data_6C2Q # _model_server_result.job_id 11LN89vBYGnMmdx3hRpzug _model_server_result.datetime_utc '2024-11-28 04:37:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6C2Q # _exptl.entry_id 6C2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C2Q _cell.length_a 81.107 _cell.length_b 81.107 _cell.length_c 208.519 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -40.5535 70.240722 -34.753167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 142 A GLY 120 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 A O ASN 205 A ASN 183 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc3 A OD1 ASP 208 A ASP 186 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc4 A OD2 ASP 208 A ASP 186 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc5 A OD1 ASN 209 A ASN 187 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 A OE1 GLN 275 A GLN 253 1_555 C CA CA . A CA 502 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc7 C CA CA . A CA 502 1_555 M O HOH . A HOH 634 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc8 C CA CA . A CA 502 1_555 M O HOH . A HOH 732 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc9 D NA NA . A NA 503 1_555 M O HOH . A HOH 606 12_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc10 D NA NA . A NA 503 1_555 M O HOH . A HOH 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc11 D NA NA . A NA 503 1_555 M O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc12 D NA NA . A NA 503 1_555 M O HOH . A HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc13 D NA NA . A NA 503 1_555 M O HOH . A HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 282 n n C1 C2 PEG sing 283 n n C1 H11 PEG sing 284 n n C1 H12 PEG sing 285 n n O1 HO1 PEG sing 286 n n C2 O2 PEG sing 287 n n C2 H21 PEG sing 288 n n C2 H22 PEG sing 289 n n O2 C3 PEG sing 290 n n C3 C4 PEG sing 291 n n C3 H31 PEG sing 292 n n C3 H32 PEG sing 293 n n C4 O4 PEG sing 294 n n C4 H41 PEG sing 295 n n C4 H42 PEG sing 296 n n O4 HO4 PEG sing 297 n n # _atom_sites.entry_id 6C2Q _atom_sites.fract_transf_matrix[1][1] 0.012329 _atom_sites.fract_transf_matrix[1][2] 0.007118 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EVM A 1 501 501 EVM YTU . C 3 CA A 1 502 502 CA CA . D 4 NA A 1 503 503 NA NA . E 5 CL A 1 504 504 CL CL . F 6 PEG A 1 505 1 PEG PEG . G 6 PEG A 1 506 2 PEG PEG . H 7 PGE A 1 507 1 PGE PGE . I 7 PGE A 1 508 2 PGE PGE . J 8 EDO A 1 509 1 EDO EDO . K 8 EDO A 1 510 2 EDO EDO . L 8 EDO A 1 511 3 EDO EDO . M 9 HOH A 1 601 113 HOH HOH . M 9 HOH A 2 602 120 HOH HOH . M 9 HOH A 3 603 90 HOH HOH . M 9 HOH A 4 604 141 HOH HOH . M 9 HOH A 5 605 25 HOH HOH . M 9 HOH A 6 606 143 HOH HOH . M 9 HOH A 7 607 99 HOH HOH . M 9 HOH A 8 608 43 HOH HOH . M 9 HOH A 9 609 63 HOH HOH . M 9 HOH A 10 610 49 HOH HOH . M 9 HOH A 11 611 57 HOH HOH . M 9 HOH A 12 612 79 HOH HOH . M 9 HOH A 13 613 148 HOH HOH . M 9 HOH A 14 614 75 HOH HOH . M 9 HOH A 15 615 95 HOH HOH . M 9 HOH A 16 616 26 HOH HOH . M 9 HOH A 17 617 50 HOH HOH . M 9 HOH A 18 618 1 HOH HOH . M 9 HOH A 19 619 105 HOH HOH . M 9 HOH A 20 620 78 HOH HOH . M 9 HOH A 21 621 35 HOH HOH . M 9 HOH A 22 622 24 HOH HOH . M 9 HOH A 23 623 18 HOH HOH . M 9 HOH A 24 624 144 HOH HOH . M 9 HOH A 25 625 5 HOH HOH . M 9 HOH A 26 626 32 HOH HOH . M 9 HOH A 27 627 139 HOH HOH . M 9 HOH A 28 628 151 HOH HOH . M 9 HOH A 29 629 36 HOH HOH . M 9 HOH A 30 630 82 HOH HOH . M 9 HOH A 31 631 19 HOH HOH . M 9 HOH A 32 632 111 HOH HOH . M 9 HOH A 33 633 16 HOH HOH . M 9 HOH A 34 634 152 HOH HOH . M 9 HOH A 35 635 33 HOH HOH . M 9 HOH A 36 636 11 HOH HOH . M 9 HOH A 37 637 118 HOH HOH . M 9 HOH A 38 638 12 HOH HOH . M 9 HOH A 39 639 129 HOH HOH . M 9 HOH A 40 640 52 HOH HOH . M 9 HOH A 41 641 34 HOH HOH . M 9 HOH A 42 642 102 HOH HOH . M 9 HOH A 43 643 137 HOH HOH . M 9 HOH A 44 644 45 HOH HOH . M 9 HOH A 45 645 101 HOH HOH . M 9 HOH A 46 646 2 HOH HOH . M 9 HOH A 47 647 46 HOH HOH . M 9 HOH A 48 648 77 HOH HOH . M 9 HOH A 49 649 7 HOH HOH . M 9 HOH A 50 650 93 HOH HOH . M 9 HOH A 51 651 31 HOH HOH . M 9 HOH A 52 652 27 HOH HOH . M 9 HOH A 53 653 107 HOH HOH . M 9 HOH A 54 654 6 HOH HOH . M 9 HOH A 55 655 9 HOH HOH . M 9 HOH A 56 656 73 HOH HOH . M 9 HOH A 57 657 117 HOH HOH . M 9 HOH A 58 658 17 HOH HOH . M 9 HOH A 59 659 108 HOH HOH . M 9 HOH A 60 660 81 HOH HOH . M 9 HOH A 61 661 91 HOH HOH . M 9 HOH A 62 662 88 HOH HOH . M 9 HOH A 63 663 29 HOH HOH . M 9 HOH A 64 664 100 HOH HOH . M 9 HOH A 65 665 41 HOH HOH . M 9 HOH A 66 666 119 HOH HOH . M 9 HOH A 67 667 47 HOH HOH . M 9 HOH A 68 668 138 HOH HOH . M 9 HOH A 69 669 66 HOH HOH . M 9 HOH A 70 670 10 HOH HOH . M 9 HOH A 71 671 15 HOH HOH . M 9 HOH A 72 672 28 HOH HOH . M 9 HOH A 73 673 4 HOH HOH . M 9 HOH A 74 674 133 HOH HOH . M 9 HOH A 75 675 114 HOH HOH . M 9 HOH A 76 676 67 HOH HOH . M 9 HOH A 77 677 104 HOH HOH . M 9 HOH A 78 678 20 HOH HOH . M 9 HOH A 79 679 22 HOH HOH . M 9 HOH A 80 680 48 HOH HOH . M 9 HOH A 81 681 3 HOH HOH . M 9 HOH A 82 682 69 HOH HOH . M 9 HOH A 83 683 37 HOH HOH . M 9 HOH A 84 684 85 HOH HOH . M 9 HOH A 85 685 42 HOH HOH . M 9 HOH A 86 686 103 HOH HOH . M 9 HOH A 87 687 92 HOH HOH . M 9 HOH A 88 688 87 HOH HOH . M 9 HOH A 89 689 94 HOH HOH . M 9 HOH A 90 690 13 HOH HOH . M 9 HOH A 91 691 72 HOH HOH . M 9 HOH A 92 692 83 HOH HOH . M 9 HOH A 93 693 53 HOH HOH . M 9 HOH A 94 694 140 HOH HOH . M 9 HOH A 95 695 68 HOH HOH . M 9 HOH A 96 696 84 HOH HOH . M 9 HOH A 97 697 98 HOH HOH . M 9 HOH A 98 698 97 HOH HOH . M 9 HOH A 99 699 60 HOH HOH . M 9 HOH A 100 700 23 HOH HOH . M 9 HOH A 101 701 121 HOH HOH . M 9 HOH A 102 702 61 HOH HOH . M 9 HOH A 103 703 38 HOH HOH . M 9 HOH A 104 704 30 HOH HOH . M 9 HOH A 105 705 71 HOH HOH . M 9 HOH A 106 706 116 HOH HOH . M 9 HOH A 107 707 44 HOH HOH . M 9 HOH A 108 708 146 HOH HOH . M 9 HOH A 109 709 64 HOH HOH . M 9 HOH A 110 710 80 HOH HOH . M 9 HOH A 111 711 59 HOH HOH . M 9 HOH A 112 712 112 HOH HOH . M 9 HOH A 113 713 39 HOH HOH . M 9 HOH A 114 714 40 HOH HOH . M 9 HOH A 115 715 130 HOH HOH . M 9 HOH A 116 716 125 HOH HOH . M 9 HOH A 117 717 96 HOH HOH . M 9 HOH A 118 718 86 HOH HOH . M 9 HOH A 119 719 54 HOH HOH . M 9 HOH A 120 720 109 HOH HOH . M 9 HOH A 121 721 76 HOH HOH . M 9 HOH A 122 722 51 HOH HOH . M 9 HOH A 123 723 62 HOH HOH . M 9 HOH A 124 724 14 HOH HOH . M 9 HOH A 125 725 55 HOH HOH . M 9 HOH A 126 726 106 HOH HOH . M 9 HOH A 127 727 122 HOH HOH . M 9 HOH A 128 728 70 HOH HOH . M 9 HOH A 129 729 58 HOH HOH . M 9 HOH A 130 730 21 HOH HOH . M 9 HOH A 131 731 145 HOH HOH . M 9 HOH A 132 732 131 HOH HOH . M 9 HOH A 133 733 8 HOH HOH . M 9 HOH A 134 734 147 HOH HOH . M 9 HOH A 135 735 135 HOH HOH . M 9 HOH A 136 736 110 HOH HOH . M 9 HOH A 137 737 142 HOH HOH . M 9 HOH A 138 738 115 HOH HOH . M 9 HOH A 139 739 126 HOH HOH . M 9 HOH A 140 740 127 HOH HOH . M 9 HOH A 141 741 150 HOH HOH . M 9 HOH A 142 742 149 HOH HOH . M 9 HOH A 143 743 136 HOH HOH . M 9 HOH A 144 744 128 HOH HOH . M 9 HOH A 145 745 134 HOH HOH . M 9 HOH A 146 746 132 HOH HOH . M 9 HOH A 147 747 74 HOH HOH . M 9 HOH A 148 748 123 HOH HOH . M 9 HOH A 149 749 56 HOH HOH . M 9 HOH A 150 750 89 HOH HOH . M 9 HOH A 151 751 65 HOH HOH . M 9 HOH A 152 752 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . F 6 -9.006 41.312 -19.421 1 37.8 ? C1 PEG 505 A 1 HETATM 2 O O1 PEG . . . F 6 -8.964 41.713 -18.087 1 37.51 ? O1 PEG 505 A 1 HETATM 3 C C2 PEG . . . F 6 -8.07 42.195 -20.212 1 39.59 ? C2 PEG 505 A 1 HETATM 4 O O2 PEG . . . F 6 -6.753 41.813 -19.981 1 50.41 ? O2 PEG 505 A 1 HETATM 5 C C3 PEG . . . F 6 -5.796 42.612 -20.637 1 46.89 ? C3 PEG 505 A 1 HETATM 6 C C4 PEG . . . F 6 -4.407 42.255 -20.082 1 48.87 ? C4 PEG 505 A 1 HETATM 7 O O4 PEG . . . F 6 -3.774 43.378 -19.514 1 53.86 ? O4 PEG 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #