing 423 n n 
C11 C12 PX4 sing 424 n n 
C11 H21 PX4 sing 425 n n 
C11 H22 PX4 sing 426 n n 
C12 C13 PX4 sing 427 n n 
C12 H23 PX4 sing 428 n n 
C12 H24 PX4 sing 429 n n 
C13 C14 PX4 sing 430 n n 
C13 H25 PX4 sing 431 n n 
C13 H26 PX4 sing 432 n n 
C14 C15 PX4 sing 433 n n 
C14 H27 PX4 sing 434 n n 
C14 H28 PX4 sing 435 n n 
C15 C16 PX4 sing 436 n n 
C15 H29 PX4 sing 437 n n 
C15 H30 PX4 sing 438 n n 
C16 C17 PX4 sing 439 n n 
C16 H31 PX4 sing 440 n n 
C16 H32 PX4 sing 441 n n 
C17 C18 PX4 sing 442 n n 
C17 H33 PX4 sing 443 n n 
C17 H34 PX4 sing 444 n n 
C18 C19 PX4 sing 445 n n 
C18 H35 PX4 sing 446 n n 
C18 H36 PX4 sing 447 n n 
C19 C20 PX4 sing 448 n n 
C19 H37 PX4 sing 449 n n 
C19 H38 PX4 sing 450 n n 
C20 C21 PX4 sing 451 n n 
C20 H39 PX4 sing 452 n n 
C20 H40 PX4 sing 453 n n 
C21 C22 PX4 sing 454 n n 
C21 H41 PX4 sing 455 n n 
C21 H42 PX4 sing 456 n n 
C22 H43 PX4 sing 457 n n 
C22 H44 PX4 sing 458 n n 
C22 H45 PX4 sing 459 n n 
O7 C23 PX4 sing 460 n n 
C23 O8 PX4 doub 461 n n 
C23 C24 PX4 sing 462 n n 
C24 C25 PX4 sing 463 n n 
C24 H46 PX4 sing 464 n n 
C24 H47 PX4 sing 465 n n 
C25 C26 PX4 sing 466 n n 
C25 H48 PX4 sing 467 n n 
C25 H49 PX4 sing 468 n n 
C26 C27 PX4 sing 469 n n 
C26 H50 PX4 sing 470 n n 
C26 H51 PX4 sing 471 n n 
C27 C28 PX4 sing 472 n n 
C27 H52 PX4 sing 473 n n 
C27 H53 PX4 sing 474 n n 
C28 C29 PX4 sing 475 n n 
C28 H54 PX4 sing 476 n n 
C28 H55 PX4 sing 477 n n 
C29 C30 PX4 sing 478 n n 
C29 H56 PX4 sing 479 n n 
C29 H57 PX4 sing 480 n n 
C30 C31 PX4 sing 481 n n 
C30 H58 PX4 sing 482 n n 
C30 H59 PX4 sing 483 n n 
C31 C32 PX4 sing 484 n n 
C31 H60 PX4 sing 485 n n 
C31 H61 PX4 sing 486 n n 
C32 C33 PX4 sing 487 n n 
C32 H62 PX4 sing 488 n n 
C32 H63 PX4 sing 489 n n 
C33 C34 PX4 sing 490 n n 
C33 H64 PX4 sing 491 n n 
C33 H65 PX4 sing 492 n n 
C34 C35 PX4 sing 493 n n 
C34 H66 PX4 sing 494 n n 
C34 H67 PX4 sing 495 n n 
C35 C36 PX4 sing 496 n n 
C35 H68 PX4 sing 497 n n 
C35 H69 PX4 sing 498 n n 
C36 H70 PX4 sing 499 n n 
C36 H71 PX4 sing 500 n n 
C36 H72 PX4 sing 501 n n 
#
_atom_sites.entry_id                     6C1P 
_atom_sites.fract_transf_matrix[1][1]    0.007968 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 1301 1 PO4 PO4 . 
F 3 PX4 A 1 1302 2002 PX4 PX4 . 
G 3 PX4 A 1 1303 2004 PX4 PX4 . 
H 3 PX4 A 1 1304 2011 PX4 PX4 . 
I 3 PX4 B 1 2001 2001 PX4 PX4 . 
J 3 PX4 B 1 2002 2006 PX4 PX4 . 
K 3 PX4 B 1 2003 2008 PX4 PX4 . 
L 3 PX4 B 1 2004 2009 PX4 PX4 . 
M 3 PX4 B 1 2005 2010 PX4 PX4 . 
N 3 PX4 B 1 2006 2019 PX4 PX4 . 
O 4 1N7 C 1 1301 2012 1N7 1N7 . 
P 3 PX4 C 1 1302 2015 PX4 PX4 . 
Q 3 PX4 C 1 1303 2016 PX4 PX4 . 
R 2 PO4 D 1 1301 2 PO4 PO4 . 
S 3 PX4 D 1 1302 2005 PX4 PX4 . 
T 3 PX4 D 1 1303 2014 PX4 PX4 . 
U 3 PX4 D 1 1304 2017 PX4 PX4 . 
V 3 PX4 D 1 1305 2020 PX4 PX4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . I 3 -8.144 -117.387 202.557 1 157.82 ? O1 PX4 2001 B 1 
HETATM 2 O O2 PX4 . . . I 3 -6.621 -115.43 202.647 1 153.49 ? O2 PX4 2001 B 1 
HETATM 3 P P1 PX4 . . . I 3 -6.913 -116.809 203.214 1 155.03 ? P1 PX4 2001 B 1 
HETATM 4 O O3 PX4 . . . I 3 -5.663 -117.736 202.93 1 119 ? O3 PX4 2001 B 1 
HETATM 5 C C1 PX4 . . . I 3 -5.652 -119.075 203.396 1 120.39 ? C1 PX4 2001 B 1 
HETATM 6 C C2 PX4 . . . I 3 -6.146 -120.059 202.313 1 120.39 ? C2 PX4 2001 B 1 
HETATM 7 N N1 PX4 . . . I 3 -6.908 -121.144 202.944 1 122.14 ? N1 PX4 2001 B 1 
HETATM 8 C C3 PX4 . . . I 3 -7.272 -122.125 201.948 1 121.86 ? C3 PX4 2001 B 1 
HETATM 9 C C4 PX4 . . . I 3 -6.159 -121.765 203.973 1 120.07 ? C4 PX4 2001 B 1 
HETATM 10 C C5 PX4 . . . I 3 -8.125 -120.587 203.549 1 124.93 ? C5 PX4 2001 B 1 
HETATM 11 O O4 PX4 . . . I 3 -7.148 -116.626 204.787 1 79.53 ? O4 PX4 2001 B 1 
HETATM 12 C C6 PX4 . . . I 3 -7.823 -117.596 205.622 1 87.84 ? C6 PX4 2001 B 1 
HETATM 13 C C7 PX4 . . . I 3 -8.195 -116.96 206.972 1 84.88 ? C7 PX4 2001 B 1 
HETATM 14 C C8 PX4 . . . I 3 -8.867 -117.976 207.874 1 98.6 ? C8 PX4 2001 B 1 
HETATM 15 O O5 PX4 . . . I 3 -9.794 -117.322 208.738 1 110.53 ? O5 PX4 2001 B 1 
HETATM 16 C C9 PX4 . . . I 3 -9.224 -116.838 209.978 1 120.18 ? C9 PX4 2001 B 1 
HETATM 17 O O6 PX4 . . . I 3 -8.041 -116.634 210.065 1 126.26 ? O6 PX4 2001 B 1 
HETATM 18 C C10 PX4 . . . I 3 -10.104 -116.574 211.232 1 132.48 ? C10 PX4 2001 B 1 
HETATM 19 C C11 PX4 . . . I 3 -9.545 -115.313 211.963 1 85.01 ? C11 PX4 2001 B 1 
HETATM 20 C C12 PX4 . . . I 3 -8.427 -115.634 213.028 1 94.04 ? C12 PX4 2001 B 1 
HETATM 21 O O7 PX4 . . . I 3 -7.014 -116.475 207.61 1 69.13 ? O7 PX4 2001 B 1 
HETATM 22 C C23 PX4 . . . I 3 -6.707 -115.095 207.395 1 64.56 ? C23 PX4 2001 B 1 
HETATM 23 O O8 PX4 . . . I 3 -6.186 -114.755 206.356 1 73.26 ? O8 PX4 2001 B 1 
HETATM 24 C C24 PX4 . . . I 3 -6.979 -114.02 208.432 1 65.96 ? C24 PX4 2001 B 1 
HETATM 25 C C25 PX4 . . . I 3 -6.025 -112.835 208.175 1 63.31 ? C25 PX4 2001 B 1 
HETATM 26 C C26 PX4 . . . I 3 -6.383 -111.638 209.12 1 68.19 ? C26 PX4 2001 B 1 
HETATM 27 C C27 PX4 . . . I 3 -5.757 -111.873 210.525 1 61.96 ? C27 PX4 2001 B 1 
HETATM 28 C C28 PX4 . . . I 3 -6.807 -111.93 211.649 1 61.16 ? C28 PX4 2001 B 1 
HETATM 29 C C29 PX4 . . . I 3 -6.794 -110.614 212.397 1 64.56 ? C29 PX4 2001 B 1 
HETATM 30 C C30 PX4 . . . I 3 -8.008 -110.57 213.345 1 75.56 ? C30 PX4 2001 B 1 
HETATM 31 C C31 PX4 . . . I 3 -7.826 -111.618 214.465 1 74.25 ? C31 PX4 2001 B 1 
HETATM 32 C C32 PX4 . . . I 3 -8.596 -111.146 215.725 1 60.91 ? C32 PX4 2001 B 1 
HETATM 33 C C33 PX4 . . . I 3 -7.575 -110.607 216.773 1 93.46 ? C33 PX4 2001 B 1 
HETATM 34 C C34 PX4 . . . I 3 -7.259 -109.145 216.437 1 96.73 ? C34 PX4 2001 B 1 
HETATM 35 C C35 PX4 . . . I 3 -8.043 -108.246 217.42 1 92.36 ? C35 PX4 2001 B 1 
HETATM 36 C C36 PX4 . . . I 3 -7.503 -108.484 218.822 1 91.27 ? C36 PX4 2001 B 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#