data_6C5V # _model_server_result.job_id XSKeqOQp1rNd3rGoHcKmcA _model_server_result.datetime_utc '2024-11-26 18:53:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 6C5V # _exptl.entry_id 6C5V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 6 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 6 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 6 6 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 D 1 NAG A 1061 Glc 6 n F NAG 2 D 2 NAG A 1062 Glc 6 n F BMA 3 D 3 BMA A 1063 Man 6 n F MAN 4 D 4 MAN A 1064 Man 6 n F MAN 5 D 5 MAN A 1065 Man 6 n F MAN 6 D 6 MAN A 1066 Man # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 120 1_555 A SG CYS 319 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 285 A CYS 278 1_555 A SG CYS 342 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 461 A CYS 454 1_555 A SG CYS 485 A CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 541 A CYS 534 1_555 A SG CYS 594 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 619 A CYS 612 1_555 A SG CYS 622 A CYS 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 30 B CYS 28 1_555 B SG CYS 58 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 B SG CYS 31 B CYS 29 1_555 B SG CYS 81 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 C SG CYS 92 C CYS 99 1_555 C SG CYS 131 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf9 C SG CYS 95 C CYS 102 1_555 C SG CYS 108 C CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf10 C SG CYS 121 C CYS 128 1_555 C SG CYS 207 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 C SG CYS 125 C CYS 132 1_555 C SG CYS 209 C CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf12 C SG CYS 185 C CYS 192 1_555 C SG CYS 201 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf13 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf14 D SG CYS 150 H CYS 146 1_555 D SG CYS 206 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf15 E SG CYS 22 L CYS 22 1_555 E SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 E SG CYS 138 L CYS 138 1_555 E SG CYS 197 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? covale ? covale1 A ND2 ASN 67 A ASN 60 1_555 F C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 442 A ASN 435 1_555 G C1 NAG . A NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale3 A ND2 ASN 556 A ASN 549 1_555 H C1 NAG . A NAG 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 A ND2 ASN 671 A ASN 664 1_555 I C1 NAG . A NAG 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale5 B ND2 ASN 46 B ASN 44 1_555 J C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale6 B ND2 ASN 55 B ASN 53 1_555 K C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? covale ? covale7 C ND2 ASN 57 C ASN 64 1_555 L C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale8 C ND2 ASN 91 C ASN 98 1_555 M C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale9 C ND2 ASN 166 C ASN 173 1_555 N C1 NAG . C NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale10 D C PCA 1 H PCA 1 1_555 D N VAL 2 H VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 F O4 NAG . D NAG 1 1_555 F C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale12 F O4 NAG . D NAG 2 1_555 F C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale13 F O3 BMA . D BMA 3 1_555 F C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? covale ? covale14 F O6 BMA . D BMA 3 1_555 F C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale15 F O2 MAN . D MAN 4 1_555 F C1 MAN . D MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6C5V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 NAG A 1 707 1436 NAG Glc . H 7 NAG A 1 708 1550 NAG Glc . I 7 NAG A 1 709 1665 NAG Glc . J 7 NAG B 1 201 1045 NAG Glc . K 7 NAG B 1 202 1054 NAG Glc . L 7 NAG C 1 301 1065 NAG Glc . M 7 NAG C 1 302 1099 NAG Glc . N 7 NAG C 1 303 1731 NAG Glc . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 7 106.531 126.112 160.935 1 146.6 ? C1 NAG 301 C 1 HETATM 2 C C2 NAG . . . L 7 106.525 124.695 160.346 1 150.17 ? C2 NAG 301 C 1 HETATM 3 C C3 NAG . . . L 7 105.164 124.343 159.869 1 153.62 ? C3 NAG 301 C 1 HETATM 4 C C4 NAG . . . L 7 104.245 124.406 161.089 1 157.02 ? C4 NAG 301 C 1 HETATM 5 C C5 NAG . . . L 7 104.251 125.814 161.673 1 155.21 ? C5 NAG 301 C 1 HETATM 6 C C6 NAG . . . L 7 103.412 125.904 162.926 1 153.46 ? C6 NAG 301 C 1 HETATM 7 C C7 NAG . . . L 7 108.601 123.986 159.333 1 145.18 ? C7 NAG 301 C 1 HETATM 8 C C8 NAG . . . L 7 109.531 124.046 158.169 1 141.7 ? C8 NAG 301 C 1 HETATM 9 N N2 NAG . . . L 7 107.459 124.63 159.239 1 148.49 ? N2 NAG 301 C 1 HETATM 10 O O3 NAG . . . L 7 105.194 123.025 159.273 1 152.56 ? O3 NAG 301 C 1 HETATM 11 O O4 NAG . . . L 7 102.933 124.045 160.677 1 155.82 ? O4 NAG 301 C 1 HETATM 12 O O5 NAG . . . L 7 105.598 126.138 162.062 1 149.45 ? O5 NAG 301 C 1 HETATM 13 O O6 NAG . . . L 7 103.803 125.039 163.984 1 153.95 ? O6 NAG 301 C 1 HETATM 14 O O7 NAG . . . L 7 108.879 123.354 160.357 1 145.13 ? O7 NAG 301 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 428 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #