data_6C1T
#
_model_server_result.job_id            krWxnmHwEtt00uNArak2dg 
_model_server_result.datetime_utc      '2024-11-08 09:54:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c1t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":106}' 
#
_entry.id    6C1T 
#
_exptl.entry_id    6C1T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.25 
_cell.angle_gamma         90 
_cell.entry_id            6C1T 
_cell.length_a            71.473 
_cell.length_b            36.933 
_cell.length_c            104.076 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C1T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             AA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' DA 5 B DA 5 1_555 B P 5CM 6 B 5CM 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.584 ? 
covale ? covale2 B O3' 5CM 6 B 5CM 6 1_555 B P DA 7 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? 
hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 1 1_555 C N3 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 1 1_555 C O2 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 1 1_555 C N4 DC 12 C DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N3 DC 2 B DC 2 1_555 C N1 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N4 DC 2 B DC 2 1_555 C O6 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B O2 DC 2 B DC 2 1_555 C N2 DG 11 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N3 DC 3 B DC 3 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N4 DC 3 B DC 3 1_555 C O6 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O2 DC 3 B DC 3 1_555 C N2 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N3 DT 4 B DT 4 1_555 C N1 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B O4 DT 4 B DT 4 1_555 C N6 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N1 DA 5 B DA 5 1_555 C N3 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N6 DA 5 B DA 5 1_555 C O4 DT 8 C DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N3 5CM 6 B 5CM 6 1_555 C N1 DG 7 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B N4 5CM 6 B 5CM 6 1_555 C O6 DG 7 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 B O2 5CM 6 B 5CM 6 1_555 C N2 DG 7 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 B N1 DA 7 B DA 7 1_555 C N3 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 B N6 DA 7 B DA 7 1_555 C O4 DT 6 C DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 B N3 DC 8 B DC 8 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 B N4 DC 8 B DC 8 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 B O2 DC 8 B DC 8 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 B N3 DT 9 B DT 9 1_555 C N1 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 B O4 DT 9 B DT 9 1_555 C N6 DA 4 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 B N3 DC 10 B DC 10 1_555 C N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 B N4 DC 10 B DC 10 1_555 C O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 B O2 DC 10 B DC 10 1_555 C N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 B N3 DC 11 B DC 11 1_555 C N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 B N4 DC 11 B DC 11 1_555 C O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 B O2 DC 11 B DC 11 1_555 C N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 B N1 DG 12 B DG 12 1_555 C N3 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 B N2 DG 12 B DG 12 1_555 C O2 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 B O6 DG 12 B DG 12 1_555 C N4 DC 1 C DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 316 n n 
C1 C2 GOL sing 317 n n 
C1 H11 GOL sing 318 n n 
C1 H12 GOL sing 319 n n 
O1 HO1 GOL sing 320 n n 
C2 O2 GOL sing 321 n n 
C2 C3 GOL sing 322 n n 
C2 H2 GOL sing 323 n n 
O2 HO2 GOL sing 324 n n 
C3 O3 GOL sing 325 n n 
C3 H31 GOL sing 326 n n 
C3 H32 GOL sing 327 n n 
O3 HO3 GOL sing 328 n n 
#
_atom_sites.entry_id                     6C1T 
_atom_sites.fract_transf_matrix[1][1]    0.013991 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004613 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 SO4 A 1 301 1 SO4 SO4 . 
F 5 UNX A 1 302 1 UNX UNX . 
G 5 UNX A 1 303 2 UNX UNX . 
H 5 UNX A 1 304 3 UNX UNX . 
I 5 UNX A 1 305 5 UNX UNX . 
J 5 UNX A 1 306 6 UNX UNX . 
K 5 UNX A 1 307 7 UNX UNX . 
L 5 UNX A 1 308 8 UNX UNX . 
M 5 UNX A 1 309 14 UNX UNX . 
N 5 UNX A 1 310 16 UNX UNX . 
O 5 UNX A 1 311 17 UNX UNX . 
P 5 UNX A 1 312 18 UNX UNX . 
Q 5 UNX A 1 313 21 UNX UNX . 
R 5 UNX A 1 314 22 UNX UNX . 
S 5 UNX B 1 101 4 UNX UNX . 
T 5 UNX B 1 102 12 UNX UNX . 
U 5 UNX B 1 103 24 UNX UNX . 
V 5 UNX C 1 101 19 UNX UNX . 
W 5 UNX C 1 102 20 UNX UNX . 
X 5 UNX C 1 103 23 UNX UNX . 
Y 5 UNX C 1 104 25 UNX UNX . 
Z 5 UNX C 1 105 26 UNX UNX . 
AA 6 GOL C 1 106 1 GOL GOL . 
BA 5 UNX D 1 301 10 UNX UNX . 
CA 5 UNX D 1 302 11 UNX UNX . 
DA 5 UNX D 1 303 15 UNX UNX . 
EA 7 HOH A 1 401 18 HOH HOH . 
EA 7 HOH A 2 402 77 HOH HOH . 
EA 7 HOH A 3 403 8 HOH HOH . 
EA 7 HOH A 4 404 73 HOH HOH . 
EA 7 HOH A 5 405 75 HOH HOH . 
EA 7 HOH A 6 406 9 HOH HOH . 
EA 7 HOH A 7 407 46 HOH HOH . 
EA 7 HOH A 8 408 76 HOH HOH . 
EA 7 HOH A 9 409 17 HOH HOH . 
EA 7 HOH A 10 410 67 HOH HOH . 
EA 7 HOH A 11 411 74 HOH HOH . 
EA 7 HOH A 12 412 11 HOH HOH . 
EA 7 HOH A 13 413 39 HOH HOH . 
EA 7 HOH A 14 414 58 HOH HOH . 
EA 7 HOH A 15 415 79 HOH HOH . 
EA 7 HOH A 16 416 72 HOH HOH . 
FA 7 HOH B 1 201 35 HOH HOH . 
FA 7 HOH B 2 202 2 HOH HOH . 
FA 7 HOH B 3 203 5 HOH HOH . 
FA 7 HOH B 4 204 71 HOH HOH . 
FA 7 HOH B 5 205 16 HOH HOH . 
FA 7 HOH B 6 206 24 HOH HOH . 
FA 7 HOH B 7 207 69 HOH HOH . 
FA 7 HOH B 8 208 65 HOH HOH . 
FA 7 HOH B 9 209 70 HOH HOH . 
GA 7 HOH C 1 201 27 HOH HOH . 
GA 7 HOH C 2 202 57 HOH HOH . 
GA 7 HOH C 3 203 7 HOH HOH . 
GA 7 HOH C 4 204 26 HOH HOH . 
GA 7 HOH C 5 205 15 HOH HOH . 
GA 7 HOH C 6 206 66 HOH HOH . 
HA 7 HOH D 1 401 68 HOH HOH . 
HA 7 HOH D 2 402 41 HOH HOH . 
HA 7 HOH D 3 403 28 HOH HOH . 
HA 7 HOH D 4 404 13 HOH HOH . 
HA 7 HOH D 5 405 40 HOH HOH . 
HA 7 HOH D 6 406 43 HOH HOH . 
HA 7 HOH D 7 407 61 HOH HOH . 
HA 7 HOH D 8 408 60 HOH HOH . 
HA 7 HOH D 9 409 78 HOH HOH . 
HA 7 HOH D 10 410 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . AA 6 -2.291 50.916 124.908 1 47.82 ? C1 GOL 106 C 1 
HETATM 2 O O1 GOL . . . AA 6 -2.876 49.61 124.826 1 44.68 ? O1 GOL 106 C 1 
HETATM 3 C C2 GOL . . . AA 6 -1.676 51.317 123.56 1 46.44 ? C2 GOL 106 C 1 
HETATM 4 O O2 GOL . . . AA 6 -2.7 51.396 122.558 1 45.08 ? O2 GOL 106 C 1 
HETATM 5 C C3 GOL . . . AA 6 -0.606 50.312 123.094 1 49.94 ? C3 GOL 106 C 1 
HETATM 6 O O3 GOL . . . AA 6 0.471 50.156 124.055 1 51.66 ? O3 GOL 106 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#