data_6C3P # _model_server_result.job_id CBRIb8pWiQ-hvuuJWdSNWg _model_server_result.datetime_utc '2024-11-22 22:46:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":2004}' # _entry.id 6C3P # _exptl.entry_id 6C3P _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C3P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 P N N ? 3 T N N ? 3 X N N ? 3 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 110 1_555 A SG CYS 148 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 B SG CYS 116 D CYS 110 1_555 B SG CYS 148 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 C SG CYS 116 B CYS 110 1_555 C SG CYS 148 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 D SG CYS 116 C CYS 110 1_555 D SG CYS 148 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 E SG CYS 6 E CYS 6 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 F SG CYS 6 H CYS 6 1_555 F SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 G SG CYS 6 G CYS 6 1_555 G SG CYS 26 G CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 H SG CYS 6 F CYS 6 1_555 H SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 E OG SER 720 E SER 720 1_555 N MG MG . E MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 E OE1 GLN 774 E GLN 774 1_555 N MG MG . E MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 M O3B ADP . E ADP 2001 1_555 O MG MG . E MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc4 N MG MG . E MG 2002 1_555 P O2B ATP . E ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc5 N MG MG . E MG 2002 1_555 P O3B ATP . E ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc6 N MG MG . E MG 2002 1_555 P O3A ATP . E ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc7 F OG SER 720 H SER 720 1_555 R MG MG . H MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc8 F OE1 GLN 774 H GLN 774 1_555 R MG MG . H MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc9 Q O3B ADP . H ADP 2001 1_555 S MG MG . H MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc10 R MG MG . H MG 2002 1_555 T O2B ATP . H ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc11 R MG MG . H MG 2002 1_555 T O3B ATP . H ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc12 R MG MG . H MG 2002 1_555 T O3A ATP . H ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc13 G OG SER 720 G SER 720 1_555 V MG MG . G MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc14 G OE1 GLN 774 G GLN 774 1_555 V MG MG . G MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc15 U O3B ADP . G ADP 2001 1_555 W MG MG . G MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc16 V MG MG . G MG 2002 1_555 X O3B ATP . G ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc17 V MG MG . G MG 2002 1_555 X O2B ATP . G ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc18 V MG MG . G MG 2002 1_555 X O3A ATP . G ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc19 H OG SER 720 F SER 720 1_555 Z MG MG . F MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc20 H OE1 GLN 774 F GLN 774 1_555 Z MG MG . F MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc21 Y O3B ADP . F ADP 2001 1_555 AA MG MG . F MG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc22 Z MG MG . F MG 2002 1_555 BA O3B ATP . F ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc23 Z MG MG . F MG 2002 1_555 BA O2B ATP . F ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc24 Z MG MG . F MG 2002 1_555 BA O3A ATP . F ATP 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6C3P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 501 1 ATP ATP . J 3 ATP A 1 502 4 ATP ATP . K 3 ATP D 1 501 3 ATP ATP . L 3 ATP C 1 501 2 ATP ATP . M 4 ADP E 1 2001 2001 ADP ADP . N 5 MG E 1 2002 2002 MG MG . O 5 MG E 1 2003 2003 MG MG . P 3 ATP E 1 2004 2004 ATP ATP . Q 4 ADP H 1 2001 2001 ADP ADP . R 5 MG H 1 2002 2002 MG MG . S 5 MG H 1 2003 2003 MG MG . T 3 ATP H 1 2004 2004 ATP ATP . U 4 ADP G 1 2001 2001 ADP ADP . V 5 MG G 1 2002 2002 MG MG . W 5 MG G 1 2003 2003 MG MG . X 3 ATP G 1 2004 2004 ATP ATP . Y 4 ADP F 1 2001 2001 ADP ADP . Z 5 MG F 1 2002 2002 MG MG . AA 5 MG F 1 2003 2003 MG MG . BA 3 ATP F 1 2004 2004 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . X 3 153.541 122.73 149.299 1 166.28 ? PG ATP 2004 G 1 HETATM 2 O O1G ATP . . . X 3 154.309 122.797 148.003 1 166.28 ? O1G ATP 2004 G 1 HETATM 3 O O2G ATP . . . X 3 152.769 123.967 149.673 1 166.28 ? O2G ATP 2004 G 1 HETATM 4 O O3G ATP . . . X 3 152.812 121.434 149.53 1 166.28 ? O3G ATP 2004 G 1 HETATM 5 P PB ATP . . . X 3 155.92 121.663 150.154 1 166.28 ? PB ATP 2004 G 1 HETATM 6 O O1B ATP . . . X 3 155.465 120.493 149.329 1 166.28 ? O1B ATP 2004 G 1 HETATM 7 O O2B ATP . . . X 3 157.095 122.445 149.67 1 166.28 ? O2B ATP 2004 G 1 HETATM 8 O O3B ATP . . . X 3 154.71 122.682 150.385 1 166.28 ? O3B ATP 2004 G 1 HETATM 9 P PA ATP . . . X 3 157.512 120.381 152.01 1 166.28 ? PA ATP 2004 G 1 HETATM 10 O O1A ATP . . . X 3 158.22 120.157 150.706 1 166.28 ? O1A ATP 2004 G 1 HETATM 11 O O2A ATP . . . X 3 158.234 121.055 153.149 1 166.28 ? O2A ATP 2004 G 1 HETATM 12 O O3A ATP . . . X 3 156.184 121.204 151.668 1 166.28 ? O3A ATP 2004 G 1 HETATM 13 O O5' ATP . . . X 3 156.881 118.989 152.526 1 166.28 ? O5' ATP 2004 G 1 HETATM 14 C C5' ATP . . . X 3 157.426 117.718 152.175 1 166.28 ? C5' ATP 2004 G 1 HETATM 15 C C4' ATP . . . X 3 156.867 116.644 153.104 1 166.28 ? C4' ATP 2004 G 1 HETATM 16 O O4' ATP . . . X 3 157.495 116.742 154.382 1 166.28 ? O4' ATP 2004 G 1 HETATM 17 C C3' ATP . . . X 3 155.367 116.789 153.32 1 166.28 ? C3' ATP 2004 G 1 HETATM 18 O O3' ATP . . . X 3 154.701 115.593 152.913 1 166.28 ? O3' ATP 2004 G 1 HETATM 19 C C2' ATP . . . X 3 155.161 116.991 154.807 1 166.28 ? C2' ATP 2004 G 1 HETATM 20 O O2' ATP . . . X 3 154.246 116.018 155.317 1 166.28 ? O2' ATP 2004 G 1 HETATM 21 C C1' ATP . . . X 3 156.531 116.806 155.434 1 166.28 ? C1' ATP 2004 G 1 HETATM 22 N N9 ATP . . . X 3 156.839 117.978 156.278 1 166.28 ? N9 ATP 2004 G 1 HETATM 23 C C8 ATP . . . X 3 156.666 119.262 155.92 1 166.28 ? C8 ATP 2004 G 1 HETATM 24 N N7 ATP . . . X 3 157.047 120.098 156.911 1 166.28 ? N7 ATP 2004 G 1 HETATM 25 C C5 ATP . . . X 3 157.469 119.339 157.931 1 166.28 ? C5 ATP 2004 G 1 HETATM 26 C C6 ATP . . . X 3 158.006 119.586 159.283 1 166.28 ? C6 ATP 2004 G 1 HETATM 27 N N6 ATP . . . X 3 158.161 120.847 159.743 1 166.28 ? N6 ATP 2004 G 1 HETATM 28 N N1 ATP . . . X 3 158.332 118.513 160.029 1 166.28 ? N1 ATP 2004 G 1 HETATM 29 C C2 ATP . . . X 3 158.176 117.26 159.574 1 166.28 ? C2 ATP 2004 G 1 HETATM 30 N N3 ATP . . . X 3 157.696 116.959 158.357 1 166.28 ? N3 ATP 2004 G 1 HETATM 31 C C4 ATP . . . X 3 157.33 117.942 157.509 1 166.28 ? C4 ATP 2004 G 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #