data_6C1R # _model_server_result.job_id 2geQaBk4CL_jTv2pb5Fh0g _model_server_result.datetime_utc '2024-11-23 14:11:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 6C1R # _exptl.entry_id 6C1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.08 _cell.angle_gamma 90 _cell.entry_id 6C1R _cell.length_a 58.411 _cell.length_b 52.608 _cell.length_c 83.865 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 195 B CYS 195 1_555 A SG CYS 274 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C TRP 229 B TRP 229 1_555 A N YCM 230 B YCM 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C YCM 230 B YCM 230 1_555 A N GLN 231 B GLN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ACE 1 L ACE 0 1_555 B N PHE 2 L PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C PHE 2 L PHE 1 1_555 B N ORN 3 L ORN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 B C ORN 3 L ORN 2 1_555 B N PRO 4 L PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 B NE ORN 3 L ORN 2 1_555 B C ARG 7 L ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C PRO 4 L PRO 3 1_555 B N ZAL 5 L ZAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C ZAL 5 L ZAL 4 1_555 B N TRP 6 L TRP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD2 ASP 168 B ASP 168 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc2 A O ASN 378 B ASN 378 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc3 A OD1 ASN 382 B ASN 382 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 F NA NA . B NA 504 1_555 N O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 F NA NA . B NA 504 1_555 N O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 F NA NA . B NA 504 1_555 N O HOH . B HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 324 n n C1 C3 MLI sing 325 n n C1 H11 MLI sing 326 n n C1 H12 MLI sing 327 n n C2 O6 MLI doub 328 n n C2 O7 MLI sing 329 n n C3 O8 MLI doub 330 n n C3 O9 MLI sing 331 n n # _atom_sites.entry_id 6C1R _atom_sites.fract_transf_matrix[1][1] 0.01712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004935 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EFD B 1 501 1 EFD AVA . D 4 MLI B 1 502 2 MLI MLI . E 4 MLI B 1 503 3 MLI MLI . F 5 NA B 1 504 1 NA NA . G 6 PGE B 1 505 1 PGE PGE . H 7 OLC B 1 506 1 OLC OLC . I 7 OLC B 1 507 2 OLC OLC . J 8 OLA B 1 508 1 OLA OLA . K 8 OLA B 1 509 2 OLA OLA . L 8 OLA B 1 510 3 OLA OLA . M 8 OLA B 1 511 4 OLA OLA . N 9 HOH B 1 601 46 HOH HOH . N 9 HOH B 2 602 43 HOH HOH . N 9 HOH B 3 603 5 HOH HOH . N 9 HOH B 4 604 28 HOH HOH . N 9 HOH B 5 605 27 HOH HOH . N 9 HOH B 6 606 10 HOH HOH . N 9 HOH B 7 607 45 HOH HOH . N 9 HOH B 8 608 3 HOH HOH . N 9 HOH B 9 609 19 HOH HOH . N 9 HOH B 10 610 25 HOH HOH . N 9 HOH B 11 611 35 HOH HOH . N 9 HOH B 12 612 36 HOH HOH . N 9 HOH B 13 613 14 HOH HOH . N 9 HOH B 14 614 1 HOH HOH . N 9 HOH B 15 615 13 HOH HOH . N 9 HOH B 16 616 4 HOH HOH . N 9 HOH B 17 617 38 HOH HOH . N 9 HOH B 18 618 2 HOH HOH . N 9 HOH B 19 619 16 HOH HOH . N 9 HOH B 20 620 37 HOH HOH . N 9 HOH B 21 621 6 HOH HOH . N 9 HOH B 22 622 31 HOH HOH . N 9 HOH B 23 623 32 HOH HOH . N 9 HOH B 24 624 26 HOH HOH . N 9 HOH B 25 625 9 HOH HOH . N 9 HOH B 26 626 18 HOH HOH . N 9 HOH B 27 627 44 HOH HOH . N 9 HOH B 28 628 12 HOH HOH . N 9 HOH B 29 629 30 HOH HOH . N 9 HOH B 30 630 21 HOH HOH . N 9 HOH B 31 631 20 HOH HOH . N 9 HOH B 32 632 29 HOH HOH . N 9 HOH B 33 633 11 HOH HOH . N 9 HOH B 34 634 23 HOH HOH . N 9 HOH B 35 635 24 HOH HOH . N 9 HOH B 36 636 34 HOH HOH . N 9 HOH B 37 637 7 HOH HOH . N 9 HOH B 38 638 39 HOH HOH . N 9 HOH B 39 639 40 HOH HOH . O 9 HOH L 1 101 8 HOH HOH . O 9 HOH L 2 102 15 HOH HOH . O 9 HOH L 3 103 33 HOH HOH . O 9 HOH L 4 104 17 HOH HOH . O 9 HOH L 5 105 22 HOH HOH . O 9 HOH L 6 106 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 4 8.771 -0.184 -30.843 1 61.24 ? C1 MLI 503 B 1 HETATM 2 C C2 MLI . . . E 4 7.702 0.576 -30.068 1 51.01 ? C2 MLI 503 B 1 HETATM 3 C C3 MLI . . . E 4 9.869 -0.758 -29.971 1 70.12 ? C3 MLI 503 B 1 HETATM 4 O O6 MLI . . . E 4 7.13 1.539 -30.631 1 48.05 ? O6 MLI 503 B 1 HETATM 5 O O7 MLI . . . E 4 7.387 0.227 -28.909 1 37.83 ? O7 MLI 503 B 1 HETATM 6 O O8 MLI . . . E 4 10.506 -1.763 -30.361 1 68.53 ? O8 MLI 503 B 1 HETATM 7 O O9 MLI . . . E 4 10.126 -0.199 -28.888 1 71.1 ? O9 MLI 503 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #