data_6C6N # _model_server_result.job_id R64xLtMxbRqljVXcUQWg-Q _model_server_result.datetime_utc '2025-01-05 18:39:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6c6n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":605}' # _entry.id 6C6N # _exptl.entry_id 6C6N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.684 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(3-{[dimethyl(2-methylphenyl)silyl]methoxy}phenyl)methyl]-N-ethyl-6-methoxy-6-methylhepta-2,4-diyn-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6C6N _cell.length_a 126.96 _cell.length_b 126.96 _cell.length_c 166.12 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6C6N _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 R N N # _chem_comp.formula 'C28 H37 N O2 Si' _chem_comp.formula_weight 447.684 _chem_comp.id EKV _chem_comp.mon_nstd_flag . _chem_comp.name N-[(3-{[dimethyl(2-methylphenyl)silyl]methoxy}phenyl)methyl]-N-ethyl-6-methoxy-6-methylhepta-2,4-diyn-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 SI1 EKV sing 186 n n C30 C25 EKV sing 187 n n SI1 C24 EKV sing 188 n n SI1 C22 EKV sing 189 n n SI1 C32 EKV sing 190 n n C25 C24 EKV doub 191 n y C25 C26 EKV sing 192 n y O21 C19 EKV sing 193 n n O21 C22 EKV sing 194 n n C02 C01 EKV sing 195 n n C02 N03 EKV sing 196 n n C20 C19 EKV doub 197 n y C20 C01 EKV sing 198 n y C24 C29 EKV sing 199 n y C26 C27 EKV doub 200 n y C19 C18 EKV sing 201 n y C01 C16 EKV doub 202 n y C14 N03 EKV sing 203 n n C14 C15 EKV sing 204 n n C18 C17 EKV doub 205 n y C16 C17 EKV sing 206 n y C27 C28 EKV sing 207 n y C29 C28 EKV doub 208 n y N03 C04 EKV sing 209 n n C04 C05 EKV sing 210 n n C05 C06 EKV trip 211 n n C06 C07 EKV sing 212 n n C07 C08 EKV trip 213 n n C10 C09 EKV sing 214 n n C11 C09 EKV sing 215 n n C08 C09 EKV sing 216 n n C09 O12 EKV sing 217 n n O12 C13 EKV sing 218 n n C10 H1 EKV sing 219 n n C10 H2 EKV sing 220 n n C10 H3 EKV sing 221 n n C13 H4 EKV sing 222 n n C13 H5 EKV sing 223 n n C13 H6 EKV sing 224 n n C15 H7 EKV sing 225 n n C15 H8 EKV sing 226 n n C15 H9 EKV sing 227 n n C17 H10 EKV sing 228 n n C20 H11 EKV sing 229 n n C22 H12 EKV sing 230 n n C22 H13 EKV sing 231 n n C26 H14 EKV sing 232 n n C28 H15 EKV sing 233 n n C02 H16 EKV sing 234 n n C02 H17 EKV sing 235 n n C04 H19 EKV sing 236 n n C04 H20 EKV sing 237 n n C11 H21 EKV sing 238 n n C11 H22 EKV sing 239 n n C11 H23 EKV sing 240 n n C14 H24 EKV sing 241 n n C14 H25 EKV sing 242 n n C16 H26 EKV sing 243 n n C18 H27 EKV sing 244 n n C27 H28 EKV sing 245 n n C29 H29 EKV sing 246 n n C30 H30 EKV sing 247 n n C30 H31 EKV sing 248 n n C30 H32 EKV sing 249 n n C31 H33 EKV sing 250 n n C31 H34 EKV sing 251 n n C31 H35 EKV sing 252 n n C32 H36 EKV sing 253 n n C32 H37 EKV sing 254 n n C32 H38 EKV sing 255 n n # _atom_sites.entry_id 6C6N _atom_sites.fract_transf_matrix[1][1] 0.007876 _atom_sites.fract_transf_matrix[1][2] 0.004547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 601 2 GOL GOL . D 2 GOL A 1 602 3 GOL GOL . E 2 GOL A 1 603 4 GOL GOL . F 3 SO4 A 1 604 6 SO4 SO4 . G 4 CPS A 1 605 1 CPS CPS . H 4 CPS A 1 606 2 CPS CPS . I 4 CPS A 1 607 4 CPS CPS . J 4 CPS A 1 608 5 CPS CPS . K 4 CPS A 1 609 7 CPS CPS . L 5 EKV A 1 610 1 EKV L1R . M 6 FAD A 1 611 1 FAD FAD . N 2 GOL B 1 601 1 GOL GOL . O 3 SO4 B 1 602 5 SO4 SO4 . P 4 CPS B 1 603 3 CPS CPS . Q 4 CPS B 1 604 6 CPS CPS . R 5 EKV B 1 605 2 EKV L1R . S 6 FAD B 1 606 2 FAD FAD . T 7 HOH A 1 701 90 HOH HOH . T 7 HOH A 2 702 32 HOH HOH . T 7 HOH A 3 703 43 HOH HOH . T 7 HOH A 4 704 176 HOH HOH . T 7 HOH A 5 705 150 HOH HOH . T 7 HOH A 6 706 35 HOH HOH . T 7 HOH A 7 707 171 HOH HOH . T 7 HOH A 8 708 170 HOH HOH . T 7 HOH A 9 709 126 HOH HOH . T 7 HOH A 10 710 48 HOH HOH . T 7 HOH A 11 711 45 HOH HOH . T 7 HOH A 12 712 133 HOH HOH . T 7 HOH A 13 713 173 HOH HOH . T 7 HOH A 14 714 44 HOH HOH . T 7 HOH A 15 715 147 HOH HOH . T 7 HOH A 16 716 175 HOH HOH . T 7 HOH A 17 717 124 HOH HOH . T 7 HOH A 18 718 177 HOH HOH . T 7 HOH A 19 719 26 HOH HOH . T 7 HOH A 20 720 159 HOH HOH . T 7 HOH A 21 721 125 HOH HOH . T 7 HOH A 22 722 152 HOH HOH . T 7 HOH A 23 723 4 HOH HOH . T 7 HOH A 24 724 103 HOH HOH . T 7 HOH A 25 725 30 HOH HOH . T 7 HOH A 26 726 76 HOH HOH . T 7 HOH A 27 727 64 HOH HOH . T 7 HOH A 28 728 12 HOH HOH . T 7 HOH A 29 729 5 HOH HOH . T 7 HOH A 30 730 71 HOH HOH . T 7 HOH A 31 731 9 HOH HOH . T 7 HOH A 32 732 111 HOH HOH . T 7 HOH A 33 733 100 HOH HOH . T 7 HOH A 34 734 27 HOH HOH . T 7 HOH A 35 735 11 HOH HOH . T 7 HOH A 36 736 66 HOH HOH . T 7 HOH A 37 737 145 HOH HOH . T 7 HOH A 38 738 3 HOH HOH . T 7 HOH A 39 739 151 HOH HOH . T 7 HOH A 40 740 136 HOH HOH . T 7 HOH A 41 741 138 HOH HOH . T 7 HOH A 42 742 14 HOH HOH . T 7 HOH A 43 743 67 HOH HOH . T 7 HOH A 44 744 20 HOH HOH . T 7 HOH A 45 745 29 HOH HOH . T 7 HOH A 46 746 118 HOH HOH . T 7 HOH A 47 747 2 HOH HOH . T 7 HOH A 48 748 28 HOH HOH . T 7 HOH A 49 749 22 HOH HOH . T 7 HOH A 50 750 54 HOH HOH . T 7 HOH A 51 751 149 HOH HOH . T 7 HOH A 52 752 59 HOH HOH . T 7 HOH A 53 753 50 HOH HOH . T 7 HOH A 54 754 168 HOH HOH . T 7 HOH A 55 755 172 HOH HOH . T 7 HOH A 56 756 13 HOH HOH . T 7 HOH A 57 757 135 HOH HOH . T 7 HOH A 58 758 148 HOH HOH . T 7 HOH A 59 759 18 HOH HOH . T 7 HOH A 60 760 105 HOH HOH . T 7 HOH A 61 761 93 HOH HOH . T 7 HOH A 62 762 53 HOH HOH . T 7 HOH A 63 763 39 HOH HOH . T 7 HOH A 64 764 88 HOH HOH . T 7 HOH A 65 765 102 HOH HOH . T 7 HOH A 66 766 6 HOH HOH . T 7 HOH A 67 767 60 HOH HOH . T 7 HOH A 68 768 58 HOH HOH . T 7 HOH A 69 769 83 HOH HOH . T 7 HOH A 70 770 155 HOH HOH . T 7 HOH A 71 771 98 HOH HOH . T 7 HOH A 72 772 31 HOH HOH . T 7 HOH A 73 773 79 HOH HOH . T 7 HOH A 74 774 86 HOH HOH . T 7 HOH A 75 775 142 HOH HOH . T 7 HOH A 76 776 117 HOH HOH . T 7 HOH A 77 777 55 HOH HOH . T 7 HOH A 78 778 110 HOH HOH . T 7 HOH A 79 779 137 HOH HOH . T 7 HOH A 80 780 141 HOH HOH . T 7 HOH A 81 781 78 HOH HOH . T 7 HOH A 82 782 144 HOH HOH . T 7 HOH A 83 783 179 HOH HOH . T 7 HOH A 84 784 169 HOH HOH . T 7 HOH A 85 785 89 HOH HOH . T 7 HOH A 86 786 91 HOH HOH . T 7 HOH A 87 787 95 HOH HOH . T 7 HOH A 88 788 92 HOH HOH . T 7 HOH A 89 789 106 HOH HOH . T 7 HOH A 90 790 62 HOH HOH . T 7 HOH A 91 791 101 HOH HOH . T 7 HOH A 92 792 52 HOH HOH . T 7 HOH A 93 793 129 HOH HOH . T 7 HOH A 94 794 174 HOH HOH . T 7 HOH A 95 795 109 HOH HOH . T 7 HOH A 96 796 113 HOH HOH . T 7 HOH A 97 797 81 HOH HOH . T 7 HOH A 98 798 130 HOH HOH . U 7 HOH B 1 701 156 HOH HOH . U 7 HOH B 2 702 10 HOH HOH . U 7 HOH B 3 703 74 HOH HOH . U 7 HOH B 4 704 57 HOH HOH . U 7 HOH B 5 705 132 HOH HOH . U 7 HOH B 6 706 61 HOH HOH . U 7 HOH B 7 707 80 HOH HOH . U 7 HOH B 8 708 139 HOH HOH . U 7 HOH B 9 709 123 HOH HOH . U 7 HOH B 10 710 34 HOH HOH . U 7 HOH B 11 711 37 HOH HOH . U 7 HOH B 12 712 75 HOH HOH . U 7 HOH B 13 713 134 HOH HOH . U 7 HOH B 14 714 42 HOH HOH . U 7 HOH B 15 715 51 HOH HOH . U 7 HOH B 16 716 82 HOH HOH . U 7 HOH B 17 717 85 HOH HOH . U 7 HOH B 18 718 157 HOH HOH . U 7 HOH B 19 719 56 HOH HOH . U 7 HOH B 20 720 38 HOH HOH . U 7 HOH B 21 721 33 HOH HOH . U 7 HOH B 22 722 104 HOH HOH . U 7 HOH B 23 723 140 HOH HOH . U 7 HOH B 24 724 17 HOH HOH . U 7 HOH B 25 725 23 HOH HOH . U 7 HOH B 26 726 36 HOH HOH . U 7 HOH B 27 727 8 HOH HOH . U 7 HOH B 28 728 40 HOH HOH . U 7 HOH B 29 729 1 HOH HOH . U 7 HOH B 30 730 161 HOH HOH . U 7 HOH B 31 731 116 HOH HOH . U 7 HOH B 32 732 154 HOH HOH . U 7 HOH B 33 733 69 HOH HOH . U 7 HOH B 34 734 162 HOH HOH . U 7 HOH B 35 735 178 HOH HOH . U 7 HOH B 36 736 72 HOH HOH . U 7 HOH B 37 737 25 HOH HOH . U 7 HOH B 38 738 21 HOH HOH . U 7 HOH B 39 739 63 HOH HOH . U 7 HOH B 40 740 87 HOH HOH . U 7 HOH B 41 741 165 HOH HOH . U 7 HOH B 42 742 96 HOH HOH . U 7 HOH B 43 743 153 HOH HOH . U 7 HOH B 44 744 65 HOH HOH . U 7 HOH B 45 745 107 HOH HOH . U 7 HOH B 46 746 70 HOH HOH . U 7 HOH B 47 747 94 HOH HOH . U 7 HOH B 48 748 99 HOH HOH . U 7 HOH B 49 749 24 HOH HOH . U 7 HOH B 50 750 163 HOH HOH . U 7 HOH B 51 751 19 HOH HOH . U 7 HOH B 52 752 114 HOH HOH . U 7 HOH B 53 753 84 HOH HOH . U 7 HOH B 54 754 115 HOH HOH . U 7 HOH B 55 755 119 HOH HOH . U 7 HOH B 56 756 7 HOH HOH . U 7 HOH B 57 757 49 HOH HOH . U 7 HOH B 58 758 131 HOH HOH . U 7 HOH B 59 759 164 HOH HOH . U 7 HOH B 60 760 120 HOH HOH . U 7 HOH B 61 761 143 HOH HOH . U 7 HOH B 62 762 15 HOH HOH . U 7 HOH B 63 763 127 HOH HOH . U 7 HOH B 64 764 112 HOH HOH . U 7 HOH B 65 765 158 HOH HOH . U 7 HOH B 66 766 47 HOH HOH . U 7 HOH B 67 767 73 HOH HOH . U 7 HOH B 68 768 122 HOH HOH . U 7 HOH B 69 769 16 HOH HOH . U 7 HOH B 70 770 146 HOH HOH . U 7 HOH B 71 771 108 HOH HOH . U 7 HOH B 72 772 167 HOH HOH . U 7 HOH B 73 773 180 HOH HOH . U 7 HOH B 74 774 160 HOH HOH . U 7 HOH B 75 775 121 HOH HOH . U 7 HOH B 76 776 41 HOH HOH . U 7 HOH B 77 777 46 HOH HOH . U 7 HOH B 78 778 77 HOH HOH . U 7 HOH B 79 779 97 HOH HOH . U 7 HOH B 80 780 128 HOH HOH . U 7 HOH B 81 781 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EKV . . . R 5 -4.905 49.042 61.509 1 43.93 ? C10 EKV 605 B 1 HETATM 2 C C13 EKV . . . R 5 -3.33 48.266 59.17 1 60.38 ? C13 EKV 605 B 1 HETATM 3 C C15 EKV . . . R 5 -7.512 42.005 62.311 1 36.75 ? C15 EKV 605 B 1 HETATM 4 C C17 EKV . . . R 5 -0.924 40.505 65.11 1 39.8 ? C17 EKV 605 B 1 HETATM 5 C C20 EKV . . . R 5 -3.477 39.516 64.597 1 35.8 ? C20 EKV 605 B 1 HETATM 6 C C22 EKV . . . R 5 -1.477 36.434 64.577 1 39.22 ? C22 EKV 605 B 1 HETATM 7 C C24 EKV . . . R 5 -0.378 33.598 64.589 1 43.22 ? C24 EKV 605 B 1 HETATM 8 C C26 EKV . . . R 5 0.868 31.53 64.56 1 40.18 ? C26 EKV 605 B 1 HETATM 9 C C28 EKV . . . R 5 2.035 33.644 64.422 1 35.61 ? C28 EKV 605 B 1 HETATM 10 C C01 EKV . . . R 5 -3.28 40.897 64.731 1 39.2 ? C01 EKV 605 B 1 HETATM 11 C C02 EKV . . . R 5 -4.498 41.851 64.597 1 45.02 ? C02 EKV 605 B 1 HETATM 12 N N03 EKV . . . R 5 -5.406 41.37 63.525 1 43.04 ? N03 EKV 605 B 1 HETATM 13 C C04 EKV . . . R 5 -4.753 41.549 62.2 1 40.33 ? C04 EKV 605 B 1 HETATM 14 C C05 EKV . . . R 5 -4.375 43.037 61.987 1 43.95 ? C05 EKV 605 B 1 HETATM 15 C C06 EKV . . . R 5 -4.104 44.206 61.86 1 39.05 ? C06 EKV 605 B 1 HETATM 16 C C07 EKV . . . R 5 -3.821 45.714 61.734 1 33.42 ? C07 EKV 605 B 1 HETATM 17 C C08 EKV . . . R 5 -3.645 46.897 61.65 1 48.97 ? C08 EKV 605 B 1 HETATM 18 C C09 EKV . . . R 5 -3.481 48.43 61.555 1 49.03 ? C09 EKV 605 B 1 HETATM 19 C C11 EKV . . . R 5 -2.739 48.939 62.782 1 45.99 ? C11 EKV 605 B 1 HETATM 20 O O12 EKV . . . R 5 -2.777 48.791 60.375 1 51.37 ? O12 EKV 605 B 1 HETATM 21 C C14 EKV . . . R 5 -6.676 42.127 63.604 1 45.88 ? C14 EKV 605 B 1 HETATM 22 C C16 EKV . . . R 5 -2.008 41.387 64.99 1 42.78 ? C16 EKV 605 B 1 HETATM 23 C C18 EKV . . . R 5 -1.12 39.119 64.972 1 43.27 ? C18 EKV 605 B 1 HETATM 24 C C19 EKV . . . R 5 -2.396 38.641 64.711 1 37.93 ? C19 EKV 605 B 1 HETATM 25 O O21 EKV . . . R 5 -2.641 37.232 64.563 1 37.98 ? O21 EKV 605 B 1 HETATM 26 SI SI1 EKV . . . R 5 -2.026 34.602 64.675 1 44.86 ? SI1 EKV 605 B 1 HETATM 27 C C25 EKV . . . R 5 -0.351 32.192 64.625 1 55.08 ? C25 EKV 605 B 1 HETATM 28 C C27 EKV . . . R 5 2.063 32.249 64.458 1 41.9 ? C27 EKV 605 B 1 HETATM 29 C C29 EKV . . . R 5 0.807 34.313 64.487 1 39.03 ? C29 EKV 605 B 1 HETATM 30 C C30 EKV . . . R 5 -1.655 31.388 64.735 1 27.83 ? C30 EKV 605 B 1 HETATM 31 C C31 EKV . . . R 5 -2.924 34.339 66.33 1 42.19 ? C31 EKV 605 B 1 HETATM 32 C C32 EKV . . . R 5 -3.192 34.211 63.217 1 33.58 ? C32 EKV 605 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #