data_6C1R # _model_server_result.job_id IuoHuD9nKzZrgy0s0qvujg _model_server_result.datetime_utc '2024-11-23 14:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":507}' # _entry.id 6C1R # _exptl.entry_id 6C1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.08 _cell.angle_gamma 90 _cell.entry_id 6C1R _cell.length_a 58.411 _cell.length_b 52.608 _cell.length_c 83.865 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 195 B CYS 195 1_555 A SG CYS 274 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A C TRP 229 B TRP 229 1_555 A N YCM 230 B YCM 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C YCM 230 B YCM 230 1_555 A N GLN 231 B GLN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ACE 1 L ACE 0 1_555 B N PHE 2 L PHE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C PHE 2 L PHE 1 1_555 B N ORN 3 L ORN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 B C ORN 3 L ORN 2 1_555 B N PRO 4 L PRO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 B NE ORN 3 L ORN 2 1_555 B C ARG 7 L ARG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C PRO 4 L PRO 3 1_555 B N ZAL 5 L ZAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C ZAL 5 L ZAL 4 1_555 B N TRP 6 L TRP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD2 ASP 168 B ASP 168 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc2 A O ASN 378 B ASN 378 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc3 A OD1 ASN 382 B ASN 382 1_555 F NA NA . B NA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 F NA NA . B NA 504 1_555 N O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc5 F NA NA . B NA 504 1_555 N O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 F NA NA . B NA 504 1_555 N O HOH . B HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 385 n n C10 C9 OLC doub 386 n n C10 C11 OLC sing 387 n n C9 C8 OLC sing 388 n n C17 C16 OLC sing 389 z n C11 C12 OLC sing 390 n n C8 C7 OLC sing 391 n n C24 C22 OLC sing 392 n n C24 O25 OLC sing 393 n n C16 C15 OLC sing 394 n n C12 C13 OLC sing 395 n n C7 C6 OLC sing 396 n n C15 C14 OLC sing 397 n n C13 C14 OLC sing 398 n n C6 C5 OLC sing 399 n n C5 C4 OLC sing 400 n n C4 C3 OLC sing 401 n n C3 C2 OLC sing 402 n n C2 C1 OLC sing 403 n n C21 C22 OLC sing 404 n n C21 O20 OLC sing 405 n n C1 O19 OLC doub 406 n n C1 O20 OLC sing 407 n n C22 O23 OLC sing 408 n n C18 H18 OLC sing 409 n n C18 H18A OLC sing 410 n n C18 H18B OLC sing 411 n n C10 H10 OLC sing 412 n n C9 H9 OLC sing 413 n n C17 H17 OLC sing 414 n n C17 H17A OLC sing 415 n n C11 H11 OLC sing 416 n n C11 H11A OLC sing 417 n n C8 H8 OLC sing 418 n n C8 H8A OLC sing 419 n n C24 H24 OLC sing 420 n n C24 H24A OLC sing 421 n n C16 H16 OLC sing 422 n n C16 H16A OLC sing 423 n n C12 H12 OLC sing 424 n n C12 H12A OLC sing 425 n n C7 H7 OLC sing 426 n n C7 H7A OLC sing 427 n n C15 H15 OLC sing 428 n n C15 H15A OLC sing 429 n n C13 H13 OLC sing 430 n n C13 H13A OLC sing 431 n n C6 H6 OLC sing 432 n n C6 H6A OLC sing 433 n n C14 H14 OLC sing 434 n n C14 H14A OLC sing 435 n n C5 H5 OLC sing 436 n n C5 H5A OLC sing 437 n n C4 H4 OLC sing 438 n n C4 H4A OLC sing 439 n n C3 H3 OLC sing 440 n n C3 H3A OLC sing 441 n n C2 H2 OLC sing 442 n n C2 H2A OLC sing 443 n n C21 H21 OLC sing 444 n n C21 H21A OLC sing 445 n n C22 H22 OLC sing 446 n n O25 HO25 OLC sing 447 n n O23 HO23 OLC sing 448 n n # _atom_sites.entry_id 6C1R _atom_sites.fract_transf_matrix[1][1] 0.01712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004935 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EFD B 1 501 1 EFD AVA . D 4 MLI B 1 502 2 MLI MLI . E 4 MLI B 1 503 3 MLI MLI . F 5 NA B 1 504 1 NA NA . G 6 PGE B 1 505 1 PGE PGE . H 7 OLC B 1 506 1 OLC OLC . I 7 OLC B 1 507 2 OLC OLC . J 8 OLA B 1 508 1 OLA OLA . K 8 OLA B 1 509 2 OLA OLA . L 8 OLA B 1 510 3 OLA OLA . M 8 OLA B 1 511 4 OLA OLA . N 9 HOH B 1 601 46 HOH HOH . N 9 HOH B 2 602 43 HOH HOH . N 9 HOH B 3 603 5 HOH HOH . N 9 HOH B 4 604 28 HOH HOH . N 9 HOH B 5 605 27 HOH HOH . N 9 HOH B 6 606 10 HOH HOH . N 9 HOH B 7 607 45 HOH HOH . N 9 HOH B 8 608 3 HOH HOH . N 9 HOH B 9 609 19 HOH HOH . N 9 HOH B 10 610 25 HOH HOH . N 9 HOH B 11 611 35 HOH HOH . N 9 HOH B 12 612 36 HOH HOH . N 9 HOH B 13 613 14 HOH HOH . N 9 HOH B 14 614 1 HOH HOH . N 9 HOH B 15 615 13 HOH HOH . N 9 HOH B 16 616 4 HOH HOH . N 9 HOH B 17 617 38 HOH HOH . N 9 HOH B 18 618 2 HOH HOH . N 9 HOH B 19 619 16 HOH HOH . N 9 HOH B 20 620 37 HOH HOH . N 9 HOH B 21 621 6 HOH HOH . N 9 HOH B 22 622 31 HOH HOH . N 9 HOH B 23 623 32 HOH HOH . N 9 HOH B 24 624 26 HOH HOH . N 9 HOH B 25 625 9 HOH HOH . N 9 HOH B 26 626 18 HOH HOH . N 9 HOH B 27 627 44 HOH HOH . N 9 HOH B 28 628 12 HOH HOH . N 9 HOH B 29 629 30 HOH HOH . N 9 HOH B 30 630 21 HOH HOH . N 9 HOH B 31 631 20 HOH HOH . N 9 HOH B 32 632 29 HOH HOH . N 9 HOH B 33 633 11 HOH HOH . N 9 HOH B 34 634 23 HOH HOH . N 9 HOH B 35 635 24 HOH HOH . N 9 HOH B 36 636 34 HOH HOH . N 9 HOH B 37 637 7 HOH HOH . N 9 HOH B 38 638 39 HOH HOH . N 9 HOH B 39 639 40 HOH HOH . O 9 HOH L 1 101 8 HOH HOH . O 9 HOH L 2 102 15 HOH HOH . O 9 HOH L 3 103 33 HOH HOH . O 9 HOH L 4 104 17 HOH HOH . O 9 HOH L 5 105 22 HOH HOH . O 9 HOH L 6 106 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . I 7 -7.474 19.336 -37.394 1 62.35 ? C18 OLC 507 B 1 HETATM 2 C C10 OLC . . . I 7 -6.47 14.306 -45.37 1 62 ? C10 OLC 507 B 1 HETATM 3 C C9 OLC . . . I 7 -5.674 14.092 -46.435 1 61.36 ? C9 OLC 507 B 1 HETATM 4 C C17 OLC . . . I 7 -7.739 17.964 -37.991 1 64.09 ? C17 OLC 507 B 1 HETATM 5 C C11 OLC . . . I 7 -5.865 15.031 -44.191 1 61.84 ? C11 OLC 507 B 1 HETATM 6 C C8 OLC . . . I 7 -4.245 14.586 -46.314 1 62.92 ? C8 OLC 507 B 1 HETATM 7 C C24 OLC . . . I 7 0.609 15.913 -57.506 1 77.9 ? C24 OLC 507 B 1 HETATM 8 C C16 OLC . . . I 7 -7.408 18.149 -39.461 1 65.49 ? C16 OLC 507 B 1 HETATM 9 C C12 OLC . . . I 7 -6.944 15.496 -43.218 1 61.31 ? C12 OLC 507 B 1 HETATM 10 C C7 OLC . . . I 7 -3.944 15.345 -47.603 1 63.86 ? C7 OLC 507 B 1 HETATM 11 C C15 OLC . . . I 7 -7.616 16.898 -40.297 1 66.51 ? C15 OLC 507 B 1 HETATM 12 C C13 OLC . . . I 7 -6.449 16.766 -42.542 1 62.87 ? C13 OLC 507 B 1 HETATM 13 C C6 OLC . . . I 7 -2.944 16.474 -47.361 1 64.27 ? C6 OLC 507 B 1 HETATM 14 C C14 OLC . . . I 7 -7.561 17.423 -41.73 1 66.58 ? C14 OLC 507 B 1 HETATM 15 C C5 OLC . . . I 7 -2.596 17.032 -48.747 1 62.56 ? C5 OLC 507 B 1 HETATM 16 C C4 OLC . . . I 7 -2.068 15.89 -49.605 1 59.83 ? C4 OLC 507 B 1 HETATM 17 C C3 OLC . . . I 7 -2.72 15.905 -50.992 1 63.4 ? C3 OLC 507 B 1 HETATM 18 C C2 OLC . . . I 7 -1.749 16.563 -51.956 1 70.63 ? C2 OLC 507 B 1 HETATM 19 C C21 OLC . . . I 7 -0.539 15.532 -55.332 1 78.32 ? C21 OLC 507 B 1 HETATM 20 C C1 OLC . . . I 7 -1.454 15.599 -53.064 1 76.36 ? C1 OLC 507 B 1 HETATM 21 C C22 OLC . . . I 7 0.777 15.888 -56.006 1 75.96 ? C22 OLC 507 B 1 HETATM 22 O O19 OLC . . . I 7 -2.149 14.609 -53.267 1 78.34 ? O19 OLC 507 B 1 HETATM 23 O O25 OLC . . . I 7 0.839 17.306 -57.874 1 77.86 ? O25 OLC 507 B 1 HETATM 24 O O23 OLC . . . I 7 1.018 17.229 -55.55 1 72.03 ? O23 OLC 507 B 1 HETATM 25 O O20 OLC . . . I 7 -0.337 15.833 -53.952 1 78.4 ? O20 OLC 507 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #