data_6C1R # _model_server_result.job_id fRYTmUsbO3q2XqX8_RMppw _model_server_result.datetime_utc '2024-11-27 06:07:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6C1R # _exptl.entry_id 6C1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 581.644 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description avacopan _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.08 _cell.angle_gamma 90 _cell.entry_id 6C1R _cell.length_a 58.411 _cell.length_b 52.608 _cell.length_c 83.865 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 195 B CYS 195 1_555 A SG CYS 274 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C TRP 229 B TRP 229 1_555 A N YCM 230 B YCM 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C YCM 230 B YCM 230 1_555 A N GLN 231 B GLN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ACE 1 L ACE 0 1_555 B N PHE 2 L PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C PHE 2 L PHE 1 1_555 B N ORN 3 L ORN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 B C ORN 3 L ORN 2 1_555 B N PRO 4 L PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 B NE ORN 3 L ORN 2 1_555 B C ARG 7 L ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C PRO 4 L PRO 3 1_555 B N ZAL 5 L ZAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C ZAL 5 L ZAL 4 1_555 B N TRP 6 L TRP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD2 ASP 168 B ASP 168 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc2 A O ASN 378 B ASN 378 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc3 A OD1 ASN 382 B ASN 382 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 F NA NA . B NA 504 1_555 N O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 F NA NA . B NA 504 1_555 N O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 F NA NA . B NA 504 1_555 N O HOH . B HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C33 H35 F4 N3 O2' _chem_comp.formula_weight 581.644 _chem_comp.id EFD _chem_comp.mon_nstd_flag . _chem_comp.name avacopan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R,3S)-2-[4-(cyclopentylamino)phenyl]-1-(2-fluoro-6-methylbenzene-1-carbonyl)-N-[4-methyl-3-(trifluoromethyl)phenyl]piperidine-3-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C03 EFD doub 89 n y C02 C01 EFD sing 90 n y C03 C04 EFD sing 91 n y C21 C01 EFD sing 92 n n C01 C06 EFD doub 93 n y C04 C05 EFD doub 94 n y C06 C05 EFD sing 95 n y C06 C07 EFD sing 96 n n C05 F22 EFD sing 97 n n C17 C16 EFD doub 98 n y C17 C18 EFD sing 99 n y C07 O08 EFD doub 100 n n C07 N09 EFD sing 101 n n C10 N09 EFD sing 102 n n C10 C12 EFD sing 103 n n C16 C15 EFD sing 104 n y N24 C18 EFD sing 105 n n N24 C25 EFD sing 106 n n N09 C11 EFD sing 107 n n C18 C19 EFD doub 108 n y C26 C25 EFD sing 109 n n C26 C27 EFD sing 110 n n C12 C13 EFD sing 111 n n C25 C29 EFD sing 112 n n C15 C11 EFD sing 113 n n C15 C20 EFD doub 114 n y C27 C28 EFD sing 115 n n C11 C14 EFD sing 116 n n C19 C20 EFD sing 117 n y C13 C14 EFD sing 118 n n C29 C28 EFD sing 119 n n C14 C23 EFD sing 120 n n C23 N31 EFD sing 121 n n C23 O30 EFD doub 122 n n N31 C32 EFD sing 123 n n C32 C37 EFD doub 124 n y C32 C33 EFD sing 125 n y C37 C36 EFD sing 126 n y C33 C34 EFD doub 127 n y C36 C35 EFD doub 128 n y C34 C35 EFD sing 129 n y C34 C39 EFD sing 130 n n F42 C39 EFD sing 131 n n C35 C38 EFD sing 132 n n C39 F41 EFD sing 133 n n C39 F40 EFD sing 134 n n C10 H1 EFD sing 135 n n C10 H2 EFD sing 136 n n C11 H3 EFD sing 137 n n C02 H4 EFD sing 138 n n C03 H5 EFD sing 139 n n C04 H6 EFD sing 140 n n C12 H7 EFD sing 141 n n C12 H8 EFD sing 142 n n C13 H9 EFD sing 143 n n C13 H10 EFD sing 144 n n C14 H11 EFD sing 145 n n C16 H12 EFD sing 146 n n C17 H13 EFD sing 147 n n C19 H14 EFD sing 148 n n C20 H15 EFD sing 149 n n C21 H16 EFD sing 150 n n C21 H17 EFD sing 151 n n C21 H18 EFD sing 152 n n N24 H19 EFD sing 153 n n C25 H20 EFD sing 154 n n C26 H21 EFD sing 155 n n C26 H22 EFD sing 156 n n C27 H23 EFD sing 157 n n C27 H24 EFD sing 158 n n C28 H25 EFD sing 159 n n C28 H26 EFD sing 160 n n C29 H27 EFD sing 161 n n C29 H28 EFD sing 162 n n N31 H29 EFD sing 163 n n C33 H30 EFD sing 164 n n C36 H31 EFD sing 165 n n C37 H32 EFD sing 166 n n C38 H33 EFD sing 167 n n C38 H34 EFD sing 168 n n C38 H35 EFD sing 169 n n # _atom_sites.entry_id 6C1R _atom_sites.fract_transf_matrix[1][1] 0.01712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004935 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EFD B 1 501 1 EFD AVA . D 4 MLI B 1 502 2 MLI MLI . E 4 MLI B 1 503 3 MLI MLI . F 5 NA B 1 504 1 NA NA . G 6 PGE B 1 505 1 PGE PGE . H 7 OLC B 1 506 1 OLC OLC . I 7 OLC B 1 507 2 OLC OLC . J 8 OLA B 1 508 1 OLA OLA . K 8 OLA B 1 509 2 OLA OLA . L 8 OLA B 1 510 3 OLA OLA . M 8 OLA B 1 511 4 OLA OLA . N 9 HOH B 1 601 46 HOH HOH . N 9 HOH B 2 602 43 HOH HOH . N 9 HOH B 3 603 5 HOH HOH . N 9 HOH B 4 604 28 HOH HOH . N 9 HOH B 5 605 27 HOH HOH . N 9 HOH B 6 606 10 HOH HOH . N 9 HOH B 7 607 45 HOH HOH . N 9 HOH B 8 608 3 HOH HOH . N 9 HOH B 9 609 19 HOH HOH . N 9 HOH B 10 610 25 HOH HOH . N 9 HOH B 11 611 35 HOH HOH . N 9 HOH B 12 612 36 HOH HOH . N 9 HOH B 13 613 14 HOH HOH . N 9 HOH B 14 614 1 HOH HOH . N 9 HOH B 15 615 13 HOH HOH . N 9 HOH B 16 616 4 HOH HOH . N 9 HOH B 17 617 38 HOH HOH . N 9 HOH B 18 618 2 HOH HOH . N 9 HOH B 19 619 16 HOH HOH . N 9 HOH B 20 620 37 HOH HOH . N 9 HOH B 21 621 6 HOH HOH . N 9 HOH B 22 622 31 HOH HOH . N 9 HOH B 23 623 32 HOH HOH . N 9 HOH B 24 624 26 HOH HOH . N 9 HOH B 25 625 9 HOH HOH . N 9 HOH B 26 626 18 HOH HOH . N 9 HOH B 27 627 44 HOH HOH . N 9 HOH B 28 628 12 HOH HOH . N 9 HOH B 29 629 30 HOH HOH . N 9 HOH B 30 630 21 HOH HOH . N 9 HOH B 31 631 20 HOH HOH . N 9 HOH B 32 632 29 HOH HOH . N 9 HOH B 33 633 11 HOH HOH . N 9 HOH B 34 634 23 HOH HOH . N 9 HOH B 35 635 24 HOH HOH . N 9 HOH B 36 636 34 HOH HOH . N 9 HOH B 37 637 7 HOH HOH . N 9 HOH B 38 638 39 HOH HOH . N 9 HOH B 39 639 40 HOH HOH . O 9 HOH L 1 101 8 HOH HOH . O 9 HOH L 2 102 15 HOH HOH . O 9 HOH L 3 103 33 HOH HOH . O 9 HOH L 4 104 17 HOH HOH . O 9 HOH L 5 105 22 HOH HOH . O 9 HOH L 6 106 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EFD . . . C 3 15.024 4.162 -48.197 1 34.77 ? C10 EFD 501 B 1 HETATM 2 C C11 EFD . . . C 3 13.277 3.758 -46.663 1 36.06 ? C11 EFD 501 B 1 HETATM 3 C C01 EFD . . . C 3 13.046 6.072 -50.778 1 38.2 ? C01 EFD 501 B 1 HETATM 4 C C02 EFD . . . C 3 13.511 6.839 -51.838 1 34.2 ? C02 EFD 501 B 1 HETATM 5 C C03 EFD . . . C 3 14.424 7.859 -51.611 1 35.91 ? C03 EFD 501 B 1 HETATM 6 C C04 EFD . . . C 3 14.87 8.108 -50.322 1 36.81 ? C04 EFD 501 B 1 HETATM 7 C C05 EFD . . . C 3 14.406 7.338 -49.262 1 39.39 ? C05 EFD 501 B 1 HETATM 8 C C06 EFD . . . C 3 13.497 6.311 -49.49 1 37.49 ? C06 EFD 501 B 1 HETATM 9 C C07 EFD . . . C 3 12.984 5.484 -48.325 1 37.9 ? C07 EFD 501 B 1 HETATM 10 O O08 EFD . . . C 3 11.877 5.735 -47.882 1 37.79 ? O08 EFD 501 B 1 HETATM 11 N N09 EFD . . . C 3 13.77 4.443 -47.736 1 35.32 ? N09 EFD 501 B 1 HETATM 12 C C12 EFD . . . C 3 15.927 4.107 -47.134 1 35.18 ? C12 EFD 501 B 1 HETATM 13 C C13 EFD . . . C 3 15.447 3.378 -46.071 1 38.1 ? C13 EFD 501 B 1 HETATM 14 C C14 EFD . . . C 3 14.24 3.882 -45.657 1 38.64 ? C14 EFD 501 B 1 HETATM 15 C C15 EFD . . . C 3 12.791 2.336 -46.997 1 34.66 ? C15 EFD 501 B 1 HETATM 16 C C16 EFD . . . C 3 11.947 2.15 -48.085 1 36.95 ? C16 EFD 501 B 1 HETATM 17 C C17 EFD . . . C 3 11.468 0.894 -48.423 1 37.72 ? C17 EFD 501 B 1 HETATM 18 C C18 EFD . . . C 3 11.805 -0.222 -47.676 1 37.42 ? C18 EFD 501 B 1 HETATM 19 C C19 EFD . . . C 3 12.64 -0.062 -46.578 1 35.1 ? C19 EFD 501 B 1 HETATM 20 C C20 EFD . . . C 3 13.125 1.205 -46.245 1 33.48 ? C20 EFD 501 B 1 HETATM 21 C C21 EFD . . . C 3 12.048 4.965 -51.023 1 35.62 ? C21 EFD 501 B 1 HETATM 22 F F22 EFD . . . C 3 14.843 7.59 -48.02 1 41.42 ? F22 EFD 501 B 1 HETATM 23 C C23 EFD . . . C 3 13.787 3.34 -44.308 1 37.77 ? C23 EFD 501 B 1 HETATM 24 N N24 EFD . . . C 3 11.282 -1.496 -48.058 1 34.51 ? N24 EFD 501 B 1 HETATM 25 C C25 EFD . . . C 3 11.452 -2.469 -47.031 1 38.1 ? C25 EFD 501 B 1 HETATM 26 C C26 EFD . . . C 3 11.238 -3.845 -47.633 1 40.79 ? C26 EFD 501 B 1 HETATM 27 C C27 EFD . . . C 3 10.153 -4.555 -46.85 1 38.57 ? C27 EFD 501 B 1 HETATM 28 C C28 EFD . . . C 3 9.835 -3.685 -45.655 1 40.67 ? C28 EFD 501 B 1 HETATM 29 C C29 EFD . . . C 3 10.4 -2.31 -45.953 1 39.33 ? C29 EFD 501 B 1 HETATM 30 O O30 EFD . . . C 3 14.593 2.828 -43.55 1 36.74 ? O30 EFD 501 B 1 HETATM 31 N N31 EFD . . . C 3 12.406 3.438 -43.977 1 37.07 ? N31 EFD 501 B 1 HETATM 32 C C32 EFD . . . C 3 11.791 2.987 -42.773 1 38.97 ? C32 EFD 501 B 1 HETATM 33 C C33 EFD . . . C 3 12.375 2.036 -41.947 1 38.55 ? C33 EFD 501 B 1 HETATM 34 C C34 EFD . . . C 3 11.74 1.616 -40.785 1 38.69 ? C34 EFD 501 B 1 HETATM 35 C C35 EFD . . . C 3 10.495 2.147 -40.453 1 36.61 ? C35 EFD 501 B 1 HETATM 36 C C36 EFD . . . C 3 9.907 3.093 -41.28 1 36.97 ? C36 EFD 501 B 1 HETATM 37 C C37 EFD . . . C 3 10.549 3.509 -42.436 1 38.34 ? C37 EFD 501 B 1 HETATM 38 C C38 EFD . . . C 3 9.766 1.718 -39.197 1 33.77 ? C38 EFD 501 B 1 HETATM 39 C C39 EFD . . . C 3 12.428 0.577 -39.912 1 42.02 ? C39 EFD 501 B 1 HETATM 40 F F40 EFD . . . C 3 12.68 1.085 -38.704 1 43.26 ? F40 EFD 501 B 1 HETATM 41 F F41 EFD . . . C 3 11.654 -0.505 -39.764 1 41.36 ? F41 EFD 501 B 1 HETATM 42 F F42 EFD . . . C 3 13.585 0.218 -40.483 1 45.14 ? F42 EFD 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #