data_6C56 # _model_server_result.job_id isPRbHBrJ4VmNfDUsDh3rQ _model_server_result.datetime_utc '2024-10-18 16:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6C56 # _exptl.entry_id 6C56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.271 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[(2-phenylthieno[2,3-d]pyrimidin-4-yl)amino]methylene}bis(phosphonic acid)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C56 _cell.length_a 185.1 _cell.length_b 185.1 _cell.length_c 115.2 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 227 A CYS 205 1_555 A SG CYS 269 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? disulf ? disulf2 B SG CYS 227 B CYS 205 1_555 B SG CYS 269 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C13 H13 N3 O6 P2 S' _chem_comp.formula_weight 401.271 _chem_comp.id VT0 _chem_comp.mon_nstd_flag . _chem_comp.name '{[(2-phenylthieno[2,3-d]pyrimidin-4-yl)amino]methylene}bis(phosphonic acid)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAO PAL VT0 doub 376 n n PAL OAP VT0 sing 377 n n PAL OAN VT0 sing 378 n n PAL CAK VT0 sing 379 n n CAK PAM VT0 sing 380 n n CAK NAJ VT0 sing 381 n n PAM OAR VT0 doub 382 n n PAM OAS VT0 sing 383 n n PAM OAQ VT0 sing 384 n n NAJ C4 VT0 sing 385 n n C4 N3 VT0 doub 386 n y C4 C5 VT0 sing 387 n y N3 C2 VT0 sing 388 n y C5 CAC VT0 sing 389 n y C5 C6 VT0 doub 390 n y CAC CAD VT0 doub 391 n y CAD SAE VT0 sing 392 n y SAE C6 VT0 sing 393 n y C6 N1 VT0 sing 394 n y N1 C2 VT0 doub 395 n y C2 CAT VT0 sing 396 n n CAT CAU VT0 doub 397 n y CAT CAY VT0 sing 398 n y CAU CAV VT0 sing 399 n y CAV CAW VT0 doub 400 n y CAW CAX VT0 sing 401 n y CAX CAY VT0 doub 402 n y OAP H1 VT0 sing 403 n n OAN H2 VT0 sing 404 n n CAK H3 VT0 sing 405 n n OAS H4 VT0 sing 406 n n OAQ H5 VT0 sing 407 n n NAJ H6 VT0 sing 408 n n CAC H8 VT0 sing 409 n n CAD H9 VT0 sing 410 n n CAU H12 VT0 sing 411 n n CAV H13 VT0 sing 412 n n CAW H14 VT0 sing 413 n n CAX H15 VT0 sing 414 n n CAY H16 VT0 sing 415 n n # _atom_sites.entry_id 6C56 _atom_sites.fract_transf_matrix[1][1] 0.005402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VT0 B 1 401 1 VT0 VT0 . D 3 HOH A 1 401 3 HOH HOH . D 3 HOH A 2 402 40 HOH HOH . D 3 HOH A 3 403 22 HOH HOH . D 3 HOH A 4 404 4 HOH HOH . D 3 HOH A 5 405 24 HOH HOH . D 3 HOH A 6 406 23 HOH HOH . D 3 HOH A 7 407 37 HOH HOH . D 3 HOH A 8 408 25 HOH HOH . D 3 HOH A 9 409 6 HOH HOH . D 3 HOH A 10 410 8 HOH HOH . D 3 HOH A 11 411 21 HOH HOH . D 3 HOH A 12 412 19 HOH HOH . D 3 HOH A 13 413 9 HOH HOH . D 3 HOH A 14 414 10 HOH HOH . D 3 HOH A 15 415 20 HOH HOH . D 3 HOH A 16 416 1 HOH HOH . D 3 HOH A 17 417 11 HOH HOH . D 3 HOH A 18 418 36 HOH HOH . D 3 HOH A 19 419 35 HOH HOH . D 3 HOH A 20 420 12 HOH HOH . D 3 HOH A 21 421 5 HOH HOH . E 3 HOH B 1 501 39 HOH HOH . E 3 HOH B 2 502 13 HOH HOH . E 3 HOH B 3 503 15 HOH HOH . E 3 HOH B 4 504 27 HOH HOH . E 3 HOH B 5 505 29 HOH HOH . E 3 HOH B 6 506 34 HOH HOH . E 3 HOH B 7 507 32 HOH HOH . E 3 HOH B 8 508 30 HOH HOH . E 3 HOH B 9 509 2 HOH HOH . E 3 HOH B 10 510 14 HOH HOH . E 3 HOH B 11 511 16 HOH HOH . E 3 HOH B 12 512 17 HOH HOH . E 3 HOH B 13 513 31 HOH HOH . E 3 HOH B 14 514 7 HOH HOH . E 3 HOH B 15 515 33 HOH HOH . E 3 HOH B 16 516 26 HOH HOH . E 3 HOH B 17 517 38 HOH HOH . E 3 HOH B 18 518 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAO VT0 . . . C 2 -66.555 26.138 -30.789 0.5 87.45 ? OAO VT0 401 B 1 HETATM 2 P PAL VT0 . . . C 2 -65.203 25.966 -29.927 0.5 93.65 ? PAL VT0 401 B 1 HETATM 3 O OAP VT0 . . . C 2 -65.35 24.633 -28.972 0.5 79.5 ? OAP VT0 401 B 1 HETATM 4 O OAN VT0 . . . C 2 -63.983 25.957 -30.791 0.5 96.1 ? OAN VT0 401 B 1 HETATM 5 C CAK VT0 . . . C 2 -65.136 27.379 -28.786 0.5 99.09 ? CAK VT0 401 B 1 HETATM 6 P PAM VT0 . . . C 2 -66.599 27.337 -27.656 0.5 92.09 ? PAM VT0 401 B 1 HETATM 7 O OAR VT0 . . . C 2 -67.91 27.336 -28.636 0.5 77.09 ? OAR VT0 401 B 1 HETATM 8 O OAS VT0 . . . C 2 -66.472 28.792 -26.915 0.5 91.06 ? OAS VT0 401 B 1 HETATM 9 O OAQ VT0 . . . C 2 -66.506 26.203 -26.707 0.5 83.61 ? OAQ VT0 401 B 1 HETATM 10 N NAJ VT0 . . . C 2 -65.001 28.661 -29.537 0.5 94.15 ? NAJ VT0 401 B 1 HETATM 11 C C4 VT0 . . . C 2 -63.897 29.353 -29.212 0.5 90.9 ? C4 VT0 401 B 1 HETATM 12 N N3 VT0 . . . C 2 -62.945 28.741 -28.497 0.5 84.79 ? N3 VT0 401 B 1 HETATM 13 C C5 VT0 . . . C 2 -63.768 30.615 -29.577 0.5 88.91 ? C5 VT0 401 B 1 HETATM 14 C CAC VT0 . . . C 2 -64.635 31.35 -30.302 0.5 94.58 ? CAC VT0 401 B 1 HETATM 15 C CAD VT0 . . . C 2 -64.193 32.593 -30.513 0.5 95.84 ? CAD VT0 401 B 1 HETATM 16 S SAE VT0 . . . C 2 -62.693 32.719 -29.747 0.5 98.14 ? SAE VT0 401 B 1 HETATM 17 C C6 VT0 . . . C 2 -62.632 31.256 -29.201 0.5 84.49 ? C6 VT0 401 B 1 HETATM 18 N N1 VT0 . . . C 2 -61.668 30.658 -28.497 0.5 75.16 ? N1 VT0 401 B 1 HETATM 19 C C2 VT0 . . . C 2 -61.831 29.372 -28.154 0.5 82.31 ? C2 VT0 401 B 1 HETATM 20 C CAT VT0 . . . C 2 -60.925 28.666 -27.365 0.5 86.72 ? CAT VT0 401 B 1 HETATM 21 C CAU VT0 . . . C 2 -61.279 27.407 -26.836 0.5 83.98 ? CAU VT0 401 B 1 HETATM 22 C CAV VT0 . . . C 2 -60.4 26.702 -26.014 0.5 78.13 ? CAV VT0 401 B 1 HETATM 23 C CAW VT0 . . . C 2 -59.18 27.297 -25.696 0.5 84.13 ? CAW VT0 401 B 1 HETATM 24 C CAX VT0 . . . C 2 -58.832 28.551 -26.208 0.5 84.2 ? CAX VT0 401 B 1 HETATM 25 C CAY VT0 . . . C 2 -59.705 29.241 -27.034 0.5 89.76 ? CAY VT0 401 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #