data_6C2Y
#
_model_server_result.job_id            xcpYezrdZdQLhV9IwB4ROQ 
_model_server_result.datetime_utc      '2024-12-22 02:16:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c2y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    6C2Y 
#
_exptl.entry_id    6C2Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              536.515 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4R,5R,6S)-4-[4-fluoro-3-({[3-(methoxymethyl)-1,2,4-oxadiazol-5-yl]methyl}carbamoyl)phenyl]-N-(2H-indazol-5-yl)-6-methyl-2-oxohexahydropyrimidine-5-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C2Y 
_cell.length_a            60.557 
_cell.length_b            240.453 
_cell.length_c            212.796 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C2Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H25 F N8 O5' 
_chem_comp.formula_weight    536.515 
_chem_comp.id                EJS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4R,5R,6S)-4-[4-fluoro-3-({[3-(methoxymethyl)-1,2,4-oxadiazol-5-yl]methyl}carbamoyl)phenyl]-N-(2H-indazol-5-yl)-6-methyl-2-oxohexahydropyrimidine-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C28 EJS doub 83 n y 
C27 C25 EJS sing 84 n y 
F26 C25 EJS sing 85 n n 
C28 C10 EJS sing 86 n y 
C25 C12 EJS doub 87 n y 
C34 N35 EJS sing 88 n y 
C34 C33 EJS doub 89 n y 
N35 N36 EJS sing 90 n y 
O01 C02 EJS doub 91 n n 
C10 C09 EJS sing 92 n n 
C10 C11 EJS doub 93 n y 
C12 C11 EJS sing 94 n y 
C12 C13 EJS sing 95 n n 
C33 C32 EJS sing 96 n y 
C33 C37 EJS sing 97 n y 
O24 C13 EJS doub 98 n n 
C09 N08 EJS sing 99 n n 
C09 C03 EJS sing 100 n n 
N36 C37 EJS doub 101 n y 
C32 C31 EJS doub 102 n y 
C02 C03 EJS sing 103 n n 
C02 N30 EJS sing 104 n n 
C37 C38 EJS sing 105 n y 
C13 N14 EJS sing 106 n n 
N08 C07 EJS sing 107 n n 
C03 C04 EJS sing 108 n n 
C31 N30 EJS sing 109 n n 
C31 C39 EJS sing 110 n y 
C38 C39 EJS doub 111 n y 
N14 C15 EJS sing 112 n n 
C07 O29 EJS doub 113 n n 
C07 N06 EJS sing 114 n n 
C21 O20 EJS sing 115 n n 
C04 N06 EJS sing 116 n n 
C04 C05 EJS sing 117 n n 
C15 C16 EJS sing 118 n n 
N17 C16 EJS doub 119 n y 
N17 C18 EJS sing 120 n y 
O20 C19 EJS sing 121 n n 
C16 O23 EJS sing 122 n y 
C19 C18 EJS sing 123 n n 
C18 N22 EJS doub 124 n y 
O23 N22 EJS sing 125 n y 
C03 H1 EJS sing 126 n n 
C04 H2 EJS sing 127 n n 
C05 H3 EJS sing 128 n n 
C05 H4 EJS sing 129 n n 
C05 H5 EJS sing 130 n n 
N06 H6 EJS sing 131 n n 
N08 H7 EJS sing 132 n n 
C09 H8 EJS sing 133 n n 
C11 H9 EJS sing 134 n n 
N14 H10 EJS sing 135 n n 
C15 H11 EJS sing 136 n n 
C15 H12 EJS sing 137 n n 
C19 H13 EJS sing 138 n n 
C19 H14 EJS sing 139 n n 
C21 H15 EJS sing 140 n n 
C21 H16 EJS sing 141 n n 
C21 H17 EJS sing 142 n n 
C27 H18 EJS sing 143 n n 
C28 H19 EJS sing 144 n n 
N30 H20 EJS sing 145 n n 
C32 H21 EJS sing 146 n n 
C34 H22 EJS sing 147 n n 
N35 H23 EJS sing 148 n n 
C38 H24 EJS sing 149 n n 
C39 H25 EJS sing 150 n n 
#
_atom_sites.entry_id                     6C2Y 
_atom_sites.fract_transf_matrix[1][1]    0.016513 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004159 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004699 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EJS A 1 701 1 EJS 142 . 
E 5 HOH A 1 801 27 HOH HOH . 
E 5 HOH A 2 802 22 HOH HOH . 
E 5 HOH A 3 803 32 HOH HOH . 
E 5 HOH A 4 804 25 HOH HOH . 
E 5 HOH A 5 805 41 HOH HOH . 
E 5 HOH A 6 806 29 HOH HOH . 
E 5 HOH A 7 807 23 HOH HOH . 
E 5 HOH A 8 808 21 HOH HOH . 
E 5 HOH A 9 809 31 HOH HOH . 
E 5 HOH A 10 810 28 HOH HOH . 
E 5 HOH A 11 811 2 HOH HOH . 
E 5 HOH A 12 812 36 HOH HOH . 
E 5 HOH A 13 813 30 HOH HOH . 
E 5 HOH A 14 814 37 HOH HOH . 
E 5 HOH A 15 815 33 HOH HOH . 
E 5 HOH A 16 816 40 HOH HOH . 
E 5 HOH A 17 817 42 HOH HOH . 
E 5 HOH A 18 818 20 HOH HOH . 
E 5 HOH A 19 819 35 HOH HOH . 
E 5 HOH A 20 820 39 HOH HOH . 
E 5 HOH A 21 821 38 HOH HOH . 
E 5 HOH A 22 822 26 HOH HOH . 
E 5 HOH A 23 823 34 HOH HOH . 
E 5 HOH A 24 824 24 HOH HOH . 
F 5 HOH B 1 401 10 HOH HOH . 
F 5 HOH B 2 402 5 HOH HOH . 
F 5 HOH B 3 403 4 HOH HOH . 
F 5 HOH B 4 404 18 HOH HOH . 
F 5 HOH B 5 405 3 HOH HOH . 
F 5 HOH B 6 406 19 HOH HOH . 
F 5 HOH B 7 407 7 HOH HOH . 
F 5 HOH B 8 408 1 HOH HOH . 
F 5 HOH B 9 409 12 HOH HOH . 
F 5 HOH B 10 410 9 HOH HOH . 
F 5 HOH B 11 411 14 HOH HOH . 
F 5 HOH B 12 412 6 HOH HOH . 
F 5 HOH B 13 413 8 HOH HOH . 
F 5 HOH B 14 414 15 HOH HOH . 
F 5 HOH B 15 415 11 HOH HOH . 
F 5 HOH B 16 416 17 HOH HOH . 
F 5 HOH B 17 417 16 HOH HOH . 
G 5 HOH G 1 101 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 EJS . . . D 4 -19.998 28.595 16.208 1 51.62 ? O01 EJS 701 A 1 
HETATM 2 C C02 EJS . . . D 4 -19.557 28.334 17.276 1 51.53 ? C02 EJS 701 A 1 
HETATM 3 C C03 EJS . . . D 4 -18.341 29.073 17.823 1 53.33 ? C03 EJS 701 A 1 
HETATM 4 C C04 EJS . . . D 4 -18.581 29.729 19.121 1 53.67 ? C04 EJS 701 A 1 
HETATM 5 C C05 EJS . . . D 4 -19.988 29.734 19.726 1 51.6 ? C05 EJS 701 A 1 
HETATM 6 N N06 EJS . . . D 4 -17.621 30.653 19.638 1 68.35 ? N06 EJS 701 A 1 
HETATM 7 C C07 EJS . . . D 4 -16.471 31.078 18.803 1 66.13 ? C07 EJS 701 A 1 
HETATM 8 N N08 EJS . . . D 4 -16.282 30.562 17.413 1 57.32 ? N08 EJS 701 A 1 
HETATM 9 C C09 EJS . . . D 4 -17.294 29.586 16.887 1 55.33 ? C09 EJS 701 A 1 
HETATM 10 C C10 EJS . . . D 4 -16.483 28.361 16.413 1 55.55 ? C10 EJS 701 A 1 
HETATM 11 C C11 EJS . . . D 4 -15.302 28.045 17.066 1 56.64 ? C11 EJS 701 A 1 
HETATM 12 C C12 EJS . . . D 4 -14.555 26.951 16.661 1 57.01 ? C12 EJS 701 A 1 
HETATM 13 C C13 EJS . . . D 4 -13.248 26.619 17.39 1 58.41 ? C13 EJS 701 A 1 
HETATM 14 N N14 EJS . . . D 4 -12.994 27.172 18.715 1 58.83 ? N14 EJS 701 A 1 
HETATM 15 C C15 EJS . . . D 4 -11.746 26.86 19.4 1 67.41 ? C15 EJS 701 A 1 
HETATM 16 C C16 EJS . . . D 4 -11.723 25.401 19.875 1 77.25 ? C16 EJS 701 A 1 
HETATM 17 N N17 EJS . . . D 4 -12.484 24.403 19.415 1 72.58 ? N17 EJS 701 A 1 
HETATM 18 C C18 EJS . . . D 4 -12.149 23.285 20.101 1 63.04 ? C18 EJS 701 A 1 
HETATM 19 C C19 EJS . . . D 4 -12.752 21.89 19.926 1 71.68 ? C19 EJS 701 A 1 
HETATM 20 O O20 EJS . . . D 4 -11.709 21.014 19.6 1 80.98 ? O20 EJS 701 A 1 
HETATM 21 C C21 EJS . . . D 4 -12.105 19.918 18.829 1 80.2 ? C21 EJS 701 A 1 
HETATM 22 N N22 EJS . . . D 4 -11.19 23.607 20.96 1 61.11 ? N22 EJS 701 A 1 
HETATM 23 O O23 EJS . . . D 4 -10.933 24.908 20.816 1 75.58 ? O23 EJS 701 A 1 
HETATM 24 O O24 EJS . . . D 4 -12.444 25.918 16.876 1 63.38 ? O24 EJS 701 A 1 
HETATM 25 C C25 EJS . . . D 4 -14.989 26.176 15.601 1 56.3 ? C25 EJS 701 A 1 
HETATM 26 F F26 EJS . . . D 4 -14.255 25.1 15.198 1 56.8 ? F26 EJS 701 A 1 
HETATM 27 C C27 EJS . . . D 4 -16.173 26.489 14.946 1 55.22 ? C27 EJS 701 A 1 
HETATM 28 C C28 EJS . . . D 4 -16.922 27.584 15.355 1 54.85 ? C28 EJS 701 A 1 
HETATM 29 O O29 EJS . . . D 4 -15.689 31.845 19.249 1 75.84 ? O29 EJS 701 A 1 
HETATM 30 N N30 EJS . . . D 4 -20.136 27.333 18.155 1 49.97 ? N30 EJS 701 A 1 
HETATM 31 C C31 EJS . . . D 4 -21.332 26.578 17.849 1 48.35 ? C31 EJS 701 A 1 
HETATM 32 C C32 EJS . . . D 4 -22.276 27.11 16.978 1 48.04 ? C32 EJS 701 A 1 
HETATM 33 C C33 EJS . . . D 4 -23.467 26.407 16.706 1 46.65 ? C33 EJS 701 A 1 
HETATM 34 C C34 EJS . . . D 4 -24.61 26.637 15.871 1 46.16 ? C34 EJS 701 A 1 
HETATM 35 N N35 EJS . . . D 4 -25.441 25.62 16.018 1 44.92 ? N35 EJS 701 A 1 
HETATM 36 N N36 EJS . . . D 4 -24.901 24.757 16.896 1 44.6 ? N36 EJS 701 A 1 
HETATM 37 C C37 EJS . . . D 4 -23.708 25.207 17.327 1 45.62 ? C37 EJS 701 A 1 
HETATM 38 C C38 EJS . . . D 4 -22.761 24.676 18.237 1 45.94 ? C38 EJS 701 A 1 
HETATM 39 C C39 EJS . . . D 4 -21.587 25.37 18.502 1 47.29 ? C39 EJS 701 A 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#