data_6C1P # _model_server_result.job_id l2WN97HXby71zfj-38G2Ag _model_server_result.datetime_utc '2024-11-27 06:15:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2002}' # _entry.id 6C1P # _exptl.entry_id 6C1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C1P _cell.length_a 125.5 _cell.length_b 125.552 _cell.length_c 192.045 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 384 n n O1 H1P PX4 sing 385 n n O2 P1 PX4 doub 386 n n P1 O3 PX4 sing 387 n n P1 O4 PX4 sing 388 n n O3 C1 PX4 sing 389 n n C1 C2 PX4 sing 390 n n C1 H1 PX4 sing 391 n n C1 H2 PX4 sing 392 n n C2 N1 PX4 sing 393 n n C2 H3 PX4 sing 394 n n C2 H4 PX4 sing 395 n n N1 C3 PX4 sing 396 n n N1 C4 PX4 sing 397 n n N1 C5 PX4 sing 398 n n C3 H5 PX4 sing 399 n n C3 H6 PX4 sing 400 n n C3 H7 PX4 sing 401 n n C4 H8 PX4 sing 402 n n C4 H9 PX4 sing 403 n n C4 H10 PX4 sing 404 n n C5 H11 PX4 sing 405 n n C5 H12 PX4 sing 406 n n C5 H13 PX4 sing 407 n n O4 C6 PX4 sing 408 n n C6 C7 PX4 sing 409 n n C6 H14 PX4 sing 410 n n C6 H15 PX4 sing 411 n n C7 C8 PX4 sing 412 n n C7 O7 PX4 sing 413 n n C7 H16 PX4 sing 414 n n C8 O5 PX4 sing 415 n n C8 H17 PX4 sing 416 n n C8 H18 PX4 sing 417 n n O5 C9 PX4 sing 418 n n C9 O6 PX4 doub 419 n n C9 C10 PX4 sing 420 n n C10 C11 PX4 sing 421 n n C10 H19 PX4 sing 422 n n C10 H20 PX4 sing 423 n n C11 C12 PX4 sing 424 n n C11 H21 PX4 sing 425 n n C11 H22 PX4 sing 426 n n C12 C13 PX4 sing 427 n n C12 H23 PX4 sing 428 n n C12 H24 PX4 sing 429 n n C13 C14 PX4 sing 430 n n C13 H25 PX4 sing 431 n n C13 H26 PX4 sing 432 n n C14 C15 PX4 sing 433 n n C14 H27 PX4 sing 434 n n C14 H28 PX4 sing 435 n n C15 C16 PX4 sing 436 n n C15 H29 PX4 sing 437 n n C15 H30 PX4 sing 438 n n C16 C17 PX4 sing 439 n n C16 H31 PX4 sing 440 n n C16 H32 PX4 sing 441 n n C17 C18 PX4 sing 442 n n C17 H33 PX4 sing 443 n n C17 H34 PX4 sing 444 n n C18 C19 PX4 sing 445 n n C18 H35 PX4 sing 446 n n C18 H36 PX4 sing 447 n n C19 C20 PX4 sing 448 n n C19 H37 PX4 sing 449 n n C19 H38 PX4 sing 450 n n C20 C21 PX4 sing 451 n n C20 H39 PX4 sing 452 n n C20 H40 PX4 sing 453 n n C21 C22 PX4 sing 454 n n C21 H41 PX4 sing 455 n n C21 H42 PX4 sing 456 n n C22 H43 PX4 sing 457 n n C22 H44 PX4 sing 458 n n C22 H45 PX4 sing 459 n n O7 C23 PX4 sing 460 n n C23 O8 PX4 doub 461 n n C23 C24 PX4 sing 462 n n C24 C25 PX4 sing 463 n n C24 H46 PX4 sing 464 n n C24 H47 PX4 sing 465 n n C25 C26 PX4 sing 466 n n C25 H48 PX4 sing 467 n n C25 H49 PX4 sing 468 n n C26 C27 PX4 sing 469 n n C26 H50 PX4 sing 470 n n C26 H51 PX4 sing 471 n n C27 C28 PX4 sing 472 n n C27 H52 PX4 sing 473 n n C27 H53 PX4 sing 474 n n C28 C29 PX4 sing 475 n n C28 H54 PX4 sing 476 n n C28 H55 PX4 sing 477 n n C29 C30 PX4 sing 478 n n C29 H56 PX4 sing 479 n n C29 H57 PX4 sing 480 n n C30 C31 PX4 sing 481 n n C30 H58 PX4 sing 482 n n C30 H59 PX4 sing 483 n n C31 C32 PX4 sing 484 n n C31 H60 PX4 sing 485 n n C31 H61 PX4 sing 486 n n C32 C33 PX4 sing 487 n n C32 H62 PX4 sing 488 n n C32 H63 PX4 sing 489 n n C33 C34 PX4 sing 490 n n C33 H64 PX4 sing 491 n n C33 H65 PX4 sing 492 n n C34 C35 PX4 sing 493 n n C34 H66 PX4 sing 494 n n C34 H67 PX4 sing 495 n n C35 C36 PX4 sing 496 n n C35 H68 PX4 sing 497 n n C35 H69 PX4 sing 498 n n C36 H70 PX4 sing 499 n n C36 H71 PX4 sing 500 n n C36 H72 PX4 sing 501 n n # _atom_sites.entry_id 6C1P _atom_sites.fract_transf_matrix[1][1] 0.007968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 1301 1 PO4 PO4 . F 3 PX4 A 1 1302 2002 PX4 PX4 . G 3 PX4 A 1 1303 2004 PX4 PX4 . H 3 PX4 A 1 1304 2011 PX4 PX4 . I 3 PX4 B 1 2001 2001 PX4 PX4 . J 3 PX4 B 1 2002 2006 PX4 PX4 . K 3 PX4 B 1 2003 2008 PX4 PX4 . L 3 PX4 B 1 2004 2009 PX4 PX4 . M 3 PX4 B 1 2005 2010 PX4 PX4 . N 3 PX4 B 1 2006 2019 PX4 PX4 . O 4 1N7 C 1 1301 2012 1N7 1N7 . P 3 PX4 C 1 1302 2015 PX4 PX4 . Q 3 PX4 C 1 1303 2016 PX4 PX4 . R 2 PO4 D 1 1301 2 PO4 PO4 . S 3 PX4 D 1 1302 2005 PX4 PX4 . T 3 PX4 D 1 1303 2014 PX4 PX4 . U 3 PX4 D 1 1304 2017 PX4 PX4 . V 3 PX4 D 1 1305 2020 PX4 PX4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . J 3 22.359 -106.305 230.254 1 278.33 ? O1 PX4 2002 B 1 HETATM 2 O O2 PX4 . . . J 3 21.823 -104.507 228.619 1 273.89 ? O2 PX4 2002 B 1 HETATM 3 P P1 PX4 . . . J 3 21.25 -105.62 229.488 1 275.55 ? P1 PX4 2002 B 1 HETATM 4 O O3 PX4 . . . J 3 20.191 -105.039 230.517 1 116.38 ? O3 PX4 2002 B 1 HETATM 5 C C1 PX4 . . . J 3 20.61 -104.626 231.813 1 121.48 ? C1 PX4 2002 B 1 HETATM 6 C C2 PX4 . . . J 3 20.081 -103.199 232.133 1 111.05 ? C2 PX4 2002 B 1 HETATM 7 N N1 PX4 . . . J 3 20.175 -102.833 233.555 1 99.71 ? N1 PX4 2002 B 1 HETATM 8 C C3 PX4 . . . J 3 21.51 -102.371 233.861 1 94.83 ? C3 PX4 2002 B 1 HETATM 9 C C4 PX4 . . . J 3 19.258 -101.798 233.852 1 93.51 ? C4 PX4 2002 B 1 HETATM 10 C C5 PX4 . . . J 3 19.832 -104.004 234.377 1 95.51 ? C5 PX4 2002 B 1 HETATM 11 O O4 PX4 . . . J 3 20.531 -106.688 228.538 1 106.98 ? O4 PX4 2002 B 1 HETATM 12 C C6 PX4 . . . J 3 20.768 -108.09 228.735 1 107.61 ? C6 PX4 2002 B 1 HETATM 13 C C7 PX4 . . . J 3 21.05 -108.75 227.38 1 108.55 ? C7 PX4 2002 B 1 HETATM 14 C C8 PX4 . . . J 3 21.376 -107.69 226.353 1 109.46 ? C8 PX4 2002 B 1 HETATM 15 O O5 PX4 . . . J 3 22.75 -107.335 226.425 1 115.16 ? O5 PX4 2002 B 1 HETATM 16 C C9 PX4 . . . J 3 23.497 -107.607 225.223 1 121.04 ? C9 PX4 2002 B 1 HETATM 17 O O6 PX4 . . . J 3 24.124 -106.711 224.71 1 127.11 ? O6 PX4 2002 B 1 HETATM 18 C C10 PX4 . . . J 3 23.453 -109.042 224.603 1 101.37 ? C10 PX4 2002 B 1 HETATM 19 C C11 PX4 . . . J 3 24.857 -109.657 224.334 1 79.43 ? C11 PX4 2002 B 1 HETATM 20 C C12 PX4 . . . J 3 25.584 -108.872 223.174 1 77.38 ? C12 PX4 2002 B 1 HETATM 21 C C13 PX4 . . . J 3 25.694 -109.695 221.87 1 69.43 ? C13 PX4 2002 B 1 HETATM 22 C C14 PX4 . . . J 3 25.942 -108.697 220.731 1 64.68 ? C14 PX4 2002 B 1 HETATM 23 O O7 PX4 . . . J 3 22.159 -109.645 227.482 1 108.75 ? O7 PX4 2002 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 460 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #