data_6C40 # _model_server_result.job_id DWqpr4aoJPRkrqnuxMSAKw _model_server_result.datetime_utc '2024-10-19 21:19:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 6C40 # _exptl.entry_id 6C40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 98.8 _cell.angle_beta 104.42 _cell.angle_gamma 100.33 _cell.entry_id 6C40 _cell.length_a 33.634 _cell.length_b 34.816 _cell.length_c 58.547 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 6.243113 -34.251677 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 39 B VAL 40 1_555 A N 0WZ 40 B 0WZ 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale2 A C 0WZ 40 B 0WZ 41 1_555 A N LYS 41 B LYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B C VAL 39 D VAL 40 1_555 B N 0WZ 40 D 0WZ 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.556 ? covale ? covale4 B C 0WZ 40 D 0WZ 41 1_555 B N LYS 41 D LYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? metalc ? metalc1 A OD2 ASP 8 B ASP 9 1_555 D CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc2 A OD2 ASP 19 B ASP 20 1_555 E CU CU . B CU 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A OD2 ASP 19 B ASP 20 1_555 H CU CU . D CU 202 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc4 A N1 0WZ 40 B 0WZ 41 1_555 C CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 A OH 0WZ 40 B 0WZ 41 1_555 C CU CU . B CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc6 A OH 0WZ 40 B 0WZ 41 1_555 F CU CU . B CU 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc7 A SG CYS 80 B CYS 81 1_555 D CU CU . B CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc8 C CU CU . B CU 201 1_555 B OH 0WZ 40 D 0WZ 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc9 E CU CU . B CU 203 1_565 B OD1 ASP 19 D ASP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc10 F CU CU . B CU 204 1_555 B N1 0WZ 40 D 0WZ 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc11 F CU CU . B CU 204 1_555 B OH 0WZ 40 D 0WZ 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc12 B OD2 ASP 8 D ASP 9 1_555 G CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc13 B OD1 ASP 19 D ASP 20 1_555 H CU CU . D CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc14 B SG CYS 80 D CYS 81 1_555 G CU CU . D CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc15 G CU CU . D CU 201 1_555 J O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6C40 _atom_sites.fract_transf_matrix[1][1] 0.029732 _atom_sites.fract_transf_matrix[1][2] 0.005417 _atom_sites.fract_transf_matrix[1][3] 0.008961 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029195 _atom_sites.fract_transf_matrix[2][3] 0.006191 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU B 1 201 201 CU CU . D 2 CU B 1 202 202 CU CU . E 2 CU B 1 203 204 CU CU . F 2 CU B 1 204 201 CU CU . G 2 CU D 1 201 202 CU CU . H 2 CU D 1 202 204 CU CU . I 3 HOH B 1 301 5 HOH HOH . I 3 HOH B 2 302 4 HOH HOH . I 3 HOH B 3 303 2 HOH HOH . I 3 HOH B 4 304 7 HOH HOH . I 3 HOH B 5 305 8 HOH HOH . I 3 HOH B 6 306 1 HOH HOH . J 3 HOH D 1 301 6 HOH HOH . J 3 HOH D 2 302 3 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 35.116 _atom_site.Cartn_y -4.097 _atom_site.Cartn_z -62.827 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 102.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #