data_6C6A # _model_server_result.job_id 2QnfUzUmWQKQI7mklxVAMQ _model_server_result.datetime_utc '2024-11-07 22:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 6C6A # _exptl.entry_id 6C6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C6A _cell.length_a 42.171 _cell.length_b 106.15 _cell.length_c 107.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG E 311 NAG 3 n C NAG 2 C 2 NAG E 312 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 D C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 E C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 369 n n C1 O1 NAG sing 370 n n C1 O5 NAG sing 371 n n C1 H1 NAG sing 372 n n C2 C3 NAG sing 373 n n C2 N2 NAG sing 374 n n C2 H2 NAG sing 375 n n C3 C4 NAG sing 376 n n C3 O3 NAG sing 377 n n C3 H3 NAG sing 378 n n C4 C5 NAG sing 379 n n C4 O4 NAG sing 380 n n C4 H4 NAG sing 381 n n C5 C6 NAG sing 382 n n C5 O5 NAG sing 383 n n C5 H5 NAG sing 384 n n C6 O6 NAG sing 385 n n C6 H61 NAG sing 386 n n C6 H62 NAG sing 387 n n C7 C8 NAG sing 388 n n C7 N2 NAG sing 389 n n C7 O7 NAG doub 390 n n C8 H81 NAG sing 391 n n C8 H82 NAG sing 392 n n C8 H83 NAG sing 393 n n N2 HN2 NAG sing 394 n n O1 HO1 NAG sing 395 n n O3 HO3 NAG sing 396 n n O4 HO4 NAG sing 397 n n O6 HO6 NAG sing 398 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6C6A _atom_sites.fract_transf_matrix[1][1] 0.023713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 301 300 NAG NAG . E 4 NAG A 1 302 301 NAG NAG . F 5 EL7 A 1 305 501 EL7 141 . G 6 HOH A 1 401 206 HOH HOH . G 6 HOH A 2 402 67 HOH HOH . G 6 HOH A 3 403 49 HOH HOH . G 6 HOH A 4 404 82 HOH HOH . G 6 HOH A 5 405 1 HOH HOH . G 6 HOH A 6 406 136 HOH HOH . G 6 HOH A 7 407 6 HOH HOH . G 6 HOH A 8 408 71 HOH HOH . G 6 HOH A 9 409 12 HOH HOH . G 6 HOH A 10 410 14 HOH HOH . G 6 HOH A 11 411 134 HOH HOH . G 6 HOH A 12 412 98 HOH HOH . G 6 HOH A 13 413 24 HOH HOH . G 6 HOH A 14 414 140 HOH HOH . G 6 HOH A 15 415 135 HOH HOH . G 6 HOH A 16 416 13 HOH HOH . G 6 HOH A 17 417 23 HOH HOH . G 6 HOH A 18 418 78 HOH HOH . G 6 HOH A 19 419 26 HOH HOH . G 6 HOH A 20 420 202 HOH HOH . G 6 HOH A 21 421 205 HOH HOH . G 6 HOH A 22 422 200 HOH HOH . G 6 HOH A 23 423 201 HOH HOH . H 6 HOH B 1 101 3 HOH HOH . H 6 HOH B 2 102 42 HOH HOH . H 6 HOH B 3 103 5 HOH HOH . H 6 HOH B 4 104 25 HOH HOH . H 6 HOH B 5 105 3 HOH HOH . H 6 HOH B 6 106 84 HOH HOH . H 6 HOH B 7 107 18 HOH HOH . H 6 HOH B 8 108 74 HOH HOH . H 6 HOH B 9 109 56 HOH HOH . H 6 HOH B 10 110 1 HOH HOH . H 6 HOH B 11 111 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -9.583 -17.917 -19.688 1 39.41 ? C1 NAG 302 A 1 HETATM 2 C C2 NAG . . . E 4 -9.744 -19.118 -18.754 1 41.35 ? C2 NAG 302 A 1 HETATM 3 C C3 NAG . . . E 4 -8.924 -20.308 -19.257 1 42.98 ? C3 NAG 302 A 1 HETATM 4 C C4 NAG . . . E 4 -9.403 -20.665 -20.665 1 43.29 ? C4 NAG 302 A 1 HETATM 5 C C5 NAG . . . E 4 -9.034 -19.43 -21.483 1 42.21 ? C5 NAG 302 A 1 HETATM 6 C C6 NAG . . . E 4 -9.178 -19.628 -22.983 1 41.77 ? C6 NAG 302 A 1 HETATM 7 C C7 NAG . . . E 4 -10.184 -18.761 -16.374 1 38.33 ? C7 NAG 302 A 1 HETATM 8 C C8 NAG . . . E 4 -9.574 -18.436 -15.046 1 39.08 ? C8 NAG 302 A 1 HETATM 9 N N2 NAG . . . E 4 -9.34 -18.812 -17.394 1 38.71 ? N2 NAG 302 A 1 HETATM 10 O O3 NAG . . . E 4 -9.059 -21.399 -18.352 1 47.03 ? O3 NAG 302 A 1 HETATM 11 O O4 NAG . . . E 4 -8.868 -21.911 -21.177 1 45.19 ? O4 NAG 302 A 1 HETATM 12 O O5 NAG . . . E 4 -9.88 -18.356 -21.024 1 39.69 ? O5 NAG 302 A 1 HETATM 13 O O6 NAG . . . E 4 -10.539 -19.906 -23.289 1 41.98 ? O6 NAG 302 A 1 HETATM 14 O O7 NAG . . . E 4 -11.377 -18.952 -16.479 1 38.58 ? O7 NAG 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #