data_6C5T # _model_server_result.job_id 0gfBY8jiI780xBxXn4IQKQ _model_server_result.datetime_utc '2024-11-22 08:59:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6C5T # _exptl.entry_id 6C5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 508.651 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{4-[(5-{[(1R)-1-(3-cyclopropylphenyl)ethyl]carbamoyl}-2,3-dimethyl-1H-indol-1-yl)methyl]phenyl}-2-methylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C5T _cell.length_a 63.64 _cell.length_b 63.64 _cell.length_c 365.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 83 A GLY 284 1_555 A N CSO 84 A CSO 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSO 84 A CSO 285 1_555 A N GLN 85 A GLN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C33 H36 N2 O3' _chem_comp.formula_weight 508.651 _chem_comp.id EKP _chem_comp.mon_nstd_flag . _chem_comp.name '2-{4-[(5-{[(1R)-1-(3-cyclopropylphenyl)ethyl]carbamoyl}-2,3-dimethyl-1H-indol-1-yl)methyl]phenyl}-2-methylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 EKP doub 84 n n O38 C36 EKP sing 85 n n C36 C33 EKP sing 86 n n C25 C22 EKP sing 87 n n C29 C28 EKP doub 88 n y C29 C30 EKP sing 89 n y C28 C27 EKP sing 90 n y C33 C30 EKP sing 91 n n C33 C35 EKP sing 92 n n C33 C34 EKP sing 93 n n C30 C31 EKP doub 94 n y C27 C26 EKP sing 95 n n C27 C32 EKP doub 96 n y C26 N21 EKP sing 97 n n C31 C32 EKP sing 98 n y C22 N21 EKP sing 99 n y C22 C23 EKP doub 100 n y N21 C18 EKP sing 101 n y C23 C24 EKP sing 102 n n C23 C19 EKP sing 103 n y C18 C19 EKP doub 104 n y C18 C17 EKP sing 105 n y C19 C20 EKP sing 106 n y C17 C16 EKP doub 107 n y C20 C14 EKP doub 108 n y C16 C14 EKP sing 109 n y C14 C13 EKP sing 110 n n C13 O15 EKP doub 111 n n C13 N11 EKP sing 112 n n N11 C10 EKP sing 113 n n C10 C12 EKP sing 114 n n C10 C05 EKP sing 115 n n C05 C06 EKP doub 116 n y C05 C04 EKP sing 117 n y C06 C01 EKP sing 118 n y C04 C03 EKP doub 119 n y C01 C07 EKP sing 120 n n C01 C02 EKP doub 121 n y C03 C02 EKP sing 122 n y C07 C08 EKP sing 123 n n C07 C09 EKP sing 124 n n C08 C09 EKP sing 125 n n C10 H1 EKP sing 126 n n C17 H2 EKP sing 127 n n C20 H3 EKP sing 128 n n C24 H4 EKP sing 129 n n C24 H5 EKP sing 130 n n C24 H6 EKP sing 131 n n C26 H7 EKP sing 132 n n C26 H8 EKP sing 133 n n C28 H9 EKP sing 134 n n C02 H10 EKP sing 135 n n C03 H11 EKP sing 136 n n C04 H12 EKP sing 137 n n C06 H13 EKP sing 138 n n C07 H14 EKP sing 139 n n C08 H15 EKP sing 140 n n C08 H16 EKP sing 141 n n C09 H17 EKP sing 142 n n C09 H18 EKP sing 143 n n C12 H19 EKP sing 144 n n C12 H20 EKP sing 145 n n C12 H21 EKP sing 146 n n C16 H22 EKP sing 147 n n C25 H23 EKP sing 148 n n C25 H24 EKP sing 149 n n C25 H25 EKP sing 150 n n C29 H26 EKP sing 151 n n C31 H27 EKP sing 152 n n C32 H28 EKP sing 153 n n C34 H29 EKP sing 154 n n C34 H30 EKP sing 155 n n C34 H31 EKP sing 156 n n C35 H32 EKP sing 157 n n C35 H33 EKP sing 158 n n C35 H34 EKP sing 159 n n N11 H35 EKP sing 160 n n O38 H36 EKP sing 161 n n # _atom_sites.entry_id 6C5T _atom_sites.fract_transf_matrix[1][1] 0.015713 _atom_sites.fract_transf_matrix[1][2] 0.009072 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EKP A 1 501 1 EKP LIG . C 3 HOH A 1 601 77 HOH HOH . C 3 HOH A 2 602 41 HOH HOH . C 3 HOH A 3 603 5 HOH HOH . C 3 HOH A 4 604 64 HOH HOH . C 3 HOH A 5 605 13 HOH HOH . C 3 HOH A 6 606 10 HOH HOH . C 3 HOH A 7 607 8 HOH HOH . C 3 HOH A 8 608 54 HOH HOH . C 3 HOH A 9 609 72 HOH HOH . C 3 HOH A 10 610 82 HOH HOH . C 3 HOH A 11 611 66 HOH HOH . C 3 HOH A 12 612 81 HOH HOH . C 3 HOH A 13 613 46 HOH HOH . C 3 HOH A 14 614 75 HOH HOH . C 3 HOH A 15 615 34 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 70 HOH HOH . C 3 HOH A 18 618 63 HOH HOH . C 3 HOH A 19 619 2 HOH HOH . C 3 HOH A 20 620 32 HOH HOH . C 3 HOH A 21 621 78 HOH HOH . C 3 HOH A 22 622 73 HOH HOH . C 3 HOH A 23 623 74 HOH HOH . C 3 HOH A 24 624 4 HOH HOH . C 3 HOH A 25 625 39 HOH HOH . C 3 HOH A 26 626 3 HOH HOH . C 3 HOH A 27 627 45 HOH HOH . C 3 HOH A 28 628 79 HOH HOH . C 3 HOH A 29 629 71 HOH HOH . C 3 HOH A 30 630 33 HOH HOH . C 3 HOH A 31 631 61 HOH HOH . C 3 HOH A 32 632 69 HOH HOH . C 3 HOH A 33 633 42 HOH HOH . C 3 HOH A 34 634 15 HOH HOH . C 3 HOH A 35 635 57 HOH HOH . C 3 HOH A 36 636 56 HOH HOH . C 3 HOH A 37 637 44 HOH HOH . C 3 HOH A 38 638 40 HOH HOH . C 3 HOH A 39 639 51 HOH HOH . C 3 HOH A 40 640 30 HOH HOH . C 3 HOH A 41 641 59 HOH HOH . C 3 HOH A 42 642 25 HOH HOH . C 3 HOH A 43 643 80 HOH HOH . C 3 HOH A 44 644 14 HOH HOH . C 3 HOH A 45 645 47 HOH HOH . C 3 HOH A 46 646 50 HOH HOH . C 3 HOH A 47 647 1 HOH HOH . C 3 HOH A 48 648 37 HOH HOH . C 3 HOH A 49 649 38 HOH HOH . C 3 HOH A 50 650 11 HOH HOH . C 3 HOH A 51 651 48 HOH HOH . C 3 HOH A 52 652 68 HOH HOH . C 3 HOH A 53 653 27 HOH HOH . C 3 HOH A 54 654 36 HOH HOH . C 3 HOH A 55 655 52 HOH HOH . C 3 HOH A 56 656 58 HOH HOH . C 3 HOH A 57 657 22 HOH HOH . C 3 HOH A 58 658 76 HOH HOH . C 3 HOH A 59 659 28 HOH HOH . C 3 HOH A 60 660 53 HOH HOH . C 3 HOH A 61 661 26 HOH HOH . C 3 HOH A 62 662 19 HOH HOH . C 3 HOH A 63 663 18 HOH HOH . C 3 HOH A 64 664 12 HOH HOH . C 3 HOH A 65 665 24 HOH HOH . C 3 HOH A 66 666 9 HOH HOH . C 3 HOH A 67 667 43 HOH HOH . C 3 HOH A 68 668 21 HOH HOH . C 3 HOH A 69 669 67 HOH HOH . C 3 HOH A 70 670 20 HOH HOH . C 3 HOH A 71 671 60 HOH HOH . C 3 HOH A 72 672 55 HOH HOH . C 3 HOH A 73 673 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EKP . . . B 2 21.143 -28.855 24.777 1 110.99 ? C10 EKP 501 A 1 HETATM 2 C C13 EKP . . . B 2 20.13 -27.576 22.794 1 103.04 ? C13 EKP 501 A 1 HETATM 3 C C17 EKP . . . B 2 21.767 -26.818 19.423 1 88.92 ? C17 EKP 501 A 1 HETATM 4 C C20 EKP . . . B 2 19.327 -26.362 20.698 1 85.26 ? C20 EKP 501 A 1 HETATM 5 C C22 EKP . . . B 2 19.529 -25.015 17.293 1 81.36 ? C22 EKP 501 A 1 HETATM 6 C C24 EKP . . . B 2 17.298 -24.659 18.613 1 97 ? C24 EKP 501 A 1 HETATM 7 C C26 EKP . . . B 2 21.769 -25.639 16.546 1 75.3 ? C26 EKP 501 A 1 HETATM 8 C C28 EKP . . . B 2 24.129 -24.951 16.179 1 91.21 ? C28 EKP 501 A 1 HETATM 9 C C01 EKP . . . B 2 19.231 -26.767 27.346 1 114.81 ? C01 EKP 501 A 1 HETATM 10 C C02 EKP . . . B 2 20.274 -26.136 28.019 1 119.88 ? C02 EKP 501 A 1 HETATM 11 C C03 EKP . . . B 2 21.59 -26.385 27.642 1 119.57 ? C03 EKP 501 A 1 HETATM 12 C C04 EKP . . . B 2 21.864 -27.26 26.595 1 115.04 ? C04 EKP 501 A 1 HETATM 13 C C05 EKP . . . B 2 20.824 -27.885 25.91 1 112.14 ? C05 EKP 501 A 1 HETATM 14 C C06 EKP . . . B 2 19.507 -27.646 26.299 1 114.55 ? C06 EKP 501 A 1 HETATM 15 C C07 EKP . . . B 2 17.779 -26.495 27.762 1 100.36 ? C07 EKP 501 A 1 HETATM 16 C C08 EKP . . . B 2 17.562 -25.3 28.679 1 90.44 ? C08 EKP 501 A 1 HETATM 17 C C09 EKP . . . B 2 17.46 -26.713 29.234 1 90.87 ? C09 EKP 501 A 1 HETATM 18 C C12 EKP . . . B 2 20.139 -29.994 24.787 1 112.43 ? C12 EKP 501 A 1 HETATM 19 C C14 EKP . . . B 2 20.346 -27.049 21.37 1 89.31 ? C14 EKP 501 A 1 HETATM 20 C C16 EKP . . . B 2 21.564 -27.281 20.723 1 85.45 ? C16 EKP 501 A 1 HETATM 21 C C18 EKP . . . B 2 20.744 -26.121 18.749 1 86.18 ? C18 EKP 501 A 1 HETATM 22 C C19 EKP . . . B 2 19.532 -25.893 19.385 1 87.43 ? C19 EKP 501 A 1 HETATM 23 C C23 EKP . . . B 2 18.731 -25.167 18.433 1 89.73 ? C23 EKP 501 A 1 HETATM 24 C C25 EKP . . . B 2 19.112 -24.305 16.006 1 79.65 ? C25 EKP 501 A 1 HETATM 25 C C27 EKP . . . B 2 22.849 -24.547 16.543 1 76.05 ? C27 EKP 501 A 1 HETATM 26 C C29 EKP . . . B 2 25.168 -24.034 16.135 1 85.62 ? C29 EKP 501 A 1 HETATM 27 C C30 EKP . . . B 2 24.92 -22.703 16.442 1 68.8 ? C30 EKP 501 A 1 HETATM 28 C C31 EKP . . . B 2 23.636 -22.287 16.803 1 50.92 ? C31 EKP 501 A 1 HETATM 29 C C32 EKP . . . B 2 22.588 -23.211 16.849 1 59.59 ? C32 EKP 501 A 1 HETATM 30 C C33 EKP . . . B 2 26.103 -21.714 16.382 1 80.59 ? C33 EKP 501 A 1 HETATM 31 C C34 EKP . . . B 2 27.03 -22.013 17.569 1 96.62 ? C34 EKP 501 A 1 HETATM 32 C C35 EKP . . . B 2 25.583 -20.268 16.456 1 82.23 ? C35 EKP 501 A 1 HETATM 33 C C36 EKP . . . B 2 26.884 -21.925 15.082 1 74.42 ? C36 EKP 501 A 1 HETATM 34 N N11 EKP . . . B 2 21.208 -28.277 23.461 1 107.89 ? N11 EKP 501 A 1 HETATM 35 N N21 EKP . . . B 2 20.709 -25.571 17.517 1 79.45 ? N21 EKP 501 A 1 HETATM 36 O O15 EKP . . . B 2 19.047 -27.422 23.329 1 110.45 ? O15 EKP 501 A 1 HETATM 37 O O37 EKP . . . B 2 26.609 -21.243 14.054 1 78.8 ? O37 EKP 501 A 1 HETATM 38 O O38 EKP . . . B 2 27.81 -22.783 15.035 1 64.22 ? O38 EKP 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #