data_6C4P
#
_model_server_result.job_id            3x76dydfSH_4tfldSJ_fyQ 
_model_server_result.datetime_utc      '2024-11-13 20:58:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":509}' 
#
_entry.id    6C4P 
#
_exptl.entry_id    6C4P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6C4P 
_cell.length_a            80.733 
_cell.length_b            80.733 
_cell.length_c            207.923 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -40.3665 69.916829 -34.653833 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 H N N 
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 142 A GLY 120 1_555 D NA NA . A NA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc2 A O ASN 205 A ASN 183 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc3 A OD1 ASP 208 A ASP 186 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc4 A OD2 ASP 208 A ASP 186 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc5 A OD1 ASN 209 A ASN 187 1_555 C CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc6 A OE1 GLN 275 A GLN 253 1_555 C CA CA . A CA 502 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc7 C CA CA . A CA 502 1_555 K O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc8 D NA NA . A NA 503 1_555 K O HOH . A HOH 606 12_564 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc9 D NA NA . A NA 503 1_555 K O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc10 D NA NA . A NA 503 1_555 K O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc11 D NA NA . A NA 503 1_555 K O HOH . A HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc12 D NA NA . A NA 503 1_555 K O HOH . A HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6C4P 
_atom_sites.fract_transf_matrix[1][1]    0.012387 
_atom_sites.fract_transf_matrix[1][2]    0.007151 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014303 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PMP A 1 501 501 PMP PMP . 
C 3 CA A 1 502 502 CA CA . 
D 4 NA A 1 503 503 NA NA . 
E 5 CL A 1 504 504 CL CL . 
F 6 PEG A 1 505 1 PEG PEG . 
G 6 PEG A 1 506 2 PEG PEG . 
H 7 EDO A 1 507 1 EDO EDO . 
I 7 EDO A 1 508 2 EDO EDO . 
J 7 EDO A 1 509 3 EDO EDO . 
K 8 HOH A 1 601 51 HOH HOH . 
K 8 HOH A 2 602 25 HOH HOH . 
K 8 HOH A 3 603 17 HOH HOH . 
K 8 HOH A 4 604 50 HOH HOH . 
K 8 HOH A 5 605 21 HOH HOH . 
K 8 HOH A 6 606 85 HOH HOH . 
K 8 HOH A 7 607 8 HOH HOH . 
K 8 HOH A 8 608 20 HOH HOH . 
K 8 HOH A 9 609 56 HOH HOH . 
K 8 HOH A 10 610 16 HOH HOH . 
K 8 HOH A 11 611 15 HOH HOH . 
K 8 HOH A 12 612 73 HOH HOH . 
K 8 HOH A 13 613 76 HOH HOH . 
K 8 HOH A 14 614 22 HOH HOH . 
K 8 HOH A 15 615 26 HOH HOH . 
K 8 HOH A 16 616 43 HOH HOH . 
K 8 HOH A 17 617 42 HOH HOH . 
K 8 HOH A 18 618 86 HOH HOH . 
K 8 HOH A 19 619 49 HOH HOH . 
K 8 HOH A 20 620 74 HOH HOH . 
K 8 HOH A 21 621 46 HOH HOH . 
K 8 HOH A 22 622 12 HOH HOH . 
K 8 HOH A 23 623 38 HOH HOH . 
K 8 HOH A 24 624 4 HOH HOH . 
K 8 HOH A 25 625 18 HOH HOH . 
K 8 HOH A 26 626 53 HOH HOH . 
K 8 HOH A 27 627 39 HOH HOH . 
K 8 HOH A 28 628 35 HOH HOH . 
K 8 HOH A 29 629 63 HOH HOH . 
K 8 HOH A 30 630 28 HOH HOH . 
K 8 HOH A 31 631 75 HOH HOH . 
K 8 HOH A 32 632 33 HOH HOH . 
K 8 HOH A 33 633 2 HOH HOH . 
K 8 HOH A 34 634 82 HOH HOH . 
K 8 HOH A 35 635 67 HOH HOH . 
K 8 HOH A 36 636 54 HOH HOH . 
K 8 HOH A 37 637 80 HOH HOH . 
K 8 HOH A 38 638 57 HOH HOH . 
K 8 HOH A 39 639 36 HOH HOH . 
K 8 HOH A 40 640 27 HOH HOH . 
K 8 HOH A 41 641 3 HOH HOH . 
K 8 HOH A 42 642 1 HOH HOH . 
K 8 HOH A 43 643 5 HOH HOH . 
K 8 HOH A 44 644 84 HOH HOH . 
K 8 HOH A 45 645 9 HOH HOH . 
K 8 HOH A 46 646 14 HOH HOH . 
K 8 HOH A 47 647 64 HOH HOH . 
K 8 HOH A 48 648 37 HOH HOH . 
K 8 HOH A 49 649 10 HOH HOH . 
K 8 HOH A 50 650 11 HOH HOH . 
K 8 HOH A 51 651 81 HOH HOH . 
K 8 HOH A 52 652 13 HOH HOH . 
K 8 HOH A 53 653 59 HOH HOH . 
K 8 HOH A 54 654 61 HOH HOH . 
K 8 HOH A 55 655 72 HOH HOH . 
K 8 HOH A 56 656 34 HOH HOH . 
K 8 HOH A 57 657 7 HOH HOH . 
K 8 HOH A 58 658 40 HOH HOH . 
K 8 HOH A 59 659 52 HOH HOH . 
K 8 HOH A 60 660 62 HOH HOH . 
K 8 HOH A 61 661 24 HOH HOH . 
K 8 HOH A 62 662 6 HOH HOH . 
K 8 HOH A 63 663 60 HOH HOH . 
K 8 HOH A 64 664 44 HOH HOH . 
K 8 HOH A 65 665 41 HOH HOH . 
K 8 HOH A 66 666 30 HOH HOH . 
K 8 HOH A 67 667 70 HOH HOH . 
K 8 HOH A 68 668 45 HOH HOH . 
K 8 HOH A 69 669 47 HOH HOH . 
K 8 HOH A 70 670 71 HOH HOH . 
K 8 HOH A 71 671 31 HOH HOH . 
K 8 HOH A 72 672 68 HOH HOH . 
K 8 HOH A 73 673 78 HOH HOH . 
K 8 HOH A 74 674 29 HOH HOH . 
K 8 HOH A 75 675 32 HOH HOH . 
K 8 HOH A 76 676 19 HOH HOH . 
K 8 HOH A 77 677 48 HOH HOH . 
K 8 HOH A 78 678 77 HOH HOH . 
K 8 HOH A 79 679 83 HOH HOH . 
K 8 HOH A 80 680 65 HOH HOH . 
K 8 HOH A 81 681 66 HOH HOH . 
K 8 HOH A 82 682 55 HOH HOH . 
K 8 HOH A 83 683 23 HOH HOH . 
K 8 HOH A 84 684 58 HOH HOH . 
K 8 HOH A 85 685 79 HOH HOH . 
K 8 HOH A 86 686 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 7 -7.765 41.99 -19.687 1 48.91 ? C1 EDO 509 A 1 
HETATM 2 O O1 EDO . . . J 7 -8.203 41.648 -18.38 1 51.22 ? O1 EDO 509 A 1 
HETATM 3 C C2 EDO . . . J 7 -6.251 42.245 -19.698 1 50.92 ? C2 EDO 509 A 1 
HETATM 4 O O2 EDO . . . J 7 -5.754 42.707 -20.925 1 52.49 ? O2 EDO 509 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#