data_6C4M # _model_server_result.job_id p_WY71rWkE0ypTs75o6Nmw _model_server_result.datetime_utc '2024-10-10 13:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6C4M # _exptl.entry_id 6C4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C4M _cell.length_a 98.389 _cell.length_b 125.669 _cell.length_c 88.012 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 44.006 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 6C4M _atom_sites.fract_transf_matrix[1][1] 0.010164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP C 1 501 1 NAP NAP . C 3 HOH C 1 601 150 HOH HOH . C 3 HOH C 2 602 123 HOH HOH . C 3 HOH C 3 603 117 HOH HOH . C 3 HOH C 4 604 80 HOH HOH . C 3 HOH C 5 605 110 HOH HOH . C 3 HOH C 6 606 118 HOH HOH . C 3 HOH C 7 607 74 HOH HOH . C 3 HOH C 8 608 101 HOH HOH . C 3 HOH C 9 609 104 HOH HOH . C 3 HOH C 10 610 69 HOH HOH . C 3 HOH C 11 611 87 HOH HOH . C 3 HOH C 12 612 43 HOH HOH . C 3 HOH C 13 613 1 HOH HOH . C 3 HOH C 14 614 19 HOH HOH . C 3 HOH C 15 615 6 HOH HOH . C 3 HOH C 16 616 90 HOH HOH . C 3 HOH C 17 617 102 HOH HOH . C 3 HOH C 18 618 62 HOH HOH . C 3 HOH C 19 619 15 HOH HOH . C 3 HOH C 20 620 29 HOH HOH . C 3 HOH C 21 621 95 HOH HOH . C 3 HOH C 22 622 119 HOH HOH . C 3 HOH C 23 623 86 HOH HOH . C 3 HOH C 24 624 65 HOH HOH . C 3 HOH C 25 625 12 HOH HOH . C 3 HOH C 26 626 26 HOH HOH . C 3 HOH C 27 627 94 HOH HOH . C 3 HOH C 28 628 11 HOH HOH . C 3 HOH C 29 629 41 HOH HOH . C 3 HOH C 30 630 2 HOH HOH . C 3 HOH C 31 631 99 HOH HOH . C 3 HOH C 32 632 84 HOH HOH . C 3 HOH C 33 633 38 HOH HOH . C 3 HOH C 34 634 7 HOH HOH . C 3 HOH C 35 635 8 HOH HOH . C 3 HOH C 36 636 100 HOH HOH . C 3 HOH C 37 637 98 HOH HOH . C 3 HOH C 38 638 3 HOH HOH . C 3 HOH C 39 639 16 HOH HOH . C 3 HOH C 40 640 30 HOH HOH . C 3 HOH C 41 641 24 HOH HOH . C 3 HOH C 42 642 9 HOH HOH . C 3 HOH C 43 643 58 HOH HOH . C 3 HOH C 44 644 128 HOH HOH . C 3 HOH C 45 645 125 HOH HOH . C 3 HOH C 46 646 59 HOH HOH . C 3 HOH C 47 647 60 HOH HOH . C 3 HOH C 48 648 70 HOH HOH . C 3 HOH C 49 649 108 HOH HOH . C 3 HOH C 50 650 53 HOH HOH . C 3 HOH C 51 651 22 HOH HOH . C 3 HOH C 52 652 133 HOH HOH . C 3 HOH C 53 653 20 HOH HOH . C 3 HOH C 54 654 67 HOH HOH . C 3 HOH C 55 655 39 HOH HOH . C 3 HOH C 56 656 47 HOH HOH . C 3 HOH C 57 657 115 HOH HOH . C 3 HOH C 58 658 35 HOH HOH . C 3 HOH C 59 659 142 HOH HOH . C 3 HOH C 60 660 23 HOH HOH . C 3 HOH C 61 661 27 HOH HOH . C 3 HOH C 62 662 136 HOH HOH . C 3 HOH C 63 663 28 HOH HOH . C 3 HOH C 64 664 21 HOH HOH . C 3 HOH C 65 665 40 HOH HOH . C 3 HOH C 66 666 63 HOH HOH . C 3 HOH C 67 667 42 HOH HOH . C 3 HOH C 68 668 107 HOH HOH . C 3 HOH C 69 669 5 HOH HOH . C 3 HOH C 70 670 10 HOH HOH . C 3 HOH C 71 671 152 HOH HOH . C 3 HOH C 72 672 126 HOH HOH . C 3 HOH C 73 673 14 HOH HOH . C 3 HOH C 74 674 82 HOH HOH . C 3 HOH C 75 675 4 HOH HOH . C 3 HOH C 76 676 34 HOH HOH . C 3 HOH C 77 677 57 HOH HOH . C 3 HOH C 78 678 135 HOH HOH . C 3 HOH C 79 679 122 HOH HOH . C 3 HOH C 80 680 36 HOH HOH . C 3 HOH C 81 681 64 HOH HOH . C 3 HOH C 82 682 141 HOH HOH . C 3 HOH C 83 683 96 HOH HOH . C 3 HOH C 84 684 89 HOH HOH . C 3 HOH C 85 685 78 HOH HOH . C 3 HOH C 86 686 68 HOH HOH . C 3 HOH C 87 687 37 HOH HOH . C 3 HOH C 88 688 88 HOH HOH . C 3 HOH C 89 689 56 HOH HOH . C 3 HOH C 90 690 51 HOH HOH . C 3 HOH C 91 691 17 HOH HOH . C 3 HOH C 92 692 48 HOH HOH . C 3 HOH C 93 693 32 HOH HOH . C 3 HOH C 94 694 25 HOH HOH . C 3 HOH C 95 695 13 HOH HOH . C 3 HOH C 96 696 116 HOH HOH . C 3 HOH C 97 697 45 HOH HOH . C 3 HOH C 98 698 55 HOH HOH . C 3 HOH C 99 699 144 HOH HOH . C 3 HOH C 100 700 139 HOH HOH . C 3 HOH C 101 701 52 HOH HOH . C 3 HOH C 102 702 129 HOH HOH . C 3 HOH C 103 703 153 HOH HOH . C 3 HOH C 104 704 97 HOH HOH . C 3 HOH C 105 705 138 HOH HOH . C 3 HOH C 106 706 66 HOH HOH . C 3 HOH C 107 707 33 HOH HOH . C 3 HOH C 108 708 148 HOH HOH . C 3 HOH C 109 709 79 HOH HOH . C 3 HOH C 110 710 121 HOH HOH . C 3 HOH C 111 711 75 HOH HOH . C 3 HOH C 112 712 72 HOH HOH . C 3 HOH C 113 713 49 HOH HOH . C 3 HOH C 114 714 44 HOH HOH . C 3 HOH C 115 715 50 HOH HOH . C 3 HOH C 116 716 105 HOH HOH . C 3 HOH C 117 717 151 HOH HOH . C 3 HOH C 118 718 120 HOH HOH . C 3 HOH C 119 719 54 HOH HOH . C 3 HOH C 120 720 18 HOH HOH . C 3 HOH C 121 721 71 HOH HOH . C 3 HOH C 122 722 92 HOH HOH . C 3 HOH C 123 723 145 HOH HOH . C 3 HOH C 124 724 76 HOH HOH . C 3 HOH C 125 725 143 HOH HOH . C 3 HOH C 126 726 91 HOH HOH . C 3 HOH C 127 727 83 HOH HOH . C 3 HOH C 128 728 31 HOH HOH . C 3 HOH C 129 729 61 HOH HOH . C 3 HOH C 130 730 109 HOH HOH . C 3 HOH C 131 731 81 HOH HOH . C 3 HOH C 132 732 73 HOH HOH . C 3 HOH C 133 733 112 HOH HOH . C 3 HOH C 134 734 137 HOH HOH . C 3 HOH C 135 735 77 HOH HOH . C 3 HOH C 136 736 46 HOH HOH . C 3 HOH C 137 737 93 HOH HOH . C 3 HOH C 138 738 127 HOH HOH . C 3 HOH C 139 739 111 HOH HOH . C 3 HOH C 140 740 124 HOH HOH . C 3 HOH C 141 741 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 25.212 17.973 37.921 1 40.99 ? PA NAP 501 C 1 HETATM 2 O O1A NAP . . . B 2 25.064 19.413 37.619 1 47.08 ? O1A NAP 501 C 1 HETATM 3 O O2A NAP . . . B 2 23.854 17.307 38.267 1 49.63 ? O2A NAP 501 C 1 HETATM 4 O O5B NAP . . . B 2 26.263 17.835 39.177 1 36.38 ? O5B NAP 501 C 1 HETATM 5 C C5B NAP . . . B 2 27.648 18.051 38.826 1 36.76 ? C5B NAP 501 C 1 HETATM 6 C C4B NAP . . . B 2 28.488 17.828 40.098 1 39.24 ? C4B NAP 501 C 1 HETATM 7 O O4B NAP . . . B 2 27.972 18.85 41.153 1 37.63 ? O4B NAP 501 C 1 HETATM 8 C C3B NAP . . . B 2 28.312 16.656 40.593 1 37.8 ? C3B NAP 501 C 1 HETATM 9 O O3B NAP . . . B 2 29.551 16.149 41.183 1 34.87 ? O3B NAP 501 C 1 HETATM 10 C C2B NAP . . . B 2 27.218 16.851 41.806 1 35.36 ? C2B NAP 501 C 1 HETATM 11 O O2B NAP . . . B 2 27.397 15.802 42.82 1 38.28 ? O2B NAP 501 C 1 HETATM 12 C C1B NAP . . . B 2 27.472 17.998 42.325 1 37.53 ? C1B NAP 501 C 1 HETATM 13 N N9A NAP . . . B 2 26.186 18.599 42.682 1 36.71 ? N9A NAP 501 C 1 HETATM 14 C C8A NAP . . . B 2 25.002 18.757 42.068 1 35.35 ? C8A NAP 501 C 1 HETATM 15 N N7A NAP . . . B 2 24.22 19.375 42.965 1 35.54 ? N7A NAP 501 C 1 HETATM 16 C C5A NAP . . . B 2 24.945 19.581 44.109 1 37.87 ? C5A NAP 501 C 1 HETATM 17 C C6A NAP . . . B 2 24.545 20.188 45.273 1 39.24 ? C6A NAP 501 C 1 HETATM 18 N N6A NAP . . . B 2 23.303 20.793 45.756 1 39.44 ? N6A NAP 501 C 1 HETATM 19 N N1A NAP . . . B 2 25.417 20.296 46.292 1 40.16 ? N1A NAP 501 C 1 HETATM 20 C C2A NAP . . . B 2 26.699 19.814 46.161 1 39.74 ? C2A NAP 501 C 1 HETATM 21 N N3A NAP . . . B 2 27.09 19.212 45.001 1 39.37 ? N3A NAP 501 C 1 HETATM 22 C C4A NAP . . . B 2 26.189 19.103 43.96 1 37.37 ? C4A NAP 501 C 1 HETATM 23 O O3 NAP . . . B 2 25.84 17.239 36.575 1 47.03 ? O3 NAP 501 C 1 HETATM 24 P PN NAP . . . B 2 26.095 17.812 35.084 1 41.3 ? PN NAP 501 C 1 HETATM 25 O O1N NAP . . . B 2 27.317 17.136 34.64 1 42.54 ? O1N NAP 501 C 1 HETATM 26 O O2N NAP . . . B 2 24.842 17.407 34.27 1 39.81 ? O2N NAP 501 C 1 HETATM 27 O O5D NAP . . . B 2 26.227 19.471 34.961 1 43.31 ? O5D NAP 501 C 1 HETATM 28 C C5D NAP . . . B 2 27.527 20.118 34.942 1 43.1 ? C5D NAP 501 C 1 HETATM 29 C C4D NAP . . . B 2 27.259 21.629 34.793 1 41.94 ? C4D NAP 501 C 1 HETATM 30 O O4D NAP . . . B 2 26.531 21.911 33.4 1 37.8 ? O4D NAP 501 C 1 HETATM 31 C C3D NAP . . . B 2 26.453 22.13 35.706 1 44.95 ? C3D NAP 501 C 1 HETATM 32 O O3D NAP . . . B 2 26.836 23.585 35.837 1 47.24 ? O3D NAP 501 C 1 HETATM 33 C C2D NAP . . . B 2 25.039 22.113 35.114 1 47.8 ? C2D NAP 501 C 1 HETATM 34 O O2D NAP . . . B 2 24.355 23.168 35.604 1 45.56 ? O2D NAP 501 C 1 HETATM 35 C C1D NAP . . . B 2 25.332 22.375 33.624 1 44.57 ? C1D NAP 501 C 1 HETATM 36 N N1N NAP . . . B 2 24.394 21.724 32.677 1 44.62 ? N1N NAP 501 C 1 HETATM 37 C C2N NAP . . . B 2 24.584 20.464 32.228 1 41.43 ? C2N NAP 501 C 1 HETATM 38 C C3N NAP . . . B 2 23.667 19.92 31.3 1 45.94 ? C3N NAP 501 C 1 HETATM 39 C C7N NAP . . . B 2 23.842 18.482 30.766 1 43.32 ? C7N NAP 501 C 1 HETATM 40 O O7N NAP . . . B 2 23.435 18.167 29.719 1 49.85 ? O7N NAP 501 C 1 HETATM 41 N N7N NAP . . . B 2 24.529 17.544 31.613 1 38.15 ? N7N NAP 501 C 1 HETATM 42 C C4N NAP . . . B 2 22.596 20.651 30.869 1 48.05 ? C4N NAP 501 C 1 HETATM 43 C C5N NAP . . . B 2 22.411 21.9 31.324 1 50.45 ? C5N NAP 501 C 1 HETATM 44 C C6N NAP . . . B 2 23.321 22.453 32.232 1 48.8 ? C6N NAP 501 C 1 HETATM 45 P P2B NAP . . . B 2 26.636 14.296 42.621 1 42.89 ? P2B NAP 501 C 1 HETATM 46 O O1X NAP . . . B 2 25.204 14.46 43.084 1 43.55 ? O1X NAP 501 C 1 HETATM 47 O O2X NAP . . . B 2 26.655 13.894 41.185 1 37.57 ? O2X NAP 501 C 1 HETATM 48 O O3X NAP . . . B 2 27.323 13.288 43.513 1 40.43 ? O3X NAP 501 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 48 #