data_6C6C # _model_server_result.job_id CuoNpyEljWvnVl8YX1cFQQ _model_server_result.datetime_utc '2024-10-12 06:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 6C6C # _exptl.entry_id 6C6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.25 _cell.angle_gamma 90 _cell.entry_id 6C6C _cell.length_a 41.525 _cell.length_b 98.339 _cell.length_c 55.31 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 6 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG E 511 NAG 3 n C NAG 2 C 2 NAG E 512 NAG 3 n C BMA 3 C 3 BMA E 514 BMA 3 n C MAN 4 C 4 MAN E 515 MAN 3 n C MAN 5 C 5 MAN E 516 MAN 3 n C FUC 6 C 6 FUC E 513 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 D C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 E C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? metalc ? metalc1 A O GLU 97 A GLU 97 1_555 G NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc2 A OE1 GLN 99 A GLN 99 1_555 G NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc3 A O ALA 119 A ALA 119 1_555 G NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc4 B O TRP 60 B TRP 60 1_555 H NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6C6C _atom_sites.fract_transf_matrix[1][1] 0.024082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 301 500 NAG NAG . E 4 NAG A 1 302 501 NAG NAG . F 5 EMG A 1 303 501 EMG 142 . G 6 NA A 1 304 2 NA NA . H 6 NA B 1 101 1 NA NA . I 7 HOH A 1 401 41 HOH HOH . I 7 HOH A 2 402 12 HOH HOH . I 7 HOH A 3 403 99 HOH HOH . I 7 HOH A 4 404 49 HOH HOH . I 7 HOH A 5 405 42 HOH HOH . I 7 HOH A 6 406 17 HOH HOH . I 7 HOH A 7 407 74 HOH HOH . I 7 HOH A 8 408 142 HOH HOH . I 7 HOH A 9 409 41 HOH HOH . I 7 HOH A 10 410 33 HOH HOH . I 7 HOH A 11 411 31 HOH HOH . I 7 HOH A 12 412 53 HOH HOH . I 7 HOH A 13 413 32 HOH HOH . I 7 HOH A 14 414 37 HOH HOH . I 7 HOH A 15 415 160 HOH HOH . I 7 HOH A 16 416 133 HOH HOH . I 7 HOH A 17 417 5 HOH HOH . I 7 HOH A 18 418 163 HOH HOH . I 7 HOH A 19 419 205 HOH HOH . I 7 HOH A 20 420 51 HOH HOH . I 7 HOH A 21 421 7 HOH HOH . I 7 HOH A 22 422 44 HOH HOH . I 7 HOH A 23 423 26 HOH HOH . I 7 HOH A 24 424 122 HOH HOH . I 7 HOH A 25 425 1 HOH HOH . I 7 HOH A 26 426 73 HOH HOH . I 7 HOH A 27 427 90 HOH HOH . I 7 HOH A 28 428 14 HOH HOH . I 7 HOH A 29 429 106 HOH HOH . I 7 HOH A 30 430 26 HOH HOH . I 7 HOH A 31 431 76 HOH HOH . I 7 HOH A 32 432 61 HOH HOH . I 7 HOH A 33 433 21 HOH HOH . I 7 HOH A 34 434 54 HOH HOH . I 7 HOH A 35 435 156 HOH HOH . I 7 HOH A 36 436 27 HOH HOH . I 7 HOH A 37 437 112 HOH HOH . I 7 HOH A 38 438 13 HOH HOH . I 7 HOH A 39 439 46 HOH HOH . I 7 HOH A 40 440 40 HOH HOH . I 7 HOH A 41 441 52 HOH HOH . I 7 HOH A 42 442 23 HOH HOH . I 7 HOH A 43 443 69 HOH HOH . I 7 HOH A 44 444 109 HOH HOH . I 7 HOH A 45 445 25 HOH HOH . I 7 HOH A 46 446 70 HOH HOH . I 7 HOH A 47 447 6 HOH HOH . I 7 HOH A 48 448 60 HOH HOH . I 7 HOH A 49 449 29 HOH HOH . I 7 HOH A 50 450 201 HOH HOH . I 7 HOH A 51 451 4 HOH HOH . I 7 HOH A 52 452 55 HOH HOH . I 7 HOH A 53 453 24 HOH HOH . I 7 HOH A 54 454 10 HOH HOH . I 7 HOH A 55 455 10 HOH HOH . I 7 HOH A 56 456 86 HOH HOH . I 7 HOH A 57 457 65 HOH HOH . I 7 HOH A 58 458 20 HOH HOH . I 7 HOH A 59 459 2 HOH HOH . I 7 HOH A 60 460 120 HOH HOH . I 7 HOH A 61 461 35 HOH HOH . I 7 HOH A 62 462 91 HOH HOH . I 7 HOH A 63 463 78 HOH HOH . I 7 HOH A 64 464 103 HOH HOH . I 7 HOH A 65 465 66 HOH HOH . I 7 HOH A 66 466 139 HOH HOH . I 7 HOH A 67 467 12 HOH HOH . I 7 HOH A 68 468 140 HOH HOH . I 7 HOH A 69 469 33 HOH HOH . I 7 HOH A 70 470 78 HOH HOH . I 7 HOH A 71 471 7 HOH HOH . I 7 HOH A 72 472 63 HOH HOH . I 7 HOH A 73 473 85 HOH HOH . I 7 HOH A 74 474 158 HOH HOH . I 7 HOH A 75 475 148 HOH HOH . I 7 HOH A 76 476 161 HOH HOH . I 7 HOH A 77 477 57 HOH HOH . I 7 HOH A 78 478 111 HOH HOH . I 7 HOH A 79 479 231 HOH HOH . I 7 HOH A 80 480 106 HOH HOH . I 7 HOH A 81 481 95 HOH HOH . I 7 HOH A 82 482 226 HOH HOH . I 7 HOH A 83 483 225 HOH HOH . I 7 HOH A 84 484 96 HOH HOH . J 7 HOH B 1 201 22 HOH HOH . J 7 HOH B 2 202 88 HOH HOH . J 7 HOH B 3 203 15 HOH HOH . J 7 HOH B 4 204 16 HOH HOH . J 7 HOH B 5 205 30 HOH HOH . J 7 HOH B 6 206 130 HOH HOH . J 7 HOH B 7 207 8 HOH HOH . J 7 HOH B 8 208 36 HOH HOH . J 7 HOH B 9 209 62 HOH HOH . J 7 HOH B 10 210 77 HOH HOH . J 7 HOH B 11 211 13 HOH HOH . J 7 HOH B 12 212 80 HOH HOH . J 7 HOH B 13 213 55 HOH HOH . J 7 HOH B 14 214 39 HOH HOH . J 7 HOH B 15 215 121 HOH HOH . J 7 HOH B 16 216 98 HOH HOH . J 7 HOH B 17 217 28 HOH HOH . J 7 HOH B 18 218 84 HOH HOH . J 7 HOH B 19 219 36 HOH HOH . J 7 HOH B 20 220 9 HOH HOH . J 7 HOH B 21 221 56 HOH HOH . J 7 HOH B 22 222 21 HOH HOH . J 7 HOH B 23 223 1 HOH HOH . J 7 HOH B 24 224 115 HOH HOH . J 7 HOH B 25 225 117 HOH HOH . J 7 HOH B 26 226 162 HOH HOH . J 7 HOH B 27 227 107 HOH HOH . J 7 HOH B 28 228 67 HOH HOH . J 7 HOH B 29 229 64 HOH HOH . J 7 HOH B 30 230 38 HOH HOH . J 7 HOH B 31 231 176 HOH HOH . J 7 HOH B 32 232 227 HOH HOH . J 7 HOH B 33 233 83 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 16.112 _atom_site.Cartn_y -8.194 _atom_site.Cartn_z 25.692 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #