data_6C4R # _model_server_result.job_id ncV-mPp3zbccENVHhkMtiA _model_server_result.datetime_utc '2024-11-27 14:44:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6C4R # _exptl.entry_id 6C4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C4R _cell.length_a 187.741 _cell.length_b 49.092 _cell.length_c 58.585 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 187.741 49.092 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6C4R _atom_sites.fract_transf_matrix[1][1] 0.005326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 2 GOL A 1 502 2 GOL GOL . D 3 SO4 A 1 503 1 SO4 SO4 . E 3 SO4 A 1 504 2 SO4 SO4 . F 3 SO4 A 1 505 3 SO4 SO4 . G 3 SO4 A 1 506 4 SO4 SO4 . H 4 HOH A 1 601 43 HOH HOH . H 4 HOH A 2 602 29 HOH HOH . H 4 HOH A 3 603 22 HOH HOH . H 4 HOH A 4 604 5 HOH HOH . H 4 HOH A 5 605 7 HOH HOH . H 4 HOH A 6 606 4 HOH HOH . H 4 HOH A 7 607 13 HOH HOH . H 4 HOH A 8 608 1 HOH HOH . H 4 HOH A 9 609 8 HOH HOH . H 4 HOH A 10 610 31 HOH HOH . H 4 HOH A 11 611 2 HOH HOH . H 4 HOH A 12 612 40 HOH HOH . H 4 HOH A 13 613 20 HOH HOH . H 4 HOH A 14 614 59 HOH HOH . H 4 HOH A 15 615 16 HOH HOH . H 4 HOH A 16 616 9 HOH HOH . H 4 HOH A 17 617 10 HOH HOH . H 4 HOH A 18 618 37 HOH HOH . H 4 HOH A 19 619 41 HOH HOH . H 4 HOH A 20 620 35 HOH HOH . H 4 HOH A 21 621 25 HOH HOH . H 4 HOH A 22 622 11 HOH HOH . H 4 HOH A 23 623 32 HOH HOH . H 4 HOH A 24 624 19 HOH HOH . H 4 HOH A 25 625 55 HOH HOH . H 4 HOH A 26 626 51 HOH HOH . H 4 HOH A 27 627 56 HOH HOH . H 4 HOH A 28 628 6 HOH HOH . H 4 HOH A 29 629 12 HOH HOH . H 4 HOH A 30 630 36 HOH HOH . H 4 HOH A 31 631 28 HOH HOH . H 4 HOH A 32 632 47 HOH HOH . H 4 HOH A 33 633 52 HOH HOH . H 4 HOH A 34 634 39 HOH HOH . H 4 HOH A 35 635 17 HOH HOH . H 4 HOH A 36 636 18 HOH HOH . H 4 HOH A 37 637 30 HOH HOH . H 4 HOH A 38 638 34 HOH HOH . H 4 HOH A 39 639 24 HOH HOH . H 4 HOH A 40 640 26 HOH HOH . H 4 HOH A 41 641 38 HOH HOH . H 4 HOH A 42 642 3 HOH HOH . H 4 HOH A 43 643 15 HOH HOH . H 4 HOH A 44 644 49 HOH HOH . H 4 HOH A 45 645 45 HOH HOH . H 4 HOH A 46 646 27 HOH HOH . H 4 HOH A 47 647 14 HOH HOH . H 4 HOH A 48 648 33 HOH HOH . H 4 HOH A 49 649 42 HOH HOH . H 4 HOH A 50 650 21 HOH HOH . H 4 HOH A 51 651 53 HOH HOH . H 4 HOH A 52 652 44 HOH HOH . H 4 HOH A 53 653 46 HOH HOH . H 4 HOH A 54 654 50 HOH HOH . H 4 HOH A 55 655 58 HOH HOH . H 4 HOH A 56 656 23 HOH HOH . H 4 HOH A 57 657 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 44.83 45.828 19.924 1 60.9 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 43.764 46.662 19.604 1 67.58 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 46.085 46.423 19.266 1 67.16 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 47.202 45.558 19.422 1 56.76 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 45.671 46.679 17.773 1 58.69 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 46.691 47.442 17.201 1 57.25 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 44.972 45.749 20.881 1 73.12 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 44.685 44.924 19.603 1 73.12 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 43.058 46.253 19.841 1 81.15 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 46.333 47.254 19.7 1 80.64 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 47.758 45.736 18.804 1 68.16 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 44.8 47.105 17.749 1 70.47 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 45.555 45.83 17.319 1 70.47 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 47.304 46.899 16.973 1 68.74 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #