data_6C4T # _model_server_result.job_id 3mMu5oJZqBX6FmC91XxPNg _model_server_result.datetime_utc '2024-10-10 11:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6C4T # _exptl.entry_id 6C4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C4T _cell.length_a 186.096 _cell.length_b 49.258 _cell.length_c 59.106 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 186.096 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6C4T _atom_sites.fract_transf_matrix[1][1] 0.005374 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020301 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA7 A 1 501 1 NA7 NAP . C 3 GOL A 1 502 1 GOL GOL . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 4 HOH HOH . D 4 HOH A 3 603 9 HOH HOH . D 4 HOH A 4 604 7 HOH HOH . D 4 HOH A 5 605 3 HOH HOH . D 4 HOH A 6 606 6 HOH HOH . D 4 HOH A 7 607 2 HOH HOH . D 4 HOH A 8 608 5 HOH HOH . D 4 HOH A 9 609 10 HOH HOH . D 4 HOH A 10 610 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 44.091 21.744 18.738 1 72.61 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 43.251 21.911 19.834 1 73.88 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 45.445 22.351 19.122 1 73.12 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 46.445 21.416 19.467 1 72.55 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 45.802 23.171 17.892 1 72.65 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 45.578 22.34 16.733 1 71.14 ? O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . C 3 44.21 20.814 18.492 1 52.01 ? H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . C 3 43.742 22.187 17.949 1 52.01 ? H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . C 3 42.494 21.597 19.608 1 52.01 ? HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . C 3 45.347 22.926 19.897 1 52.01 ? H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . C 3 46.565 20.904 18.8 1 52.01 ? HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . C 3 45.282 23.99 17.893 1 52.01 ? H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . C 3 46.726 23.459 17.955 1 52.01 ? H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . C 3 45.761 22.815 16.052 1 52.01 ? HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #