data_6C4U
#
_model_server_result.job_id            3EtL0Ton5Z94jWVfo6NQRA 
_model_server_result.datetime_utc      '2025-01-06 22:30:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6c4u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    6C4U 
#
_exptl.entry_id    6C4U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6C4U 
_cell.length_a            70.18 
_cell.length_b            72.37 
_cell.length_c            280.35 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6C4U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
PISA dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
F,K,S,W 1 1 
A,I,M,N 2 1 
B,H,O,U 3 1 
C,J,P,V 4 1 
D,L,Q,X 5 1 
E,G,R,T 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 G C PRO 4 G PRO 4 1_555 G N TPO 5 G TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 G C TPO 5 G TPO 5 1_555 G N PRO 6 G PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale3 H C PRO 4 I PRO 4 1_555 H N TPO 5 I TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 H C TPO 5 I TPO 5 1_555 H N PRO 6 I PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale5 I C PRO 4 H PRO 4 1_555 I N TPO 5 H TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale6 I C TPO 5 H TPO 5 1_555 I N PRO 6 H PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale7 J C PRO 4 J PRO 4 1_555 J N TPO 5 J TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale8 J C TPO 5 J TPO 5 1_555 J N PRO 6 J PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale9 K C PRO 4 L PRO 4 1_555 K N TPO 5 L TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 K C TPO 5 L TPO 5 1_555 K N PRO 6 L PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale11 L C PRO 4 K PRO 4 1_555 L N TPO 5 K TPO 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale12 L C TPO 5 K TPO 5 1_555 L N PRO 6 K PRO 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6C4U 
_atom_sites.fract_transf_matrix[1][1]    0.014249 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013818 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003567 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 GOL B 1 201 1 GOL GOL . 
N 4 HOH B 1 301 40 HOH HOH . 
N 4 HOH B 2 302 41 HOH HOH . 
N 4 HOH B 3 303 30 HOH HOH . 
N 4 HOH B 4 304 48 HOH HOH . 
N 4 HOH B 5 305 44 HOH HOH . 
N 4 HOH B 6 306 3 HOH HOH . 
N 4 HOH B 7 307 5 HOH HOH . 
O 4 HOH C 1 201 26 HOH HOH . 
O 4 HOH C 2 202 52 HOH HOH . 
O 4 HOH C 3 203 32 HOH HOH . 
O 4 HOH C 4 204 9 HOH HOH . 
O 4 HOH C 5 205 31 HOH HOH . 
O 4 HOH C 6 206 53 HOH HOH . 
O 4 HOH C 7 207 50 HOH HOH . 
O 4 HOH C 8 208 14 HOH HOH . 
O 4 HOH C 9 209 55 HOH HOH . 
O 4 HOH C 10 210 54 HOH HOH . 
O 4 HOH C 11 211 51 HOH HOH . 
O 4 HOH C 12 212 18 HOH HOH . 
O 4 HOH C 13 213 42 HOH HOH . 
O 4 HOH C 14 214 7 HOH HOH . 
P 4 HOH D 1 201 62 HOH HOH . 
P 4 HOH D 2 202 56 HOH HOH . 
P 4 HOH D 3 203 25 HOH HOH . 
P 4 HOH D 4 204 13 HOH HOH . 
P 4 HOH D 5 205 20 HOH HOH . 
P 4 HOH D 6 206 17 HOH HOH . 
P 4 HOH D 7 207 21 HOH HOH . 
P 4 HOH D 8 208 19 HOH HOH . 
P 4 HOH D 9 209 34 HOH HOH . 
P 4 HOH D 10 210 65 HOH HOH . 
P 4 HOH D 11 211 45 HOH HOH . 
P 4 HOH D 12 212 8 HOH HOH . 
Q 4 HOH E 1 201 29 HOH HOH . 
Q 4 HOH E 2 202 36 HOH HOH . 
Q 4 HOH E 3 203 28 HOH HOH . 
Q 4 HOH E 4 204 58 HOH HOH . 
Q 4 HOH E 5 205 24 HOH HOH . 
Q 4 HOH E 6 206 49 HOH HOH . 
Q 4 HOH E 7 207 1 HOH HOH . 
Q 4 HOH E 8 208 66 HOH HOH . 
Q 4 HOH E 9 209 37 HOH HOH . 
Q 4 HOH E 10 210 23 HOH HOH . 
Q 4 HOH E 11 211 38 HOH HOH . 
Q 4 HOH E 12 212 46 HOH HOH . 
R 4 HOH A 1 201 43 HOH HOH . 
R 4 HOH A 2 202 59 HOH HOH . 
R 4 HOH A 3 203 57 HOH HOH . 
R 4 HOH A 4 204 6 HOH HOH . 
R 4 HOH A 5 205 27 HOH HOH . 
R 4 HOH A 6 206 16 HOH HOH . 
R 4 HOH A 7 207 12 HOH HOH . 
R 4 HOH A 8 208 11 HOH HOH . 
R 4 HOH A 9 209 15 HOH HOH . 
R 4 HOH A 10 210 10 HOH HOH . 
R 4 HOH A 11 211 4 HOH HOH . 
S 4 HOH F 1 201 63 HOH HOH . 
S 4 HOH F 2 202 33 HOH HOH . 
S 4 HOH F 3 203 2 HOH HOH . 
S 4 HOH F 4 204 60 HOH HOH . 
S 4 HOH F 5 205 64 HOH HOH . 
T 4 HOH G 1 101 47 HOH HOH . 
T 4 HOH G 2 102 39 HOH HOH . 
U 4 HOH I 1 101 61 HOH HOH . 
V 4 HOH J 1 101 22 HOH HOH . 
W 4 HOH L 1 101 67 HOH HOH . 
X 4 HOH K 1 101 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 3 3.167 -20.375 -28.666 1 95.69 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . M 3 2.958 -20.354 -27.22 1 85.23 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . M 3 4.154 -21.453 -29.144 1 94.01 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . M 3 5.241 -21.568 -28.211 1 119.14 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . M 3 3.534 -22.843 -29.308 1 83.86 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . M 3 3.427 -23.556 -28.062 1 68.51 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#