data_6C4Q
#
_model_server_result.job_id            woEllj-Z50GNoeLvMrCZ8A 
_model_server_result.datetime_utc      '2024-12-26 20:37:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c4q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6C4Q 
#
_exptl.entry_id    6C4Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C4Q 
_cell.length_a            51.889 
_cell.length_b            51.889 
_cell.length_c            74.427 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C4Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 37.2135 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 25 A GLU 22 1_555 A N MSE 26 A MSE 23 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C GLU 25 A GLU 22 1_555 A N MSE 26 A MSE 23 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C MSE 26 A MSE 23 1_555 A N ARG 27 A ARG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 A C PRO 50 A PRO 47 1_555 A N MSE 51 A MSE 48 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C PRO 50 A PRO 47 1_555 A N MSE 51 A MSE 48 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 A C MSE 51 A MSE 48 1_555 A N VAL 52 A VAL 49 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale7 A C MSE 51 A MSE 48 1_555 A N VAL 52 A VAL 49 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale8 A C ALA 63 A ALA 60 1_555 A N MSE 64 A MSE 61 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? 
covale ? covale9 A C ALA 63 A ALA 60 1_555 A N MSE 64 A MSE 61 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C MSE 64 A MSE 61 1_555 A N ALA 65 A ALA 62 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale11 A C MSE 64 A MSE 61 1_555 A N ALA 65 A ALA 62 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 214 n n 
C1 H11 MPD sing 215 n n 
C1 H12 MPD sing 216 n n 
C1 H13 MPD sing 217 n n 
C2 O2 MPD sing 218 n n 
C2 CM MPD sing 219 n n 
C2 C3 MPD sing 220 n n 
O2 HO2 MPD sing 221 n n 
CM HM1 MPD sing 222 n n 
CM HM2 MPD sing 223 n n 
CM HM3 MPD sing 224 n n 
C3 C4 MPD sing 225 n n 
C3 H31 MPD sing 226 n n 
C3 H32 MPD sing 227 n n 
C4 O4 MPD sing 228 n n 
C4 C5 MPD sing 229 n n 
C4 H4 MPD sing 230 n n 
O4 HO4 MPD sing 231 n n 
C5 H51 MPD sing 232 n n 
C5 H52 MPD sing 233 n n 
C5 H53 MPD sing 234 n n 
#
_atom_sites.entry_id                     6C4Q 
_atom_sites.fract_transf_matrix[1][1]    0.019272 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013436 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD A 1 201 1 MPD MPD . 
C 3 EDO A 1 202 2 EDO EDO . 
D 4 HOH A 1 301 124 HOH HOH . 
D 4 HOH A 2 302 30 HOH HOH . 
D 4 HOH A 3 303 12 HOH HOH . 
D 4 HOH A 4 304 41 HOH HOH . 
D 4 HOH A 5 305 122 HOH HOH . 
D 4 HOH A 6 306 60 HOH HOH . 
D 4 HOH A 7 307 47 HOH HOH . 
D 4 HOH A 8 308 24 HOH HOH . 
D 4 HOH A 9 309 89 HOH HOH . 
D 4 HOH A 10 310 5 HOH HOH . 
D 4 HOH A 11 311 36 HOH HOH . 
D 4 HOH A 12 312 46 HOH HOH . 
D 4 HOH A 13 313 71 HOH HOH . 
D 4 HOH A 14 314 34 HOH HOH . 
D 4 HOH A 15 315 87 HOH HOH . 
D 4 HOH A 16 316 26 HOH HOH . 
D 4 HOH A 17 317 28 HOH HOH . 
D 4 HOH A 18 318 22 HOH HOH . 
D 4 HOH A 19 319 59 HOH HOH . 
D 4 HOH A 20 320 69 HOH HOH . 
D 4 HOH A 21 321 98 HOH HOH . 
D 4 HOH A 22 322 62 HOH HOH . 
D 4 HOH A 23 323 52 HOH HOH . 
D 4 HOH A 24 324 33 HOH HOH . 
D 4 HOH A 25 325 31 HOH HOH . 
D 4 HOH A 26 326 44 HOH HOH . 
D 4 HOH A 27 327 88 HOH HOH . 
D 4 HOH A 28 328 27 HOH HOH . 
D 4 HOH A 29 329 45 HOH HOH . 
D 4 HOH A 30 330 66 HOH HOH . 
D 4 HOH A 31 331 3 HOH HOH . 
D 4 HOH A 32 332 79 HOH HOH . 
D 4 HOH A 33 333 48 HOH HOH . 
D 4 HOH A 34 334 4 HOH HOH . 
D 4 HOH A 35 335 50 HOH HOH . 
D 4 HOH A 36 336 8 HOH HOH . 
D 4 HOH A 37 337 61 HOH HOH . 
D 4 HOH A 38 338 102 HOH HOH . 
D 4 HOH A 39 339 17 HOH HOH . 
D 4 HOH A 40 340 85 HOH HOH . 
D 4 HOH A 41 341 63 HOH HOH . 
D 4 HOH A 42 342 40 HOH HOH . 
D 4 HOH A 43 343 53 HOH HOH . 
D 4 HOH A 44 344 72 HOH HOH . 
D 4 HOH A 45 345 29 HOH HOH . 
D 4 HOH A 46 346 43 HOH HOH . 
D 4 HOH A 47 347 11 HOH HOH . 
D 4 HOH A 48 348 10 HOH HOH . 
D 4 HOH A 49 349 14 HOH HOH . 
D 4 HOH A 50 350 37 HOH HOH . 
D 4 HOH A 51 351 75 HOH HOH . 
D 4 HOH A 52 352 68 HOH HOH . 
D 4 HOH A 53 353 76 HOH HOH . 
D 4 HOH A 54 354 20 HOH HOH . 
D 4 HOH A 55 355 73 HOH HOH . 
D 4 HOH A 56 356 103 HOH HOH . 
D 4 HOH A 57 357 86 HOH HOH . 
D 4 HOH A 58 358 67 HOH HOH . 
D 4 HOH A 59 359 6 HOH HOH . 
D 4 HOH A 60 360 39 HOH HOH . 
D 4 HOH A 61 361 23 HOH HOH . 
D 4 HOH A 62 362 70 HOH HOH . 
D 4 HOH A 63 363 38 HOH HOH . 
D 4 HOH A 64 364 16 HOH HOH . 
D 4 HOH A 65 365 78 HOH HOH . 
D 4 HOH A 66 366 9 HOH HOH . 
D 4 HOH A 67 367 57 HOH HOH . 
D 4 HOH A 68 368 51 HOH HOH . 
D 4 HOH A 69 369 32 HOH HOH . 
D 4 HOH A 70 370 97 HOH HOH . 
D 4 HOH A 71 371 56 HOH HOH . 
D 4 HOH A 72 372 42 HOH HOH . 
D 4 HOH A 73 373 65 HOH HOH . 
D 4 HOH A 74 374 18 HOH HOH . 
D 4 HOH A 75 375 119 HOH HOH . 
D 4 HOH A 76 376 13 HOH HOH . 
D 4 HOH A 77 377 25 HOH HOH . 
D 4 HOH A 78 378 54 HOH HOH . 
D 4 HOH A 79 379 49 HOH HOH . 
D 4 HOH A 80 380 84 HOH HOH . 
D 4 HOH A 81 381 58 HOH HOH . 
D 4 HOH A 82 382 19 HOH HOH . 
D 4 HOH A 83 383 21 HOH HOH . 
D 4 HOH A 84 384 121 HOH HOH . 
D 4 HOH A 85 385 108 HOH HOH . 
D 4 HOH A 86 386 126 HOH HOH . 
D 4 HOH A 87 387 120 HOH HOH . 
D 4 HOH A 88 388 92 HOH HOH . 
D 4 HOH A 89 389 7 HOH HOH . 
D 4 HOH A 90 390 15 HOH HOH . 
D 4 HOH A 91 391 77 HOH HOH . 
D 4 HOH A 92 392 104 HOH HOH . 
D 4 HOH A 93 393 83 HOH HOH . 
D 4 HOH A 94 394 99 HOH HOH . 
D 4 HOH A 95 395 115 HOH HOH . 
D 4 HOH A 96 396 107 HOH HOH . 
D 4 HOH A 97 397 114 HOH HOH . 
D 4 HOH A 98 398 117 HOH HOH . 
D 4 HOH A 99 399 91 HOH HOH . 
D 4 HOH A 100 400 74 HOH HOH . 
D 4 HOH A 101 401 125 HOH HOH . 
D 4 HOH A 102 402 55 HOH HOH . 
D 4 HOH A 103 403 64 HOH HOH . 
D 4 HOH A 104 404 93 HOH HOH . 
D 4 HOH A 105 405 100 HOH HOH . 
D 4 HOH A 106 406 123 HOH HOH . 
D 4 HOH A 107 407 105 HOH HOH . 
D 4 HOH A 108 408 81 HOH HOH . 
D 4 HOH A 109 409 82 HOH HOH . 
D 4 HOH A 110 410 106 HOH HOH . 
D 4 HOH A 111 411 96 HOH HOH . 
D 4 HOH A 112 412 35 HOH HOH . 
D 4 HOH A 113 413 116 HOH HOH . 
D 4 HOH A 114 414 110 HOH HOH . 
D 4 HOH A 115 415 101 HOH HOH . 
D 4 HOH A 116 416 109 HOH HOH . 
D 4 HOH A 117 417 95 HOH HOH . 
D 4 HOH A 118 418 94 HOH HOH . 
D 4 HOH A 119 419 90 HOH HOH . 
D 4 HOH A 120 420 80 HOH HOH . 
D 4 HOH A 121 421 111 HOH HOH . 
D 4 HOH A 122 422 112 HOH HOH . 
D 4 HOH A 123 423 113 HOH HOH . 
D 4 HOH A 124 424 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . B 2 -14.685 20.566 17.607 1 39.28 ? C1 MPD 201 A 1 
HETATM 2 C C2 MPD . . . B 2 -13.584 19.619 17.295 1 37.39 ? C2 MPD 201 A 1 
HETATM 3 O O2 MPD . . . B 2 -12.443 20.126 18.01 1 43.28 ? O2 MPD 201 A 1 
HETATM 4 C CM MPD . . . B 2 -13.966 18.284 17.819 1 39.24 ? CM MPD 201 A 1 
HETATM 5 C C3 MPD . . . B 2 -13.415 19.571 15.768 1 34.03 ? C3 MPD 201 A 1 
HETATM 6 C C4 MPD . . . B 2 -14.707 19.341 15.012 1 32.04 ? C4 MPD 201 A 1 
HETATM 7 O O4 MPD . . . B 2 -15.65 20.353 15.089 1 30.09 ? O4 MPD 201 A 1 
HETATM 8 C C5 MPD . . . B 2 -14.481 19.303 13.528 1 32.13 ? C5 MPD 201 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#