data_6C6E # _model_server_result.job_id KHUx6_tDvdxi1VQsKCKPIw _model_server_result.datetime_utc '2024-11-07 22:47:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6C6E # _exptl.entry_id 6C6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6C6E _cell.length_a 42.221 _cell.length_b 106.14 _cell.length_c 107.301 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG E 311 NAG 3 n C NAG 2 C 2 NAG E 312 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? disulf ? disulf2 A SG CYS 208 A CYS 208 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 20 A ASN 20 1_555 D C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 E C1 NAG . A NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A ND2 ASN 165 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc1 A O THR 26 A THR 26 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc2 A O TRP 40 A TRP 40 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc3 A O GLU 97 A GLU 97 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.194 ? metalc ? metalc4 A OE1 GLN 99 A GLN 99 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc5 A O ALA 119 A ALA 119 1_555 G NA NA . A NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.186 ? metalc ? metalc6 H NA NA . A NA 307 1_555 I O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 396 n n C1 O1 NAG sing 397 n n C1 O5 NAG sing 398 n n C1 H1 NAG sing 399 n n C2 C3 NAG sing 400 n n C2 N2 NAG sing 401 n n C2 H2 NAG sing 402 n n C3 C4 NAG sing 403 n n C3 O3 NAG sing 404 n n C3 H3 NAG sing 405 n n C4 C5 NAG sing 406 n n C4 O4 NAG sing 407 n n C4 H4 NAG sing 408 n n C5 C6 NAG sing 409 n n C5 O5 NAG sing 410 n n C5 H5 NAG sing 411 n n C6 O6 NAG sing 412 n n C6 H61 NAG sing 413 n n C6 H62 NAG sing 414 n n C7 C8 NAG sing 415 n n C7 N2 NAG sing 416 n n C7 O7 NAG doub 417 n n C8 H81 NAG sing 418 n n C8 H82 NAG sing 419 n n C8 H83 NAG sing 420 n n N2 HN2 NAG sing 421 n n O1 HO1 NAG sing 422 n n O3 HO3 NAG sing 423 n n O4 HO4 NAG sing 424 n n O6 HO6 NAG sing 425 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6C6E _atom_sites.fract_transf_matrix[1][1] 0.023685 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 301 300 NAG NAG . E 4 NAG A 1 302 301 NAG NAG . F 5 EM4 A 1 305 501 EM4 293 . G 6 NA A 1 306 1 NA NA . H 6 NA A 1 307 2 NA NA . I 7 HOH A 1 401 263 HOH HOH . I 7 HOH A 2 402 264 HOH HOH . I 7 HOH A 3 403 112 HOH HOH . I 7 HOH A 4 404 95 HOH HOH . I 7 HOH A 5 405 17 HOH HOH . I 7 HOH A 6 406 72 HOH HOH . I 7 HOH A 7 407 259 HOH HOH . I 7 HOH A 8 408 265 HOH HOH . I 7 HOH A 9 409 260 HOH HOH . I 7 HOH A 10 410 77 HOH HOH . I 7 HOH A 11 411 73 HOH HOH . I 7 HOH A 12 412 86 HOH HOH . I 7 HOH A 13 413 33 HOH HOH . I 7 HOH A 14 414 36 HOH HOH . I 7 HOH A 15 415 144 HOH HOH . I 7 HOH A 16 416 139 HOH HOH . I 7 HOH A 17 417 261 HOH HOH . I 7 HOH A 18 418 45 HOH HOH . I 7 HOH A 19 419 262 HOH HOH . I 7 HOH A 20 420 256 HOH HOH . I 7 HOH A 21 421 125 HOH HOH . I 7 HOH A 22 422 83 HOH HOH . I 7 HOH A 23 423 79 HOH HOH . I 7 HOH A 24 424 53 HOH HOH . I 7 HOH A 25 425 61 HOH HOH . I 7 HOH A 26 426 6 HOH HOH . I 7 HOH A 27 427 101 HOH HOH . I 7 HOH A 28 428 113 HOH HOH . I 7 HOH A 29 429 42 HOH HOH . I 7 HOH A 30 430 65 HOH HOH . I 7 HOH A 31 431 5 HOH HOH . I 7 HOH A 32 432 40 HOH HOH . I 7 HOH A 33 433 28 HOH HOH . I 7 HOH A 34 434 190 HOH HOH . I 7 HOH A 35 435 122 HOH HOH . I 7 HOH A 36 436 99 HOH HOH . I 7 HOH A 37 437 20 HOH HOH . I 7 HOH A 38 438 106 HOH HOH . I 7 HOH A 39 439 93 HOH HOH . I 7 HOH A 40 440 51 HOH HOH . I 7 HOH A 41 441 134 HOH HOH . I 7 HOH A 42 442 24 HOH HOH . I 7 HOH A 43 443 157 HOH HOH . I 7 HOH A 44 444 25 HOH HOH . I 7 HOH A 45 445 100 HOH HOH . I 7 HOH A 46 446 62 HOH HOH . I 7 HOH A 47 447 2 HOH HOH . I 7 HOH A 48 448 107 HOH HOH . I 7 HOH A 49 449 257 HOH HOH . I 7 HOH A 50 450 90 HOH HOH . I 7 HOH A 51 451 71 HOH HOH . I 7 HOH A 52 452 26 HOH HOH . I 7 HOH A 53 453 142 HOH HOH . I 7 HOH A 54 454 27 HOH HOH . I 7 HOH A 55 455 23 HOH HOH . I 7 HOH A 56 456 76 HOH HOH . I 7 HOH A 57 457 215 HOH HOH . I 7 HOH A 58 458 58 HOH HOH . I 7 HOH A 59 459 31 HOH HOH . I 7 HOH A 60 460 47 HOH HOH . I 7 HOH A 61 461 44 HOH HOH . I 7 HOH A 62 462 12 HOH HOH . I 7 HOH A 63 463 66 HOH HOH . I 7 HOH A 64 464 3 HOH HOH . I 7 HOH A 65 465 37 HOH HOH . I 7 HOH A 66 466 10 HOH HOH . I 7 HOH A 67 467 91 HOH HOH . I 7 HOH A 68 468 22 HOH HOH . I 7 HOH A 69 469 52 HOH HOH . I 7 HOH A 70 470 1 HOH HOH . I 7 HOH A 71 471 34 HOH HOH . I 7 HOH A 72 472 74 HOH HOH . I 7 HOH A 73 473 171 HOH HOH . I 7 HOH A 74 474 78 HOH HOH . I 7 HOH A 75 475 15 HOH HOH . I 7 HOH A 76 476 114 HOH HOH . I 7 HOH A 77 477 243 HOH HOH . I 7 HOH A 78 478 67 HOH HOH . I 7 HOH A 79 479 7 HOH HOH . I 7 HOH A 80 480 43 HOH HOH . I 7 HOH A 81 481 55 HOH HOH . I 7 HOH A 82 482 242 HOH HOH . I 7 HOH A 83 483 48 HOH HOH . I 7 HOH A 84 484 84 HOH HOH . I 7 HOH A 85 485 64 HOH HOH . I 7 HOH A 86 486 105 HOH HOH . I 7 HOH A 87 487 137 HOH HOH . I 7 HOH A 88 488 38 HOH HOH . I 7 HOH A 89 489 258 HOH HOH . I 7 HOH A 90 490 240 HOH HOH . I 7 HOH A 91 491 246 HOH HOH . I 7 HOH A 92 492 82 HOH HOH . I 7 HOH A 93 493 119 HOH HOH . J 7 HOH B 1 101 180 HOH HOH . J 7 HOH B 2 102 8 HOH HOH . J 7 HOH B 3 103 49 HOH HOH . J 7 HOH B 4 104 13 HOH HOH . J 7 HOH B 5 105 30 HOH HOH . J 7 HOH B 6 106 117 HOH HOH . J 7 HOH B 7 107 98 HOH HOH . J 7 HOH B 8 108 29 HOH HOH . J 7 HOH B 9 109 14 HOH HOH . J 7 HOH B 10 110 111 HOH HOH . J 7 HOH B 11 111 140 HOH HOH . J 7 HOH B 12 112 118 HOH HOH . J 7 HOH B 13 113 18 HOH HOH . J 7 HOH B 14 114 70 HOH HOH . J 7 HOH B 15 115 87 HOH HOH . J 7 HOH B 16 116 187 HOH HOH . J 7 HOH B 17 117 75 HOH HOH . J 7 HOH B 18 118 241 HOH HOH . J 7 HOH B 19 119 175 HOH HOH . J 7 HOH B 20 120 60 HOH HOH . J 7 HOH B 21 121 19 HOH HOH . J 7 HOH B 22 122 11 HOH HOH . J 7 HOH B 23 123 21 HOH HOH . J 7 HOH B 24 124 56 HOH HOH . J 7 HOH B 25 125 204 HOH HOH . J 7 HOH B 26 126 104 HOH HOH . J 7 HOH B 27 127 35 HOH HOH . J 7 HOH B 28 128 162 HOH HOH . J 7 HOH B 29 129 110 HOH HOH . J 7 HOH B 30 130 68 HOH HOH . J 7 HOH B 31 131 16 HOH HOH . J 7 HOH B 32 132 63 HOH HOH . J 7 HOH B 33 133 9 HOH HOH . J 7 HOH B 34 134 46 HOH HOH . J 7 HOH B 35 135 166 HOH HOH . J 7 HOH B 36 136 54 HOH HOH . J 7 HOH B 37 137 124 HOH HOH . J 7 HOH B 38 138 97 HOH HOH . J 7 HOH B 39 139 57 HOH HOH . J 7 HOH B 40 140 239 HOH HOH . J 7 HOH B 41 141 176 HOH HOH . J 7 HOH B 42 142 172 HOH HOH . J 7 HOH B 43 143 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -3.46 -21.903 -9.466 1 51.58 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . D 4 -3.696 -23.013 -8.425 1 55.24 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . D 4 -5.191 -23.106 -8.056 1 54.72 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . D 4 -5.771 -21.748 -7.653 1 51.53 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . D 4 -5.543 -20.801 -8.828 1 50.78 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . D 4 -6.11 -19.408 -8.583 1 51.25 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . D 4 -1.944 -24.753 -8.822 1 56.38 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . D 4 -1.64 -26.051 -9.511 1 54.52 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . D 4 -3.194 -24.273 -8.981 1 57.24 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . D 4 -5.392 -24.015 -6.972 1 59.17 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . D 4 -7.161 -21.847 -7.279 1 46.83 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . D 4 -4.13 -20.701 -9.058 1 51.3 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . D 4 -5.359 -18.766 -7.55 1 50.56 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . D 4 -1.089 -24.197 -8.162 1 58.16 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 14 #