data_6C4D # _model_server_result.job_id BIywBDMChBKspyFstIKopA _model_server_result.datetime_utc '2025-08-31 21:19:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1100}' # _entry.id 6C4D # _exptl.entry_id 6C4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.9 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-(2-benzyl-3-chloro-7-oxo-2,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridin-6-yl)-5-methyl-4-oxo-2,3,4,5-tetrahydro-1,5-benzoxazepine-8-carbonitrile _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.08 _cell.angle_gamma 90 _cell.entry_id 6C4D _cell.length_a 45.768 _cell.length_b 138.133 _cell.length_c 95.933 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C24 H20 Cl N5 O3' _chem_comp.formula_weight 461.9 _chem_comp.id EJP _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-(2-benzyl-3-chloro-7-oxo-2,4,5,7-tetrahydro-6H-pyrazolo[3,4-c]pyridin-6-yl)-5-methyl-4-oxo-2,3,4,5-tetrahydro-1,5-benzoxazepine-8-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C2 EJP doub 83 n y C4 C7 EJP sing 84 n y C2 C3 EJP sing 85 n y C7 C12 EJP doub 86 n y C3 C6 EJP doub 87 n y C12 C6 EJP sing 88 n y C12 C24 EJP sing 89 n n C24 N3 EJP sing 90 n n N2 N3 EJP sing 91 n y N2 C15 EJP doub 92 n y N3 C16 EJP sing 93 n y O1 C17 EJP doub 94 n n C15 C17 EJP sing 95 n n C15 C11 EJP sing 96 n y C16 CL1 EJP sing 97 n n C16 C11 EJP doub 98 n y C17 N5 EJP sing 99 n n N1 C1 EJP trip 100 n n C11 C19 EJP sing 101 n n C1 C10 EJP sing 102 n n N5 C20 EJP sing 103 n n N5 C22 EJP sing 104 n n C21 C22 EJP sing 105 n n C21 O3 EJP sing 106 n n C20 C19 EJP sing 107 n n C9 C10 EJP doub 108 n y C9 C14 EJP sing 109 n y C10 C5 EJP sing 110 n y C22 C18 EJP sing 111 n n O3 C14 EJP sing 112 n n C5 C8 EJP doub 113 n y C14 C13 EJP doub 114 n y C8 C13 EJP sing 115 n y C13 N4 EJP sing 116 n n C18 N4 EJP sing 117 n n C18 O2 EJP doub 118 n n N4 C23 EJP sing 119 n n C4 H1 EJP sing 120 n n C5 H2 EJP sing 121 n n C6 H3 EJP sing 122 n n C7 H4 EJP sing 123 n n C8 H5 EJP sing 124 n n C20 H6 EJP sing 125 n n C20 H7 EJP sing 126 n n C21 H8 EJP sing 127 n n C21 H9 EJP sing 128 n n C22 H10 EJP sing 129 n n C24 H11 EJP sing 130 n n C24 H12 EJP sing 131 n n C2 H13 EJP sing 132 n n C3 H14 EJP sing 133 n n C9 H15 EJP sing 134 n n C19 H16 EJP sing 135 n n C19 H17 EJP sing 136 n n C23 H18 EJP sing 137 n n C23 H19 EJP sing 138 n n C23 H20 EJP sing 139 n n # _atom_sites.entry_id 6C4D _atom_sites.fract_transf_matrix[1][1] 0.021849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002327 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EJP A 1 1100 1100 EJP LIG . F 2 EJP B 1 1100 1100 EJP LIG . G 2 EJP C 1 1100 1100 EJP LIG . H 2 EJP D 1 1100 1100 EJP LIG . I 3 HOH A 1 1201 42 HOH HOH . I 3 HOH A 2 1202 15 HOH HOH . I 3 HOH A 3 1203 46 HOH HOH . I 3 HOH A 4 1204 35 HOH HOH . I 3 HOH A 5 1205 41 HOH HOH . I 3 HOH A 6 1206 40 HOH HOH . I 3 HOH A 7 1207 47 HOH HOH . I 3 HOH A 8 1208 13 HOH HOH . I 3 HOH A 9 1209 17 HOH HOH . I 3 HOH A 10 1210 22 HOH HOH . I 3 HOH A 11 1211 23 HOH HOH . I 3 HOH A 12 1212 26 HOH HOH . I 3 HOH A 13 1213 43 HOH HOH . I 3 HOH A 14 1214 24 HOH HOH . J 3 HOH B 1 1201 3 HOH HOH . J 3 HOH B 2 1202 45 HOH HOH . J 3 HOH B 3 1203 34 HOH HOH . J 3 HOH B 4 1204 44 HOH HOH . J 3 HOH B 5 1205 32 HOH HOH . J 3 HOH B 6 1206 28 HOH HOH . J 3 HOH B 7 1207 21 HOH HOH . J 3 HOH B 8 1208 33 HOH HOH . J 3 HOH B 9 1209 49 HOH HOH . J 3 HOH B 10 1210 19 HOH HOH . J 3 HOH B 11 1211 48 HOH HOH . K 3 HOH C 1 1201 38 HOH HOH . K 3 HOH C 2 1202 39 HOH HOH . K 3 HOH C 3 1203 5 HOH HOH . K 3 HOH C 4 1204 14 HOH HOH . K 3 HOH C 5 1205 9 HOH HOH . K 3 HOH C 6 1206 18 HOH HOH . K 3 HOH C 7 1207 8 HOH HOH . K 3 HOH C 8 1208 36 HOH HOH . K 3 HOH C 9 1209 2 HOH HOH . K 3 HOH C 10 1210 37 HOH HOH . K 3 HOH C 11 1211 1 HOH HOH . K 3 HOH C 12 1212 52 HOH HOH . K 3 HOH C 13 1213 50 HOH HOH . L 3 HOH D 1 1201 4 HOH HOH . L 3 HOH D 2 1202 51 HOH HOH . L 3 HOH D 3 1203 6 HOH HOH . L 3 HOH D 4 1204 12 HOH HOH . L 3 HOH D 5 1205 25 HOH HOH . L 3 HOH D 6 1206 7 HOH HOH . L 3 HOH D 7 1207 31 HOH HOH . L 3 HOH D 8 1208 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EJP . . . H 2 8.83 45.822 50.092 1 71.62 ? N1 EJP 1100 D 1 HETATM 2 N N3 EJP . . . H 2 -1.379 39.828 47.612 1 69.23 ? N3 EJP 1100 D 1 HETATM 3 C C4 EJP . . . H 2 -1.521 40.389 43.099 1 68.29 ? C4 EJP 1100 D 1 HETATM 4 C C5 EJP . . . H 2 6.849 43.599 51.866 1 68.63 ? C5 EJP 1100 D 1 HETATM 5 C C6 EJP . . . H 2 -3.191 40.625 45.268 1 71.73 ? C6 EJP 1100 D 1 HETATM 6 C C7 EJP . . . H 2 -1.283 39.649 44.235 1 69.29 ? C7 EJP 1100 D 1 HETATM 7 C C8 EJP . . . H 2 5.744 43.016 52.44 1 69.55 ? C8 EJP 1100 D 1 HETATM 8 C C10 EJP . . . H 2 6.717 44.76 51.14 1 69.56 ? C10 EJP 1100 D 1 HETATM 9 C C13 EJP . . . H 2 4.491 43.576 52.305 1 70.96 ? C13 EJP 1100 D 1 HETATM 10 C C15 EJP . . . H 2 -0.01 41.039 48.661 1 67.03 ? C15 EJP 1100 D 1 HETATM 11 C C17 EJP . . . H 2 1.177 41.757 49.04 1 66.54 ? C17 EJP 1100 D 1 HETATM 12 C C20 EJP . . . H 2 -0.354 42.968 50.541 1 71.41 ? C20 EJP 1100 D 1 HETATM 13 C C21 EJP . . . H 2 2.189 44.652 50.631 1 68.4 ? C21 EJP 1100 D 1 HETATM 14 C C22 EJP . . . H 2 2.134 43.149 50.813 1 68.3 ? C22 EJP 1100 D 1 HETATM 15 C C24 EJP . . . H 2 -1.87 38.969 46.551 1 68.64 ? C24 EJP 1100 D 1 HETATM 16 C C1 EJP . . . H 2 7.878 45.346 50.559 1 70.33 ? C1 EJP 1100 D 1 HETATM 17 C C2 EJP . . . H 2 -2.593 41.25 43.045 1 70.4 ? C2 EJP 1100 D 1 HETATM 18 C C3 EJP . . . H 2 -3.428 41.367 44.132 1 71.4 ? C3 EJP 1100 D 1 HETATM 19 C C9 EJP . . . H 2 5.477 45.337 50.989 1 67.62 ? C9 EJP 1100 D 1 HETATM 20 C C11 EJP . . . H 2 -1.195 41.029 49.441 1 69.95 ? C11 EJP 1100 D 1 HETATM 21 C C12 EJP . . . H 2 -2.118 39.766 45.321 1 69.73 ? C12 EJP 1100 D 1 HETATM 22 C C14 EJP . . . H 2 4.38 44.739 51.571 1 69.94 ? C14 EJP 1100 D 1 HETATM 23 C C16 EJP . . . H 2 -2.057 40.233 48.725 1 71.4 ? C16 EJP 1100 D 1 HETATM 24 C C18 EJP . . . H 2 2.171 42.727 52.255 1 69.89 ? C18 EJP 1100 D 1 HETATM 25 C C19 EJP . . . H 2 -1.273 41.779 50.701 1 71.22 ? C19 EJP 1100 D 1 HETATM 26 C C23 EJP . . . H 2 3.486 42.665 54.302 1 70.58 ? C23 EJP 1100 D 1 HETATM 27 N N2 EJP . . . H 2 -0.127 40.304 47.549 1 65.56 ? N2 EJP 1100 D 1 HETATM 28 N N4 EJP . . . H 2 3.366 42.977 52.896 1 70.01 ? N4 EJP 1100 D 1 HETATM 29 N N5 EJP . . . H 2 0.982 42.59 50.125 1 67.89 ? N5 EJP 1100 D 1 HETATM 30 O O1 EJP . . . H 2 2.23 41.599 48.437 1 63.11 ? O1 EJP 1100 D 1 HETATM 31 O O2 EJP . . . H 2 1.215 42.196 52.804 1 70.43 ? O2 EJP 1100 D 1 HETATM 32 O O3 EJP . . . H 2 3.16 45.359 51.394 1 66.84 ? O3 EJP 1100 D 1 HETATM 33 CL CL1 EJP . . . H 2 -3.68 39.748 49.029 1 77.66 ? CL1 EJP 1100 D 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 391 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #